Experiment set1IT002 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Cobalt chloride hexahydrate 0.04 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23545 +1.2 2.5 NADH dehydrogenase subunit D compare
CA265_RS18805 +1.2 2.3 hypothetical protein compare
CA265_RS00335 +1.1 2.3 hypothetical protein compare
CA265_RS14825 +1.0 2.8 outer membrane protein assembly factor BamD compare
CA265_RS02795 +1.0 2.4 hypothetical protein compare
CA265_RS24605 +1.0 2.3 hypothetical protein compare
CA265_RS18495 +1.0 2.3 hypothetical protein compare
CA265_RS00490 +0.9 1.8 hypothetical protein compare
CA265_RS23265 +0.9 2.6 iron-binding protein compare
CA265_RS24385 +0.8 1.8 GNAT family N-acetyltransferase compare
CA265_RS02425 +0.8 2.5 GTP cyclohydrolase compare
CA265_RS24480 +0.8 2.3 hypothetical protein compare
CA265_RS13240 +0.8 2.3 preprotein translocase subunit YajC compare
CA265_RS12780 +0.7 1.9 hypothetical protein compare
CA265_RS10235 +0.7 1.7 hypothetical protein compare
CA265_RS10540 +0.7 1.8 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS18275 +0.6 2.6 pyrophosphatase compare
CA265_RS15200 +0.6 2.1 hypothetical protein compare
CA265_RS16785 +0.6 1.2 50S ribosomal protein L17 compare
CA265_RS00040 +0.6 1.9 hypothetical protein compare
CA265_RS11855 +0.6 2.6 hypothetical protein compare
CA265_RS19465 +0.6 1.6 protein tyrosine phosphatase compare
CA265_RS18770 +0.6 3.5 hypothetical protein compare
CA265_RS19405 +0.6 2.4 transcriptional regulator compare
CA265_RS17560 +0.6 4.1 peptidylprolyl isomerase compare
CA265_RS19940 +0.6 4.7 hypothetical protein compare
CA265_RS25280 +0.6 3.1 four helix bundle protein compare
CA265_RS19740 +0.6 2.4 gliding motility lipoprotein GldD compare
CA265_RS12745 +0.6 2.0 NUDIX hydrolase compare
CA265_RS19685 +0.6 3.3 hypothetical protein compare
CA265_RS23520 +0.6 3.9 phosphate ABC transporter substrate-binding protein compare
CA265_RS24455 +0.5 2.6 hypothetical protein compare
CA265_RS19615 +0.5 2.7 metal-dependent hydrolase compare
CA265_RS25395 +0.5 3.2 cysteine hydrolase compare
CA265_RS10000 +0.5 1.6 nitrite reductase small subunit compare
CA265_RS10480 +0.5 3.0 hypothetical protein compare
CA265_RS19910 +0.5 2.3 GDSL family lipase compare
CA265_RS18530 +0.5 1.3 aspartate aminotransferase family protein compare
CA265_RS23305 +0.5 0.9 hypothetical protein compare
CA265_RS03370 +0.5 2.9 glycosyltransferase compare
CA265_RS20225 +0.5 1.1 DNA (cytosine-5-)-methyltransferase compare
CA265_RS23515 +0.5 2.4 hypothetical protein compare
CA265_RS17555 +0.5 3.9 hypothetical protein compare
CA265_RS21030 +0.5 2.1 hypothetical protein compare
CA265_RS15175 +0.5 2.7 thioredoxin-dependent thiol peroxidase compare
CA265_RS18225 +0.5 3.1 DNA-binding response regulator compare
CA265_RS19535 +0.5 3.1 hypothetical protein compare
CA265_RS19970 +0.5 2.9 cyclic nucleotide-binding protein compare
CA265_RS22800 +0.5 3.6 glycosyl transferase compare
CA265_RS06180 +0.5 2.6 hypothetical protein compare
CA265_RS03530 +0.5 2.2 hypothetical protein compare
CA265_RS23090 +0.5 2.0 transcriptional regulator compare
CA265_RS01900 +0.5 2.5 hypothetical protein compare
CA265_RS04865 +0.5 2.1 DUF4440 domain-containing protein compare
CA265_RS01225 +0.5 2.6 hypothetical protein compare
CA265_RS23505 +0.5 1.5 biopolymer transporter ExbD compare
CA265_RS20320 +0.5 4.4 hypothetical protein compare
CA265_RS10875 +0.5 1.9 hypothetical protein compare
CA265_RS01200 +0.5 2.2 hypothetical protein compare
CA265_RS03385 +0.5 2.3 hypothetical protein compare
CA265_RS02550 +0.5 1.2 tRNA-Phe compare
CA265_RS23895 +0.5 1.9 preprotein translocase compare
CA265_RS06585 +0.5 2.4 hypothetical protein compare
CA265_RS00270 +0.5 1.6 hypothetical protein compare
CA265_RS23675 +0.4 0.8 hypothetical protein compare
CA265_RS24910 +0.4 1.4 GNAT family N-acetyltransferase compare
CA265_RS17940 +0.4 1.9 hypothetical protein compare
CA265_RS23235 +0.4 1.6 transcriptional regulator compare
CA265_RS19945 +0.4 2.1 hypothetical protein compare
CA265_RS21255 +0.4 3.2 hypothetical protein compare
CA265_RS04705 +0.4 2.3 hypothetical protein compare
CA265_RS22260 +0.4 2.5 hypothetical protein compare
CA265_RS16945 +0.4 1.3 hypothetical protein compare
CA265_RS17095 +0.4 1.8 SAM-dependent methyltransferase compare
CA265_RS24790 +0.4 2.9 peptidylprolyl isomerase compare
CA265_RS19030 +0.4 2.5 hypothetical protein compare
CA265_RS18120 +0.4 3.2 gliding motility protein GldM compare
CA265_RS01320 +0.4 1.0 hypothetical protein compare
CA265_RS18125 +0.4 2.6 gliding motility protein GldL compare
CA265_RS04040 +0.4 1.2 hypothetical protein compare
CA265_RS00925 +0.4 2.5 hypothetical protein compare
CA265_RS11800 +0.4 2.4 hypothetical protein compare
CA265_RS25000 +0.4 1.9 hypothetical protein compare
CA265_RS01770 +0.4 2.0 hypothetical protein compare
CA265_RS19100 +0.4 1.6 damage-inducible protein DinB compare
CA265_RS20315 +0.4 3.3 hypothetical protein compare
CA265_RS22860 +0.4 1.2 hypothetical protein compare
CA265_RS20440 +0.4 2.0 hypothetical protein compare
CA265_RS25345 +0.4 1.7 hypothetical protein compare
CA265_RS10430 +0.4 2.2 hypothetical protein compare
CA265_RS18115 +0.4 2.6 gliding motility protein GldN compare
CA265_RS23485 +0.4 1.1 hypothetical protein compare
CA265_RS21525 +0.4 1.6 hypothetical protein compare
CA265_RS18420 +0.4 2.1 hypothetical protein compare
CA265_RS11995 +0.4 1.9 RNA polymerase subunit sigma compare
CA265_RS11900 +0.4 1.8 hypothetical protein compare
CA265_RS14435 +0.4 2.2 GNAT family N-acetyltransferase compare
CA265_RS06305 +0.4 2.5 succinyl-CoA--3-ketoacid-CoA transferase compare
CA265_RS14615 +0.4 1.3 hypothetical protein compare
CA265_RS11010 +0.4 2.8 hypothetical protein compare
CA265_RS00380 +0.4 2.0 hypothetical protein compare
CA265_RS11125 +0.4 1.7 hypothetical protein compare
CA265_RS20395 +0.4 1.4 hypothetical protein compare
CA265_RS17390 +0.4 2.0 PadR family transcriptional regulator compare
CA265_RS19345 +0.4 2.2 hypothetical protein compare
CA265_RS23890 +0.4 0.9 hypothetical protein compare
CA265_RS04995 +0.4 1.8 hypothetical protein compare
CA265_RS21715 +0.4 1.9 hypothetical protein compare
CA265_RS25410 +0.4 2.4 gluconate kinase compare
CA265_RS19170 +0.4 2.3 chromosome segregation protein ScpA compare
CA265_RS21865 +0.4 2.6 two-component sensor histidine kinase compare
CA265_RS21425 +0.4 2.6 hypothetical protein compare
CA265_RS02750 +0.4 1.9 hypothetical protein compare
CA265_RS22455 +0.4 2.0 hypothetical protein compare
CA265_RS22720 +0.4 1.0 hypothetical protein compare
CA265_RS18030 +0.4 1.8 hypothetical protein compare
CA265_RS16130 +0.4 1.0 cell division protein FtsX compare
CA265_RS24965 +0.4 2.0 hypothetical protein compare
CA265_RS19640 +0.4 1.5 hypothetical protein compare
CA265_RS01095 +0.4 2.4 transcriptional regulator compare
CA265_RS17275 +0.4 1.9 GDSL family lipase compare
CA265_RS20930 +0.4 2.3 hypothetical protein compare
CA265_RS14650 +0.4 1.7 thiol-disulfide oxidoreductase compare
CA265_RS13220 +0.4 2.0 hypothetical protein compare
CA265_RS18485 +0.4 1.1 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS12750 +0.4 2.3 hypothetical protein compare
CA265_RS17115 +0.4 1.4 arsenate reductase compare
CA265_RS08195 +0.4 2.5 hypothetical protein compare
CA265_RS24650 +0.4 1.4 beta-phosphoglucomutase compare
CA265_RS25160 +0.3 1.3 glycosyl transferase family 2 compare
CA265_RS02315 +0.3 1.7 single-stranded DNA-binding protein compare
CA265_RS00395 +0.3 1.2 hypothetical protein compare
CA265_RS11090 +0.3 2.6 hypothetical protein compare
CA265_RS24040 +0.3 1.2 seryl-tRNA synthetase compare
CA265_RS21580 +0.3 0.9 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS22805 +0.3 1.9 glycosyl transferase compare
CA265_RS25365 +0.3 1.6 glycerol acyltransferase compare
CA265_RS19860 +0.3 2.2 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data) compare
CA265_RS19455 +0.3 2.2 hypothetical protein compare
CA265_RS22475 +0.3 1.5 hypothetical protein compare
CA265_RS04810 +0.3 1.8 response regulator compare
CA265_RS14595 +0.3 2.5 signal peptidase I compare
CA265_RS23260 +0.3 2.0 AraC family transcriptional regulator compare
CA265_RS05960 +0.3 2.3 short-chain dehydrogenase compare
CA265_RS06170 +0.3 1.5 hypothetical protein compare
CA265_RS03155 +0.3 1.7 hypothetical protein compare
CA265_RS09935 +0.3 1.6 hypothetical protein compare
CA265_RS03640 +0.3 1.8 ATP phosphoribosyltransferase compare
CA265_RS23830 +0.3 1.7 protein tyrosine phosphatase compare
CA265_RS02170 +0.3 1.3 hypothetical protein compare
CA265_RS17865 +0.3 1.9 hypothetical protein compare
CA265_RS18790 +0.3 1.5 four helix bundle protein compare
CA265_RS24815 +0.3 1.1 hypothetical protein compare
CA265_RS11925 +0.3 1.6 hypothetical protein compare
CA265_RS20095 +0.3 1.3 NADH oxidase compare
CA265_RS20425 +0.3 2.1 magnesium chelatase compare
CA265_RS09425 +0.3 0.8 hypothetical protein compare
CA265_RS05880 +0.3 2.4 DNA-binding response regulator compare
CA265_RS14390 +0.3 1.3 hypothetical protein compare
CA265_RS08820 +0.3 2.2 hypothetical protein compare
CA265_RS08965 +0.3 2.0 thioesterase compare
CA265_RS09650 +0.3 1.0 diaminopimelate decarboxylase compare
CA265_RS02090 +0.3 1.4 ABC transporter ATP-binding protein compare
CA265_RS20235 +0.3 1.1 hypothetical protein compare
CA265_RS02105 +0.3 1.8 hypothetical protein compare
CA265_RS19420 +0.3 0.4 hypothetical protein compare
CA265_RS00165 +0.3 1.6 hypothetical protein compare
CA265_RS17360 +0.3 1.4 hypothetical protein compare
CA265_RS03050 +0.3 1.6 hypothetical protein compare
CA265_RS22310 +0.3 1.0 superoxide dismutase compare
CA265_RS19655 +0.3 1.6 carboxymuconolactone decarboxylase family protein compare
CA265_RS11480 +0.3 1.0 VOC family protein compare
CA265_RS15280 +0.3 1.8 glycine C-acetyltransferase compare
CA265_RS21455 +0.3 1.8 Formiminoglutamase (EC 3.5.3.8) (from data) compare
CA265_RS10740 +0.3 2.4 DNA-binding response regulator compare
CA265_RS13555 +0.3 1.8 hypothetical protein compare
CA265_RS18090 +0.3 2.7 gliding motility protein compare
CA265_RS04790 +0.3 1.3 hypothetical protein compare
CA265_RS00830 +0.3 0.9 hypothetical protein compare
CA265_RS02125 +0.3 1.8 hypothetical protein compare
CA265_RS22850 +0.3 2.0 MFS transporter compare
CA265_RS12805 +0.3 1.7 hypothetical protein compare
CA265_RS19660 +0.3 1.5 hypothetical protein compare
CA265_RS20330 +0.3 2.4 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA265_RS22985 +0.3 2.3 helicase SNF2 compare
CA265_RS01195 +0.3 1.6 hypothetical protein compare
CA265_RS01055 +0.3 1.3 hypothetical protein compare
CA265_RS24995 +0.3 1.1 hypothetical protein compare
CA265_RS17040 +0.3 1.3 hypothetical protein compare
CA265_RS17060 +0.3 1.9 adenylyl-sulfate kinase compare
CA265_RS25060 +0.3 0.8 hypothetical protein compare
CA265_RS04335 +0.3 2.1 hypothetical protein compare
CA265_RS12665 +0.3 0.5 cold-shock protein compare
CA265_RS24625 +0.3 2.1 LacI family transcriptional regulator compare
CA265_RS19055 +0.3 1.7 nitronate monooxygenase compare
CA265_RS02040 +0.3 1.1 N-acetyltransferase compare
CA265_RS20205 +0.3 1.7 very short patch repair endonuclease compare
CA265_RS21245 +0.3 2.4 hypothetical protein compare
CA265_RS19960 +0.3 1.3 hypothetical protein compare
CA265_RS21390 +0.3 1.4 metal-dependent hydrolase compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Cobalt chloride hexahydrate across organisms