Experiment set1IT002 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
AO356_14440 -6.2 -4.3 indole-3-glycerol-phosphate synthase compare
AO356_21440 -5.4 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_08635 -5.0 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
AO356_14435 -4.9 -6.7 anthranilate phosphoribosyltransferase compare
AO356_13410 -4.8 -11.1 homoserine O-acetyltransferase compare
AO356_12020 -4.6 -10.8 pyruvate carboxylase subunit A compare
AO356_18325 -4.6 -10.6 argininosuccinate synthase compare
AO356_13085 -4.6 -8.7 N-acetylglutamate synthase compare
AO356_14420 -4.5 -14.3 anthranilate synthase compare
AO356_06965 -4.4 -7.8 histidinol dehydrogenase compare
AO356_13405 -4.4 -10.1 methionine biosynthesis protein MetW compare
AO356_21415 -4.3 -10.8 3-isopropylmalate dehydrogenase compare
AO356_18275 -4.3 -13.1 ornithine carbamoyltransferase compare
AO356_12525 -4.2 -9.4 acetylglutamate kinase compare
AO356_09815 -4.2 -6.3 imidazoleglycerol-phosphate dehydratase compare
AO356_09370 -4.1 -12.7 glutamate synthase compare
AO356_22200 -4.1 -8.3 sirohydrochlorin ferrochelatase compare
AO356_05225 -4.1 -6.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_14430 -4.1 -9.5 anthranilate synthase compare
AO356_16180 -4.1 -14.8 ketol-acid reductoisomerase compare
AO356_09800 -4.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_16175 -4.0 -7.3 acetolactate synthase 3 regulatory subunit compare
AO356_09525 -4.0 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_00560 -4.0 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_21465 -4.0 -4.7 amidophosphoribosyltransferase compare
AO356_09375 -4.0 -22.2 glutamate synthase compare
AO356_16170 -3.9 -10.7 acetolactate synthase 3 catalytic subunit compare
AO356_14295 -3.9 -2.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_13605 -3.9 -7.9 5,10-methylenetetrahydrofolate reductase compare
AO356_21400 -3.8 -8.0 isopropylmalate isomerase compare
AO356_06550 -3.8 -12.3 2-isopropylmalate synthase compare
AO356_19795 -3.7 -2.5 glycerol-3-phosphate dehydrogenase compare
AO356_21405 -3.7 -5.5 3-isopropylmalate dehydratase compare
AO356_08735 -3.7 -13.8 phosphoserine phosphatase compare
AO356_09520 -3.7 -5.5 phosphoribosyl-AMP cyclohydrolase compare
AO356_02175 -3.6 -9.5 transaldolase compare
AO356_05160 -3.6 -9.7 glucose-6-phosphate dehydrogenase compare
AO356_13250 -3.6 -10.6 dihydroxy-acid dehydratase compare
AO356_12520 -3.6 -2.4 orotate phosphoribosyltransferase compare
AO356_09810 -3.5 -4.8 imidazole glycerol phosphate synthase subunit HisH compare
AO356_19090 -3.5 -2.4 phosphoribosylaminoimidazole synthetase compare
AO356_00555 -3.4 -11.2 sulfite reductase compare
AO356_10915 -3.3 -8.7 tryptophan synthase subunit beta compare
AO356_12025 -3.3 -13.3 pyruvate carboxylase subunit B compare
AO356_17890 -3.3 -2.8 H-NS histone compare
AO356_10300 -3.2 -4.8 3-phosphoglycerate dehydrogenase compare
AO356_16075 -3.2 -5.7 Fis family transcriptional regulator compare
AO356_10340 -3.1 -13.8 phosphoserine phosphatase compare
AO356_17520 -3.1 -2.1 phosphoribosylformylglycinamidine synthase compare
AO356_10910 -3.1 -8.3 tryptophan synthase subunit alpha compare
AO356_15165 -3.0 -2.9 protein cII compare
AO356_01750 -3.0 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO356_06970 -3.0 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_21470 -3.0 -5.9 O-succinylhomoserine sulfhydrylase compare
AO356_20830 -3.0 -4.0 phosphoadenosine phosphosulfate reductase compare
AO356_19045 -2.9 -13.7 chemotaxis protein CheY compare
AO356_12780 -2.9 -7.5 argininosuccinate lyase compare
AO356_07330 -2.8 -7.1 1-phosphofructokinase (EC 2.7.1.56) (from data) conserved
AO356_00355 -2.8 -9.2 chemotaxis protein CheY compare
AO356_12015 -2.8 -9.8 LysR family transcriptional regulator compare
AO356_16050 -2.8 -1.9 glucose-6-phosphate isomerase compare
AO356_07005 -2.7 -3.1 ABC transporter ATP-binding protein compare
AO356_18805 -2.7 -1.8 magnesium transporter compare
AO356_18730 -2.7 -10.1 arginine N-succinyltransferase compare
AO356_01745 -2.6 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_19085 -2.6 -8.2 phosphoribosylglycinamide formyltransferase compare
AO356_05995 -2.6 -3.6 hypothetical protein compare
AO356_07335 -2.6 -8.3 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) conserved
AO356_08235 -2.4 -9.1 histidine kinase compare
AO356_24845 -2.4 -3.5 ATPase compare
AO356_07325 -2.4 -10.6 fructose phosphotransferase system, IIB/IIC components (EC 2.7.1.202) (from data) conserved
AO356_16665 -2.4 -12.6 sulfate adenylyltransferase compare
AO356_16095 -2.4 -8.8 molecular chaperone DnaK compare
AO356_07915 -2.3 -2.7 exodeoxyribonuclease V subunit beta compare
AO356_07480 -2.3 -3.1 carbamoyl phosphate synthase large subunit compare
AO356_09795 -2.3 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_04560 -2.2 -2.9 serine peptidase compare
AO356_10000 -2.2 -5.3 hypothetical protein compare
AO356_02290 -2.2 -3.5 TetR family transcriptional regulator compare
AO356_10585 -2.2 -11.6 hypothetical protein compare
AO356_05670 -2.1 -2.8 recombinase RecA compare
AO356_08585 -2.1 -4.1 50S ribosomal protein L9 compare
AO356_19425 -2.1 -2.3 lipid A biosynthesis lauroyl acyltransferase compare
AO356_11315 -2.1 -1.4 shikimate dehydrogenase compare
AO356_16670 -2.1 -9.3 adenylylsulfate kinase compare
AO356_04575 -2.1 -10.0 RNA polymerase subunit sigma compare
AO356_06005 -2.0 -4.4 zinc metallopeptidase RseP compare
AO356_19520 -1.9 -4.3 isochorismatase compare
AO356_03435 -1.9 -3.8 integration host factor subunit beta compare
AO356_17950 -1.9 -7.8 histidine kinase compare
AO356_00880 -1.9 -3.1 integration host factor subunit alpha compare
AO356_02315 -1.9 -4.8 DNA topoisomerase I compare
AO356_10170 -1.8 -2.6 chemotaxis protein CheY compare
AO356_03405 -1.8 -4.3 serine acetyltransferase compare
AO356_07910 -1.8 -1.6 exodeoxyribonuclease V subunit alpha compare
AO356_03180 -1.7 -4.6 CysB family transcriptional regulator compare
AO356_25750 -1.7 -2.7 GntR family transcriptional regulator compare
AO356_27215 -1.7 -3.6 hypothetical protein compare
AO356_06960 -1.7 -6.2 histidinol-phosphate aminotransferase compare
AO356_27210 -1.6 -7.6 hypothetical protein compare
AO356_12990 -1.6 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
AO356_10005 -1.6 -7.6 branched-chain amino acid permease (azaleucine resistance) compare
AO356_10330 -1.6 -10.6 threonine dehydratase compare
AO356_03070 -1.6 -9.1 histidine kinase compare
AO356_18025 -1.5 -2.6 ATP-dependent DNA helicase RuvB compare
AO356_07390 -1.5 -2.0 polyribonucleotide nucleotidyltransferase compare
AO356_14020 -1.5 -2.2 hypothetical protein compare
AO356_12375 -1.5 -9.1 histidine kinase compare
AO356_18810 -1.5 -3.8 DNA-binding protein compare
AO356_03200 -1.5 -6.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO356_27250 -1.4 -4.8 hypothetical protein compare
AO356_09185 -1.4 -1.9 hypothetical protein compare
AO356_30345 -1.4 -4.7 IclR family transcriptional regulator compare
AO356_27205 -1.4 -6.2 hypothetical protein compare
AO356_03800 -1.4 -2.0 histidine kinase compare
AO356_11025 -1.4 -4.6 transcriptional regulator PhoU compare
AO356_19050 -1.4 -2.5 cysteine synthase compare
AO356_02190 -1.4 -5.9 hypothetical protein compare
AO356_12380 -1.3 -5.7 ATP-dependent DNA helicase RecG compare
AO356_12640 -1.3 -2.1 cytochrome C compare
AO356_00035 -1.3 -7.9 Fructokinase (EC 2.7.1.4) (from data) conserved
AO356_18020 -1.3 -3.1 ATP-dependent DNA helicase RuvA compare
AO356_18155 -1.3 -1.1 cold-shock protein compare
AO356_06990 -1.3 -4.0 toluene tolerance protein compare
AO356_27230 -1.3 -5.0 hypothetical protein compare
AO356_10075 -1.3 -5.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_06690 -1.3 -2.3 queuine tRNA-ribosyltransferase compare
AO356_27170 -1.2 -3.3 XRE family transcriptional regulator compare
AO356_19420 -1.2 -1.5 septum formation inhibitor compare
AO356_08875 -1.2 -2.4 toluene tolerance protein compare
AO356_05060 -1.2 -2.4 gluconokinase compare
AO356_03810 -1.2 -3.8 anti-anti-sigma factor compare
AO356_15815 -1.1 -1.5 gamma-glutamyl kinase compare
AO356_17485 -1.1 -3.7 elongation factor 4 compare
AO356_06385 -1.1 -2.8 recombinase XerD compare
AO356_02580 -1.1 -3.3 GntR family transcriptional regulator compare
AO356_03095 -1.1 -5.5 protease HtpX compare
AO356_07600 -1.1 -2.1 hypothetical protein compare
AO356_06170 -1.1 -4.5 hypothetical protein compare
AO356_04325 -1.1 -3.8 allophanate hydrolase compare
AO356_21330 -1.1 -6.4 aromatic amino acid aminotransferase compare
AO356_14135 -1.1 -8.1 biotin synthase compare
AO356_03365 -1.1 -2.8 UDP-N-acetylglucosamine 2-epimerase compare
AO356_28440 -1.1 -1.6 galactose 1-dehydrogenase compare
AO356_19900 -1.1 -6.3 lysine transporter LysE compare
AO356_12900 -1.1 -2.9 exopolyphosphatase compare
AO356_22825 -1.1 -2.6 transcriptional regulator compare
AO356_10140 -1.0 -5.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_05760 -1.0 -2.3 phage tail protein compare
AO356_12730 -1.0 -2.7 hypothetical protein compare
AO356_04970 -1.0 -4.9 aspartate-semialdehyde dehydrogenase compare
AO356_13395 -1.0 -1.2 non-canonical purine NTP pyrophosphatase compare
AO356_07000 -1.0 -2.6 ABC transporter permease compare
AO356_12485 -1.0 -2.4 DNA-directed RNA polymerase subunit omega compare
AO356_07105 -1.0 -4.4 hypothetical protein compare
AO356_11060 -1.0 -6.4 aldose epimerase compare
AO356_11355 -1.0 -7.1 hypothetical protein compare
AO356_14400 -1.0 -3.4 polyamine ABC transporter permease compare
AO356_07020 -1.0 -1.5 LPS export ABC transporter periplasmic protein LptC compare
AO356_04055 -1.0 -1.5 hypothetical protein compare
AO356_08870 -1.0 -4.9 polymerase compare
AO356_03355 -1.0 -2.4 hypothetical protein compare
AO356_06615 -1.0 -1.1 FeS assembly protein IscX compare
AO356_27925 -1.0 -2.4 MarR family transcriptional regulator compare
AO356_01555 -1.0 -5.0 acyl-CoA dehydrogenase compare
AO356_17830 -1.0 -3.2 pyruvate kinase compare
AO356_08880 -0.9 -3.9 glycosyl transferase compare
AO356_18245 -0.9 -4.4 DeoR family transcriptional regulator compare
AO356_20475 -0.9 -1.6 hypothetical protein compare
AO356_07495 -0.9 -2.1 molecular chaperone DnaJ compare
AO356_16450 -0.9 -2.5 GTP-binding protein compare
AO356_18725 -0.9 -3.5 acetylornithine aminotransferase compare
AO356_27180 -0.9 -2.4 hypothetical protein compare
AO356_02095 -0.9 -2.7 hypothetical protein compare
AO356_04330 -0.9 -3.3 allophanate hydrolase compare
AO356_09325 -0.9 -2.9 type II secretion system protein GspH compare
AO356_27235 -0.9 -3.6 hypothetical protein compare
AO356_21275 -0.9 -1.3 peptidase compare
AO356_20875 -0.9 -4.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_12785 -0.9 -6.1 chemotaxis protein CheY compare
AO356_27405 -0.9 -1.5 MarR family transcriptional regulator compare
AO356_10485 -0.9 -1.3 hypothetical protein compare
AO356_03415 -0.9 -5.0 oxidoreductase compare
AO356_26820 -0.9 -2.5 hypothetical protein compare
AO356_06995 -0.9 -3.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_16655 -0.9 -4.6 2-alkenal reductase compare
AO356_16435 -0.9 -1.5 hypothetical protein compare
AO356_01245 -0.9 -5.0 glycogen branching protein compare
AO356_27445 -0.8 -4.0 IclR family transcriptional regulator compare
AO356_22950 -0.8 -1.2 peptidylprolyl isomerase compare
AO356_07195 -0.8 -3.7 GntR family transcriptional regulator compare
AO356_19925 -0.8 -4.7 AsnC family transcriptional regulator compare
AO356_03400 -0.8 -3.2 aminotransferase DegT compare
AO356_15140 -0.8 -0.8 homoserine dehydrogenase compare
AO356_14820 -0.8 -1.6 Isochorismatase compare
AO356_11610 -0.8 -1.3 glycerol acyltransferase compare
AO356_08280 -0.8 -2.7 oxidoreductase compare
AO356_28200 -0.8 -5.0 macrolide transporter compare
AO356_15290 -0.8 -2.4 gamma-glutamyl phosphate reductase compare
AO356_16870 -0.8 -5.1 benzoate transporter compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Fructose in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Fructose across organisms