Experiment set1IT001 for Burkholderia phytofirmans PsJN

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -7.9 -5.4 phosphoglycerate kinase compare
BPHYT_RS33835 -7.8 -5.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS02610 -7.7 -5.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17680 -7.7 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17400 -7.4 -7.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS17670 -7.1 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17675 -7.0 -2.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS04955 -6.9 -2.8 methionyl-tRNA synthetase compare
BPHYT_RS17690 -6.6 -11.1 imidazole glycerol phosphate synthase compare
BPHYT_RS16835 -6.6 -6.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33865 -6.6 -7.8 tryptophan synthase alpha chain compare
BPHYT_RS06555 -6.6 -9.0 ketol-acid reductoisomerase compare
BPHYT_RS18320 -6.5 -9.9 orotate phosphoribosyltransferase compare
BPHYT_RS06900 -6.4 -4.4 aspartate aminotransferase compare
BPHYT_RS16245 -6.2 -7.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS03150 -6.2 -14.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33880 -6.1 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17855 -5.9 -16.3 glutamate synthase compare
BPHYT_RS06545 -5.8 -10.5 acetolactate synthase compare
BPHYT_RS17685 -5.8 -10.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17890 -5.8 -4.0 shikimate kinase compare
BPHYT_RS33900 -5.8 -9.8 3-isopropylmalate dehydrogenase compare
BPHYT_RS12985 -5.7 -3.9 amino acid acetyltransferase compare
BPHYT_RS14845 -5.7 -3.9 cysteine synthase compare
BPHYT_RS15915 -5.6 -11.3 ornithine carbamoyltransferase compare
BPHYT_RS09515 -5.5 -5.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14915 -5.5 -8.1 phosphoserine aminotransferase compare
BPHYT_RS33840 -5.5 -9.0 amidophosphoribosyltransferase compare
BPHYT_RS09500 -5.5 -8.4 glucose-6-phosphate isomerase compare
BPHYT_RS16905 -5.4 -6.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS02590 -5.4 -10.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17395 -5.4 -3.0 anthranilate synthase subunit II compare
BPHYT_RS14190 -5.4 -10.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS15920 -5.3 -11.9 argininosuccinate synthase compare
BPHYT_RS33915 -5.3 -7.6 isopropylmalate isomerase compare
BPHYT_RS14910 -5.3 -10.0 chorismate mutase compare
BPHYT_RS14195 -5.2 -3.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS33645 -5.1 -7.0 homoserine kinase compare
BPHYT_RS16735 -5.1 -7.0 phosphogluconate dehydratase compare
BPHYT_RS14895 -5.1 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08850 -5.0 -3.5 transcriptional regulator compare
BPHYT_RS23840 -5.0 -5.9 methyltransferase compare
BPHYT_RS01595 -5.0 -8.4 homoserine O-acetyltransferase compare
BPHYT_RS33875 -5.0 -8.9 tryptophan synthase subunit alpha compare
BPHYT_RS17885 -5.0 -7.6 3-dehydroquinate synthase compare
BPHYT_RS12530 -5.0 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17390 -4.9 -18.1 anthranilate synthase subunit I compare
BPHYT_RS17405 -4.9 -2.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS05225 -4.9 -7.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS08955 -4.8 -5.7 homoserine dehydrogenase compare
BPHYT_RS08960 -4.6 -3.2 threonine synthase compare
BPHYT_RS13705 -4.6 -5.4 chorismate synthase compare
BPHYT_RS05010 -4.6 -6.9 RpiR family transcriptional regulator compare
BPHYT_RS16255 -4.5 -4.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06405 -4.4 -5.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS03640 -4.3 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17715 -4.2 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS16675 -4.2 -2.9 dihydroorotase compare
BPHYT_RS10100 -4.2 -6.2 dihydroxy-acid dehydratase compare
BPHYT_RS12845 -4.1 -16.4 ATPase compare
BPHYT_RS06045 -3.9 -9.1 transaldolase compare
BPHYT_RS03725 -3.8 -2.5 serine hydroxymethyltransferase compare
BPHYT_RS17700 -3.7 -7.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS08565 -3.5 -1.8 dihydroorotate dehydrogenase compare
BPHYT_RS06610 -3.4 -3.2 triosephosphate isomerase compare
BPHYT_RS33920 -3.4 -10.3 type II citrate synthase compare
BPHYT_RS16840 -3.2 -3.8 transketolase compare
BPHYT_RS05960 -3.0 -7.6 endoribonuclease L-PSP compare
BPHYT_RS01590 -2.8 -6.6 methionine biosynthesis protein MetW compare
BPHYT_RS12840 -2.8 -3.8 pyruvate dehydrogenase compare
BPHYT_RS04720 -2.7 -8.7 transcriptional regulator compare
BPHYT_RS05030 -2.6 -4.4 sugar ABC transporter permease compare
BPHYT_RS04725 -2.6 -9.4 sulfite reductase compare
BPHYT_RS14865 -2.5 -4.5 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03535 -2.5 -7.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS13220 -2.4 -5.6 phosphomethylpyrimidine synthase compare
BPHYT_RS33905 -2.4 -1.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS36385 -2.4 -1.8 TetR family transcriptional regulator compare
BPHYT_RS05025 -2.3 -5.8 sugar ABC transporter substrate-binding protein compare
BPHYT_RS05020 -2.3 -8.3 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS04965 -2.3 -8.1 ATP-binding protein compare
BPHYT_RS06685 -2.2 -2.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS15075 -2.2 -3.5 dihydrokaempferol 4-reductase compare
BPHYT_RS17380 -2.2 -8.6 ribulose-phosphate 3-epimerase compare
BPHYT_RS02905 -2.1 -16.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS18760 -2.1 -3.9 flagellar biosynthesis protein FliT compare
BPHYT_RS18340 -2.1 -2.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS02570 -2.1 -7.6 phosphocarrier protein HPr compare
BPHYT_RS17520 -2.0 -6.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS09145 -2.0 -6.3 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS15670 -2.0 -6.8 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS03625 -2.0 -9.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS03495 -2.0 -4.4 hypothetical protein compare
BPHYT_RS04740 -1.8 -5.1 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS08950 -1.8 -5.0 aminotransferase compare
BPHYT_RS02865 -1.8 -3.0 hypothetical protein compare
BPHYT_RS23230 -1.8 -1.6 histidine kinase compare
BPHYT_RS16975 -1.7 -4.8 shikimate 5-dehydrogenase compare
BPHYT_RS05040 -1.7 -6.1 sugar ABC transporter ATPase compare
BPHYT_RS12465 -1.7 -3.5 inositol monophosphatase compare
BPHYT_RS04820 -1.6 -5.3 LysR family transcriptional regulator compare
BPHYT_RS04730 -1.6 -3.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS32260 -1.6 -1.9 hypothetical protein compare
BPHYT_RS23455 -1.6 -1.5 phosphorylase compare
BPHYT_RS13605 -1.5 -1.2 tRNA-Pro compare
BPHYT_RS14900 -1.5 -2.7 prephenate dehydrogenase compare
BPHYT_RS12940 -1.5 -5.3 signal transduction histidine kinase compare
BPHYT_RS14855 -1.5 -2.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS18705 -1.5 -1.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS03645 -1.4 -2.0 tRNA dimethylallyltransferase compare
BPHYT_RS12150 -1.4 -9.8 PII uridylyl-transferase compare
BPHYT_RS04745 -1.4 -4.8 sulfate adenylyltransferase compare
BPHYT_RS01485 -1.4 -1.3 histidine kinase compare
BPHYT_RS20840 -1.4 -2.6 beta-lactamase compare
BPHYT_RS15615 -1.4 -3.5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS26925 -1.4 -2.3 NIPSNAP family containing protein compare
BPHYT_RS05035 -1.4 -5.1 sugar ABC transporter permease compare
BPHYT_RS33870 -1.3 -3.6 DNA methylase N-4 compare
BPHYT_RS17035 -1.3 -2.9 sugar kinase compare
BPHYT_RS09825 -1.3 -2.1 Fe-S protein compare
BPHYT_RS12935 -1.3 -5.7 chemotaxis protein CheY compare
BPHYT_RS09155 -1.3 -5.5 3-ketoacyl-ACP reductase compare
BPHYT_RS30915 -1.2 -2.2 hypothetical protein compare
BPHYT_RS04290 -1.2 -1.9 glycosyl transferase family 2 compare
BPHYT_RS08125 -1.2 -7.8 ATPase compare
BPHYT_RS22470 -1.2 -1.6 hydrolase compare
BPHYT_RS33385 -1.2 -1.7 major facilitator superfamily protein compare
BPHYT_RS07540 -1.2 -1.2 hypothetical protein compare
BPHYT_RS14920 -1.2 -1.0 hypothetical protein compare
BPHYT_RS09980 -1.2 -1.7 TetR family transcriptional regulator compare
BPHYT_RS03570 -1.2 -6.7 heat-inducible transcription repressor HrcA compare
BPHYT_RS08665 -1.2 -1.2 hypothetical protein compare
BPHYT_RS25335 -1.1 -1.1 hypothetical protein compare
BPHYT_RS16340 -1.1 -5.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS14400 -1.1 -2.1 anti-sigma factor compare
BPHYT_RS22910 -1.1 -1.3 hypothetical protein compare
BPHYT_RS26300 -1.1 -1.6 ATP-dependent DNA ligase compare
BPHYT_RS30490 -1.1 -0.9 2-haloalkanoic acid dehalogenase compare
BPHYT_RS29255 -1.1 -3.3 aspartate carbamoyltransferase compare
BPHYT_RS16345 -1.1 -3.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS25935 -1.1 -3.2 type III secretion protein compare
BPHYT_RS24315 -1.1 -2.4 phosphoribosyltransferase compare
BPHYT_RS18765 -1.1 -5.0 flagellar biosynthesis protein FliS compare
BPHYT_RS33850 -1.1 -1.7 sporulation protein compare
BPHYT_RS18965 -1.0 -1.7 chemotaxis protein CheY compare
BPHYT_RS21455 -1.0 -2.9 type 11 methyltransferase compare
BPHYT_RS06075 -1.0 -4.3 hypothetical protein compare
BPHYT_RS10465 -1.0 -2.7 hypothetical protein compare
BPHYT_RS34815 -1.0 -1.7 ABC transporter compare
BPHYT_RS35245 -1.0 -1.4 hypothetical protein compare
BPHYT_RS23460 -1.0 -1.0 AraC family transcriptional regulator compare
BPHYT_RS08245 -1.0 -5.6 anti-sigma factor compare
BPHYT_RS26930 -1.0 -5.3 mechanosensitive ion channel protein compare
BPHYT_RS15415 -1.0 -6.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS30990 -0.9 -1.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS34430 -0.9 -0.9 2-keto-4-pentenoate hydratase compare
BPHYT_RS33845 -0.9 -2.8 bacteriocin production protein compare
BPHYT_RS10475 -0.9 -1.2 mammalian cell entry protein compare
BPHYT_RS26880 -0.9 -2.1 ketosteroid isomerase compare
BPHYT_RS17640 -0.9 -2.5 2-alkenal reductase compare
BPHYT_RS35235 -0.9 -2.4 amino acid transporter compare
BPHYT_RS20905 -0.9 -1.7 hypothetical protein compare
BPHYT_RS00770 -0.9 -1.0 conjugal transfer protein TraC compare
BPHYT_RS16090 -0.9 -1.6 hypothetical protein compare
BPHYT_RS13645 -0.9 -7.4 threonine--tRNA ligase compare
BPHYT_RS06410 -0.9 -1.8 transcriptional regulator compare
BPHYT_RS21940 -0.9 -2.5 hemolysin D compare
BPHYT_RS29605 -0.9 -2.0 hypothetical protein compare
BPHYT_RS30750 -0.9 -1.1 GntR family transcriptional regulator compare
BPHYT_RS12725 -0.9 -5.9 regulator compare
BPHYT_RS02690 -0.9 -5.0 protoheme IX farnesyltransferase compare
BPHYT_RS08060 -0.9 -4.4 ribosome maturation factor RimP compare
BPHYT_RS17530 -0.9 -3.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03025 -0.9 -1.8 methyl-accepting chemotaxis protein compare
BPHYT_RS23650 -0.9 -0.7 hypothetical protein compare
BPHYT_RS20520 -0.8 -1.0 transcriptional regulator compare
BPHYT_RS11705 -0.8 -1.2 hypothetical protein compare
BPHYT_RS17095 -0.8 -1.8 proline--tRNA ligase compare
BPHYT_RS33375 -0.8 -1.7 membrane protein compare
BPHYT_RS25180 -0.8 -1.4 serine hydroxymethyltransferase compare
BPHYT_RS09905 -0.8 -1.3 hypothetical protein compare
BPHYT_RS32475 -0.8 -1.3 dihydroxyacetone kinase compare
BPHYT_RS06990 -0.8 -1.3 membrane protein compare
BPHYT_RS02640 -0.8 -6.0 cytochrome C oxidase compare
BPHYT_RS22930 -0.8 -1.4 type II secretion system protein compare
BPHYT_RS24270 -0.8 -2.0 C4-dicarboxylate ABC transporter substrate-binding protein compare
BPHYT_RS12990 -0.8 -2.1 iron transporter compare
BPHYT_RS15865 -0.8 -1.9 exodeoxyribonuclease VII large subunit compare
BPHYT_RS02285 -0.8 -3.8 cell division protein compare
BPHYT_RS28575 -0.8 -0.9 transcriptional regulator compare
BPHYT_RS20665 -0.8 -0.8 LysR family transcriptional regulator compare
BPHYT_RS20220 -0.8 -1.3 antibiotic synthesis protein MbtH compare
BPHYT_RS06375 -0.8 -3.3 ribonuclease compare
BPHYT_RS11125 -0.8 -1.2 alkylhydroperoxidase compare
BPHYT_RS30395 -0.8 -1.7 small mechanosensitive ion channel protein MscS compare
BPHYT_RS14500 -0.8 -1.4 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS35615 -0.8 -1.9 hypothetical protein compare
BPHYT_RS24925 -0.8 -1.1 cytochrome O ubiquinol oxidase compare
BPHYT_RS28690 -0.8 -1.6 diguanylate phosphodiesterase compare
BPHYT_RS02685 -0.8 -4.6 cytochrome C oxidase subunit I compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in carbon source experiments

For carbon source D-Glucose across organisms