Experiment set1IT002 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Fructose carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_27690 +3.2 23.7 mannitol dehydrogenase compare
AO356_12515 +2.7 12.4 exodeoxyribonuclease III compare
AO356_23155 +1.8 12.1 RpiR family transcriptional regulator compare
AO356_03855 +1.7 13.6 AAA family ATPase compare
AO356_09540 +1.6 1.7 twin-arginine protein translocation system subunit TatC compare
AO356_09560 +1.4 12.4 glucosyltransferase MdoH compare
AO356_09565 +1.4 10.6 glucan biosynthesis protein G compare
AO356_17065 +1.1 1.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_27695 +1.1 5.6 Xylulose kinase (EC 2.7.1.17) (from data) conserved
AO356_18920 +1.1 6.9 flagellar basal-body rod protein FlgC compare
AO356_00170 +1.0 1.7 lytic transglycosylase compare
AO356_03930 +1.0 3.7 flagellar biosynthesis protein FlgF compare
AO356_03820 +1.0 7.9 flagellar protein export ATPase FliI compare
AO356_18915 +1.0 6.3 flagellar biosynthesis protein FlgB compare
AO356_03760 +1.0 5.0 flagellar biosynthetic protein FliR compare
AO356_27700 +1.0 4.6 fructokinase compare
AO356_11420 +1.0 6.7 histidine kinase compare
AO356_03770 +1.0 4.9 flagellar biosynthesis protein flip compare
AO356_19515 +0.9 1.6 hypothetical protein compare
AO356_03775 +0.9 1.9 flagellar assembly protein FliO compare
AO356_18930 +0.9 8.1 flagellar biosynthesis protein FlgE compare
AO356_03765 +0.9 5.6 flagellar biosynthetic protein FliQ compare
AO356_25360 +0.9 1.4 dimethylmenaquinone methyltransferase compare
AO356_05200 +0.9 6.0 D-mannose isomerase (EC 5.3.1.7) (from data) compare
AO356_15260 +0.9 1.3 dehydratase compare
AO356_21685 +0.9 1.6 hypothetical protein compare
AO356_28710 +0.8 2.1 aldehyde dehydrogenase compare
AO356_19840 +0.8 4.4 histidine kinase compare
AO356_27365 +0.8 2.5 nitrile hydratase subunit beta compare
AO356_00875 +0.8 3.6 MerR family transcriptional regulator compare
AO356_03785 +0.8 5.9 flagellar motor switch protein FliM compare
AO356_19300 +0.8 6.6 peptidylprolyl isomerase compare
AO356_03910 +0.8 6.0 flagellar biosynthesis protein FlgJ compare
AO356_03925 +0.8 5.2 flagellar basal-body rod protein FlgG compare
AO356_21220 +0.8 1.4 peptide ABC transporter substrate-binding protein compare
AO356_08910 +0.8 3.2 carbamoyltransferase compare
AO356_03825 +0.8 3.7 flagellar assembly protein FliH compare
AO356_18925 +0.8 4.6 flagellar biosynthesis protein FlgD compare
AO356_04565 +0.8 5.5 RNA polymerase subunit sigma compare
AO356_11055 +0.8 2.5 long-chain acyl-CoA thioester hydrolase compare
AO356_03920 +0.7 5.6 flagellar basal body L-ring protein compare
AO356_02955 +0.7 1.5 hypothetical protein compare
AO356_18900 +0.7 4.8 flagellar biosynthesis protein FlgA compare
AO356_08710 +0.7 6.2 flagellar motor stator protein MotA compare
AO356_01505 +0.7 3.4 isochorismatase compare
AO356_10570 +0.7 6.8 large adhesive protein compare
AO356_17840 +0.7 1.6 pilus assembly protein PilZ compare
AO356_10555 +0.7 6.0 hemolysin secretion protein D compare
AO356_24125 +0.7 2.8 hypothetical protein compare
AO356_07190 +0.7 2.5 hypothetical protein compare
AO356_03745 +0.7 5.9 flagellar biosynthesis protein FlhA compare
AO356_03680 +0.7 5.7 chemotaxis protein compare
AO356_15990 +0.7 1.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
AO356_05205 +0.7 4.4 histidine kinase compare
AO356_05195 +0.7 4.9 sugar ABC transporter substrate-binding protein compare
AO356_09095 +0.7 2.1 hypothetical protein compare
AO356_14050 +0.7 1.2 glutathione S-transferase compare
AO356_08705 +0.7 4.3 flagellar motor protein MotB compare
AO356_03840 +0.7 3.7 flagellar hook-basal body protein FliE compare
AO356_03835 +0.7 5.2 flagellar M-ring protein FliF compare
AO356_18890 +0.6 2.1 flagellar biosynthesis protein FlgN compare
AO356_11185 +0.6 3.4 cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion compare
AO356_10560 +0.6 5.5 ABC transporter compare
AO356_15325 +0.6 1.6 hypothetical protein compare
AO356_14505 +0.6 1.7 peptidase M23 compare
AO356_14500 +0.6 4.6 anhydro-N-acetylmuramic acid kinase compare
AO356_27525 +0.6 3.3 cytochrome B compare
AO356_05315 +0.6 2.1 hypothetical protein compare
AO356_23595 +0.6 1.2 short-chain dehydrogenase compare
AO356_28595 +0.6 1.9 transcriptional regulator compare
AO356_20600 +0.6 1.1 phage tail protein compare
AO356_16890 +0.6 2.1 hypothetical protein compare
AO356_21515 +0.6 1.3 antitoxin compare
AO356_26245 +0.6 1.1 energy transducer TonB compare
AO356_10580 +0.6 4.1 hypothetical protein compare
AO356_01525 +0.6 3.2 arginine N-succinyltransferase compare
AO356_20220 +0.6 3.9 hypothetical protein compare
AO356_06360 +0.6 1.0 hypothetical protein compare
AO356_09420 +0.6 5.3 peptidase compare
AO356_10070 +0.6 3.2 thioesterase compare
AO356_06280 +0.6 2.6 hypothetical protein compare
AO356_20335 +0.6 1.6 hypothetical protein compare
AO356_13275 +0.6 1.1 multidrug transporter compare
AO356_28040 +0.6 1.9 quinoprotein dehydrogenase-associated SoxYZ-like carrier compare
AO356_25720 +0.6 1.1 polyamine ABC transporter permease compare
AO356_13000 +0.6 3.8 hypothetical protein compare
AO356_29590 +0.6 1.7 ester cyclase compare
AO356_03815 +0.6 2.3 flagellar biogenesis protein compare
AO356_27165 +0.6 1.7 hypothetical protein compare
AO356_30035 +0.6 1.4 aminomethyltransferase compare
AO356_13695 +0.6 1.7 hypothetical protein compare
AO356_03730 +0.6 4.2 flagellar biosynthesis sigma factor compare
AO356_03880 +0.5 3.5 flagellin compare
AO356_05210 +0.5 1.9 chemotaxis protein CheY compare
AO356_04580 +0.5 4.5 L-aspartate oxidase compare
AO356_16320 +0.5 2.2 hypothetical protein compare
AO356_21175 +0.5 2.4 RNA polymerase subunit sigma compare
AO356_28610 +0.5 1.2 AraC family transcriptional regulator compare
AO356_04020 +0.5 1.9 AraC family transcriptional regulator compare
AO356_14355 +0.5 3.9 aminoglycoside phosphotransferase compare
AO356_04355 +0.5 1.6 MFS transporter compare
AO356_01230 +0.5 1.3 GntR family transcriptional regulator compare
AO356_19240 +0.5 1.1 cupin compare
AO356_27090 +0.5 2.6 amino acid transporter compare
AO356_20260 +0.5 1.3 termination factor Rho compare
AO356_07375 +0.5 2.2 dephospho-CoA kinase compare
AO356_20595 +0.5 2.5 phage tail protein compare
AO356_03795 +0.5 3.8 flagellar hook-length control protein compare
AO356_01985 +0.5 0.9 head completion/stabilization protein compare
AO356_19610 +0.5 1.9 2-hydroxy-3-oxopropionate reductase compare
AO356_13035 +0.5 4.3 glycine cleavage system protein T compare
AO356_18475 +0.5 1.7 chemotaxis protein CheY compare
AO356_08455 +0.5 1.5 urease accessory protein UreF compare
AO356_28475 +0.5 1.5 hypothetical protein compare
AO356_28000 +0.5 1.2 Rrf2 family transcriptional regulator compare
AO356_03755 +0.5 3.9 flagellar biosynthetic protein FlhB compare
AO356_15440 +0.5 4.7 histidine kinase compare
AO356_06890 +0.5 1.5 cysteine methyltransferase compare
AO356_23500 +0.5 3.3 TetR family transcriptional regulator compare
AO356_20845 +0.5 2.7 alpha-L-glutamate ligase compare
AO356_08930 +0.5 1.2 heptose kinase compare
AO356_08150 +0.5 2.7 type VI secretion protein compare
AO356_27795 +0.5 2.4 hypothetical protein compare
AO356_10575 +0.5 1.6 tryptophan synthase subunit beta compare
AO356_01265 +0.5 2.1 hypothetical protein compare
AO356_02325 +0.5 1.0 3-ketoacyl-CoA thiolase compare
AO356_10565 +0.5 4.1 channel protein TolC compare
AO356_26655 +0.5 0.9 (2Fe-2S)-binding protein compare
AO356_22090 +0.5 1.9 GNAT family acetyltransferase compare
AO356_29515 +0.5 0.7 energy transducer TonB compare
AO356_09080 +0.5 1.4 thioredoxin compare
AO356_10935 +0.5 1.4 hypothetical protein compare
AO356_03830 +0.5 2.9 flagellar motor switch protein FliG compare
AO356_28160 +0.5 1.1 hypothetical protein compare
AO356_02270 +0.5 4.1 transcription-repair coupling factor compare
AO356_04875 +0.5 2.7 antibiotic transporter compare
AO356_07665 +0.5 1.6 hypothetical protein compare
AO356_18480 +0.5 0.9 translation initiation factor 2 compare
AO356_26360 +0.5 1.3 enoyl-CoA hydratase compare
AO356_09380 +0.5 3.5 cell division protein compare
AO356_01940 +0.5 1.1 hypothetical protein compare
AO356_27875 +0.5 1.5 ketosteroid isomerase compare
AO356_06325 +0.5 0.8 plasmid stabilization protein ParE compare
AO356_03915 +0.5 2.7 flagellar biosynthesis protein FlgI compare
AO356_04885 +0.4 2.6 multidrug transporter compare
AO356_17380 +0.4 3.3 amino acid ABC transporter substrate-binding protein compare
AO356_00530 +0.4 1.7 precorrin-4 C11-methyltransferase compare
AO356_08325 +0.4 1.2 predicted copper homeostasis protein (from data) compare
AO356_24735 +0.4 1.9 TonB-dependent outer membrane receptor compare
AO356_27630 +0.4 1.8 chemotaxis protein CheY compare
AO356_27505 +0.4 1.6 transcriptional regulator compare
AO356_26090 +0.4 1.7 Vanillate O-demethylase oxidoreductase compare
AO356_13505 +0.4 1.3 chemotaxis protein compare
AO356_24365 +0.4 2.4 type VI secretion system protein ImpK compare
AO356_18605 +0.4 1.5 XRE family transcriptional regulator compare
AO356_00125 +0.4 1.1 hypothetical protein compare
AO356_22095 +0.4 2.2 cupin compare
AO356_20935 +0.4 1.2 antibiotic biosynthesis monooxygenase compare
AO356_15330 +0.4 2.1 D-alanyl-D-alanine carboxypeptidase compare
AO356_26710 +0.4 1.8 2-haloalkanoic acid dehalogenase compare
AO356_02360 +0.4 1.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO356_09165 +0.4 1.3 glycosyl transferase compare
AO356_26455 +0.4 0.9 hypothetical protein compare
AO356_03280 +0.4 2.5 metal-chelation protein CHAD compare
AO356_25095 +0.4 1.5 cytochrome C compare
AO356_21035 +0.4 2.1 hypothetical protein compare
AO356_04420 +0.4 1.3 ribonuclease D compare
AO356_16260 +0.4 2.1 ribosomal-protein-alanine acetyltransferase compare
AO356_07200 +0.4 3.7 ABC transporter ATP-binding protein compare
AO356_09245 +0.4 2.2 ABC transporter permease compare
AO356_22395 +0.4 1.9 aldehyde-activating protein compare
AO356_21430 +0.4 3.3 peptidoglycan-binding protein compare
AO356_28955 +0.4 1.6 hypothetical protein compare
AO356_02005 +0.4 1.1 hypothetical protein compare
AO356_25890 +0.4 1.9 enoyl-CoA hydratase compare
AO356_03905 +0.4 2.9 flagellar biosynthesis protein FlgK compare
AO356_00575 +0.4 1.2 SCP-2 family sterol carrier protein compare
AO356_17575 +0.4 1.2 hypothetical protein compare
AO356_09355 +0.4 1.8 cytochrome B compare
AO356_03850 +0.4 2.3 histidine kinase compare
AO356_18415 +0.4 3.0 XRE family transcriptional regulator compare
AO356_27510 +0.4 1.7 AraC family transcriptional regulator compare
AO356_15930 +0.4 1.7 laccase compare
AO356_04935 +0.4 1.3 3-oxoadipate--succinyl-CoA transferase compare
AO356_12000 +0.4 1.4 hypothetical protein compare
AO356_26385 +0.4 1.7 LysR family transcriptional regulator compare
AO356_04880 +0.4 3.4 multidrug transporter compare
AO356_01370 +0.4 1.8 delta-aminolevulinic acid dehydratase compare
AO356_03845 +0.4 2.1 Fis family transcriptional regulator compare
AO356_22795 +0.4 0.7 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_23485 +0.4 2.7 haloacid dehalogenase compare
AO356_30000 +0.4 1.1 hypothetical protein compare
AO356_22515 +0.4 2.2 hypothetical protein compare
AO356_09750 +0.4 2.3 rRNA methylase compare
AO356_14885 +0.4 2.2 hypothetical protein compare
AO356_27290 +0.4 1.6 cytochrome B compare
AO356_09570 +0.4 2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
AO356_02465 +0.4 0.5 carbonate dehydratase compare
AO356_00805 +0.4 1.8 glycosyl transferase compare
AO356_21320 +0.4 0.6 tRNA-Asn compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Fructose in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Fructose across organisms