Experiment set1IT001 for Sinorhizobium meliloti 1021

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02123 -8.7 -3.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01726 -8.4 -5.8 acetylglutamate kinase compare
SMc02766 -8.2 -9.7 tryptophan synthase subunit beta compare
SMc02245 -8.0 -5.5 dihydroorotate dehydrogenase 2 compare
SMc00235 -7.9 -5.5 anthranilate phosphoribosyltransferase compare
SMc02767 -7.9 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00236 -7.9 -5.4 Indole-3-glycerol phosphate synthase compare
SMc03797 -7.9 -7.7 homoserine O-succinyltransferase compare
SMc01494 -7.8 -9.2 phosphoserine phosphatase compare
SMc02572 -7.7 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
SMc00917 -7.6 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00495 -7.6 -5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc04002 -7.6 -7.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02569 -7.6 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
SMc01801 -7.5 -5.1 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc00640 -7.4 -7.2 phosphoserine aminotransferase compare
SMc02717 -7.3 -8.7 2-isopropylmalate synthase compare
SMc02899 -7.3 -11.1 prephenate dehydratase compare
SMc01843 -7.2 -11.1 5,10-methylenetetrahydrofolate reductase compare
SMc02217 -7.0 -4.8 O-succinylhomoserine sulfhydrylase compare
SMc02137 -6.9 -4.8 ornithine carbamoyltransferase compare
SMc02725 -6.9 -11.6 anthranilate synthase compare
SMc04045 -6.9 -6.7 dihydroxy-acid dehydratase compare
SMc04405 -6.8 -9.4 3-isopropylmalate dehydrogenase compare
SMc00993 -6.8 -8.2 phosphoribosylamine--glycine ligase compare
SMc03823 -6.8 -13.1 isopropylmalate isomerase large subunit compare
SMc01431 -6.8 -10.4 acetolactate synthase 3 catalytic subunit compare
SMc00963 -6.7 -6.5 hypothetical protein compare
SMc01361 -6.6 -4.6 dihydroorotase compare
SMc03777 -6.6 -6.4 gamma-glutamyl phosphate reductase compare
SMc00494 -6.6 -2.6 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00918 -6.5 -9.0 ATP phosphoribosyltransferase regulatory subunit compare
SMc02765 -6.5 -10.8 tryptophan synthase subunit alpha compare
SMc00614 -6.5 -7.7 phosphoribosylglycinamide formyltransferase compare
SMc04028 -6.4 -15.0 glutamate synthase compare
SMa1635 -6.4 -2.5 hypothetical protein compare
SMc03895 -6.4 -16.5 pyruvate carboxylase compare
SMc00711 -6.4 -5.3 cyclohexadienyl dehydrogenase compare
SMc01004 -6.3 -12.1 phosphoribosyl-AMP cyclohydrolase compare
SMc03776 -6.3 -4.3 gamma-glutamyl kinase compare
SMc00412 -6.3 -4.3 orotidine 5'-phosphate decarboxylase compare
SMc00090 -6.2 -12.0 sulfate adenylyltransferase compare
SMc04026 -6.2 -9.4 glutamate synthase compare
SMc00554 -6.2 -8.4 amidophosphoribosyltransferase compare
SMc02165 -6.1 -7.2 orotate phosphoribosyltransferase compare
SMc03112 -6.0 -15.2 B12-dependent methionine synthase compare
SMc00488 -6.0 -16.7 phosphoribosylformylglycinamidine synthase II compare
SMc01360 -6.0 -4.1 aspartate carbamoyltransferase catalytic subunit compare
SMc02574 -6.0 -7.1 imidazoleglycerol-phosphate dehydratase compare
SMc02166 -5.9 -12.6 dihydroorotase compare
SMc03826 -5.9 -4.1 argininosuccinate synthase compare
SMc00493 -5.9 -7.0 phosphoribosylformylglycinamidine synthase I compare
SMc00131 -5.8 -15.9 transcriptional regulator compare
SMc03100 -5.7 -3.8 hypothetical protein compare
SMc03070 -5.7 -7.8 glucose-6-phosphate 1-dehydrogenase compare
SMc00615 -5.6 -6.7 phosphoribosylaminoimidazole synthetase compare
SMc01881 -5.5 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01054 -5.5 -4.6 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc04088 -5.4 -8.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03229 -5.3 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00815 -5.3 -3.6 inosine 5'-monophosphate dehydrogenase compare
SMc00092 -5.2 -11.5 phosphoadenosine phosphosulfate reductase compare
SMc02124 -5.2 -15.3 nitrite reductase compare
SMc00293 -5.0 -11.3 homoserine dehydrogenase compare
SMc01206 -5.0 -2.8 queuine tRNA-ribosyltransferase compare
SM_b21174 -4.9 -6.8 phosphate uptake ABC transporter permease compare
SMc02307 -4.9 -8.3 histidinol dehydrogenase compare
SMc01880 -4.9 -3.4 pantoate--beta-alanine ligase compare
SMc00091 -4.8 -10.1 sulfate adenylyltransferase compare
SMc00876 -4.7 -6.5 ATP-binding MRP protein compare
SMc01569 -4.7 -2.5 carbamoyl phosphate synthase small subunit compare
SMc04005 -4.7 -9.5 pyruvate kinase compare
SM_b21177 -4.6 -8.3 phosphate uptake ABC transporter ATP-binding protein compare
SM_b21175 -4.5 -4.2 phosphate uptake ABC transporter permease compare
SMc02425 -4.5 -5.8 transcriptional regulator compare
SMc02755 -4.5 -7.5 S-adenosyl-L-homocysteine hydrolase compare
SMc00641 -4.3 -6.4 D-3-phosphoglycerate dehydrogenase compare
SMc04001 -4.3 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc01770 -4.3 -2.0 serine hydroxymethyltransferase compare
SMc03978 -4.3 -4.2 transketolase compare
SMc01215 -4.2 -4.1 carbamoyl phosphate synthase large subunit compare
SMc02570 -4.2 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00017 -4.2 -2.3 homoserine kinase compare
SMc02246 -4.1 -1.6 hypothetical protein compare
SMc00294 -4.1 -11.3 aminotransferase compare
SMc02138 -4.0 -7.0 acetylornithine transaminase compare
SMc03763 -4.0 -3.9 cytosine-specific methyltransferase compare
SMc03068 -3.9 -9.3 phosphogluconate dehydratase compare
SMc02707 -3.9 -5.3 hypothetical protein compare
SM_b21176 -3.9 -5.9 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc01053 -3.8 -4.9 siroheme synthase compare
SMc03979 -3.6 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
SMc01124 -3.4 -9.3 PII uridylyl-transferase compare
SMc04346 -3.4 -4.5 ketol-acid reductoisomerase compare
SMc03981 -3.2 -4.2 phosphoglycerate kinase compare
SMc03924 -3.1 -10.1 glycogen synthase compare
SM_b20902 -3.0 -12.2 sugar uptake ABC transporter substrate-binding protein precursor compare
SMc02835 -3.0 -7.6 glucokinase compare
SMc00334 -3.0 -2.7 cytidylate kinase compare
SMc00414 -2.9 -10.1 hypothetical protein compare
SMc01147 -2.9 -5.1 coproporphyrinogen III oxidase compare
SMc03795 -2.8 -1.8 isopropylmalate isomerase small subunit compare
SMc02983 -2.7 -7.7 ornithine, DAP, or arginine decarboxylase compare
SMc02833 -2.6 -3.2 penicillin-insensitive murein endopeptidase compare
SMc02058 -2.5 -4.9 YAJC protein compare
SMc01440 -2.4 -4.9 hydrolase serine protease transmembrane protein compare
SMc02753 -2.4 -2.1 PTS system transporter subunit IIA compare
SMc03069 -2.4 -2.6 6-phosphogluconolactonase compare
SMc01430 -2.4 -6.7 acetolactate synthase 3 regulatory subunit compare
SMc01578 -2.3 -8.7 aspartate aminotransferase compare
SMc00982 -2.2 -8.0 dioxygenase compare
SMc01441 -2.2 -6.7 membrane bound protease compare
SM_b20903 -2.1 -7.2 sugar uptake ABC transporter permease compare
SMc04330 -2.1 -2.9 trimethylamine methyltransferase compare
SMc00709 -2.0 -4.8 hypothetical protein compare
SMc02640 -2.0 -5.2 UDP-glucuronic acid epimerase compare
SMc00295 -2.0 -1.0 hypothetical protein compare
SM_b20904 -2.0 -2.3 sugar uptake ABC transporter ATP-binding protein compare
SMc02641 -1.9 -3.4 UDP-glucose 6-dehydrogenase compare
SMc00302 -1.9 -3.8 hypothetical protein compare
SMc01028 -1.8 -12.5 phosphopyruvate hydratase compare
SMc01800 -1.7 -1.8 cytochrome C oxidase assembly transmembrane protein compare
SMc03153 -1.7 -3.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc04296 -1.7 -1.5 cell division protein FtsZ compare
SMc01568 -1.7 -2.0 hypothetical protein compare
SMc02227 -1.7 -6.1 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc01183 -1.6 -1.9 LexA repressor compare
SMc01842 -1.6 -1.6 methyltransferase transcription regulator protein compare
SMc02140 -1.6 -1.5 phosphate regulon transcriptional regulatory protein compare
SMc00838 -1.6 -6.5 hypothetical protein compare
SMc01438 -1.6 -5.5 protease precursor signal peptide protein compare
SMc01852 -1.6 -8.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc02909 -1.5 -2.4 transglycosylase transmembrane protein compare
SM_b20746 -1.5 -1.3 hypothetical protein compare
SMc02659 -1.5 -4.2 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc02362 -1.5 -3.1 cytochrome c-type biogenesis protein CcmE compare
SMc02838 -1.5 -6.1 phosphoglyceromutase compare
SMc00450 -1.5 -2.7 protoheme IX farnesyltransferase compare
SMc00619 -1.4 -1.4 hypothetical protein compare
SMa1924 -1.4 -1.1 hypothetical protein compare
SM_b20823 -1.4 -6.3 cell surface saccharide synthesis protein compare
SMc01187 -1.3 -2.6 rare lipoprotein A compare
SMc00689 -1.3 -3.7 lipoprotein compare
SMc02683 -1.3 -2.1 hypothetical protein compare
SMc04243 -1.3 -5.9 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc02856 -1.3 -7.8 penicillin-binding protein compare
SMc02451 -1.3 -2.0 hypothetical protein compare
SMc02470 -1.3 -3.4 transcriptional regulator compare
SMc03242 -1.3 -3.0 GTP-binding protein compare
SM_b20293 -1.3 -1.5 hypothetical protein compare
SMc02115 -1.2 -0.9 hypothetical protein compare
SMc01208 -1.2 -3.3 peptidyl-prolyl cis-trans isomerase B protein compare
SMc03967 -1.2 -1.0 Holliday junction resolvase compare
SMc00804 -1.2 -1.9 hypothetical protein compare
SMc02145 -1.2 -1.1 signal peptide protein compare
SMc02543 -1.2 -5.3 hypothetical protein compare
SMc02724 -1.2 -1.9 hypothetical protein compare
SMc02228 -1.2 -5.5 acetyl-CoA acetyltransferase compare
SMc00073 -1.2 -1.8 hypothetical protein compare
SMc00352 -1.2 -1.5 acetyltransferase compare
SMc02985 -1.2 -5.6 hypothetical protein compare
SMc01342 -1.1 -3.6 hypothetical protein compare
SMc04357 -1.1 -2.0 hypothetical protein compare
SMc00981 -1.1 -5.9 ferredoxin protein compare
SMc02521 -1.1 -2.6 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SMc02858 -1.1 -0.7 chaperone protein DnaJ compare
SMa0955 -1.1 -1.7 GntR family transcriptional regulator compare
SMc00914 -1.1 -2.2 oxidoreductase compare
SMc04348 -1.0 -1.2 transcriptional regulator compare
SMc04213 -1.0 -1.5 diacylglycerol kinase compare
SMc02384 -1.0 -4.3 glycosyltransferase transmembrane protein compare
SMc00492 -1.0 -0.9 hypothetical protein compare
SMc02147 -1.0 -4.9 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc02485 -1.0 -1.5 signal peptide protein compare
SMc04453 -1.0 -1.1 hypothetical protein compare
SM_b20773 -1.0 -3.4 GntR family transcriptional regulator compare
SM_b20075 -1.0 -1.7 hypothetical protein compare
SM_b20392 -1.0 -3.5 transcriptional regulator NanR compare
SMc01709 -1.0 -1.8 signal peptide protein compare
SMa0326 -1.0 -2.0 short chain alcohol dehydrogenase-related dehydrogenase compare
SMc01579 -1.0 -1.1 hypothetical protein compare
SMc00088 -1.0 -1.6 hypothetical protein compare
SM_b20474 -0.9 -1.9 hypothetical protein compare
SMc02229 -0.9 -5.6 acyl-CoA dehydrogenase compare
SMc02149 -0.9 -1.3 hypothetical protein compare
SMa0789 -0.9 -1.8 GntR family transcriptional regulator compare
SMc03993 -0.9 -3.2 hypothetical protein compare
SMc00579 -0.9 -3.4 dimethyladenosine transferase compare
SM_b21131 -0.9 -4.7 sulfate ABC transporter permease compare
SMc00941 -0.9 -1.1 hypothetical protein compare
SMc00006 -0.9 -2.1 hypothetical protein compare
SMc01522 -0.9 -1.6 hypothetical protein compare
SMc00856 -0.9 -1.0 hypothetical protein compare
SM_b21524 -0.9 -1.6 septum formation inhibitor compare
SM_b21133 -0.9 -4.8 sulfate ABC transporter substrate-binding protein compare
SMc01577 -0.9 -1.6 hypothetical protein compare
SMa1323 -0.9 -2.1 Transcription regulator compare
SMc02861 -0.9 -1.0 phosphate transporter compare
SMc03941 -0.9 -1.4 hypothetical protein compare
SMc00296 -0.9 -4.5 POLY3-hydroxybutyrate polymerase compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in carbon source experiments

For carbon source D-Glucose across organisms