Experiment set1H6 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_0296 +2.8 6.0 heat shock protein Hsp20 (RefSeq) compare
Shew_1058 +2.6 15.7 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_0755 +2.5 14.7 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_2049 +2.4 12.2 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_2572 +2.4 9.4 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_1601 +2.3 5.9 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1013 +2.1 20.4 aspartate carbamoyltransferase (RefSeq) compare
Shew_1298 guaA +2.0 11.3 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_2642 +1.9 5.4 flavodoxin (RefSeq) compare
Shew_1202 +1.8 7.1 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1563 +1.8 10.5 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_3487 pyrE +1.8 9.7 orotate phosphoribosyltransferase (RefSeq) compare
Shew_0383 +1.8 6.7 malate dehydrogenase (RefSeq) compare
Shew_0728 +1.8 14.4 dihydroorotase (RefSeq) compare
Shew_2000 +1.8 2.5 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_1341 +1.7 7.6 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_3377 +1.7 1.6 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_2906 +1.7 2.6 hypothetical protein (RefSeq) compare
Shew_2668 +1.7 8.5 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_1224 +1.7 14.3 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1602 +1.7 6.2 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_2222 +1.6 1.1 hypothetical protein (RefSeq) compare
Shew_2666 +1.6 9.0 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_0661 +1.5 1.8 hypothetical protein (RefSeq) compare
Shew_2838 carB +1.5 9.7 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_3682 +1.5 11.6 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_3063 +1.5 2.1 glycine cleavage system protein H (RefSeq) compare
Shew_2665 +1.5 11.1 beta-ketoacyl synthase (RefSeq) compare
Shew_3681 +1.5 11.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0421 +1.5 1.4 phage shock protein C, PspC (RefSeq) compare
Shew_3708 +1.4 6.3 TetR family transcriptional regulator (RefSeq) compare
Shew_2839 +1.4 11.3 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_1819 +1.4 4.2 GntR family transcriptional regulator (RefSeq) compare
Shew_3660 +1.4 12.2 glutathione reductase (RefSeq) compare
Shew_2174 +1.4 2.8 fatty acid metabolism regulator (RefSeq) compare
Shew_2667 +1.4 7.1 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_3410 +1.4 8.4 permease (RefSeq) compare
Shew_3710 tdh +1.3 4.9 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_2402 +1.3 1.1 ABC transporter-related protein (RefSeq) compare
Shew_2558 +1.3 3.3 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_2664 +1.3 4.0 transcriptional regulator, putative (RefSeq) compare
Shew_3122 +1.3 1.0 PepSY-associated TM helix domain-containing protein (RefSeq) compare
Shew_1810 +1.2 6.4 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_3522 +1.2 1.7 hypothetical protein (RefSeq) compare
Shew_3598 +1.2 0.9 AsnC family transcriptional regulator (RefSeq) compare
Shew_2656 +1.2 5.7 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_1713 +1.2 2.3 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_3709 +1.2 7.8 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_1490 +1.2 0.8 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) compare
Shew_2409 +1.1 3.3 short chain dehydrogenase (RefSeq) compare
Shew_2785 +1.1 1.1 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_1705 +1.1 1.7 hypothetical protein (RefSeq) compare
Shew_1927 +1.1 1.7 dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_3430 +1.1 1.9 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_0121 +1.1 1.3 hypothetical protein (RefSeq) compare
Shew_0799 +1.1 2.6 MarR family transcriptional regulator (RefSeq) compare
Shew_2571 +1.1 7.6 propionyl-CoA carboxylase (RefSeq) compare
Shew_2837 +1.1 1.2 transcription elongation factor GreA (RefSeq) compare
Shew_3500 +1.1 3.1 putative endoribonuclease L-PSP (RefSeq) compare
Shew_2476 +1.1 1.4 MotA/TolQ/ExbB proton channel (RefSeq) compare
Shew_2263 +1.1 2.1 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_1092 +1.1 6.4 amino acid carrier protein (RefSeq) compare
Shew_0763 +1.1 6.7 putative PAS/PAC sensor protein (RefSeq) compare
Shew_1823 +1.1 4.0 putative AcnD-accessory protein PrpF (RefSeq) compare
Shew_1673 fabG +1.1 1.3 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_2918 +1.1 1.1 hypothetical protein (RefSeq) compare
Shew_0127 +1.0 4.0 LexA repressor (RefSeq) compare
Shew_3295 +1.0 6.7 AFG1 family ATPase (RefSeq) compare
Shew_2606 +1.0 3.5 ABC transporter-related protein (RefSeq) compare
Shew_1050 +1.0 4.2 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2573 +1.0 6.8 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_1714 +1.0 1.9 alpha/beta hydrolase fold (RefSeq) compare
Shew_1085 +1.0 1.7 response regulator receiver protein (RefSeq) compare
Shew_1812 +0.9 4.2 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_2115 +0.9 3.3 lytic transglycosylase, catalytic (RefSeq) compare
Shew_0534 +0.9 4.3 major facilitator transporter (RefSeq) compare
Shew_0757 +0.9 3.7 putative transcriptional regulator, CadC (RefSeq) compare
Shew_2803 +0.9 2.0 DNA-binding transcriptional regulator TorR (RefSeq) compare
Shew_2584 +0.9 4.7 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_2211 +0.9 1.3 phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq) compare
Shew_1393 +0.9 1.7 FlhB domain-containing protein (RefSeq) compare
Shew_3499 +0.9 3.0 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_1006 +0.9 1.3 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) compare
Shew_1494 +0.9 1.2 hypothetical protein (RefSeq) compare
Shew_2589 +0.8 1.4 hypothetical protein (RefSeq) compare
Shew_3602 +0.8 4.9 O-succinylbenzoate-CoA ligase (RefSeq) compare
Shew_2320 +0.8 5.1 RNA methyltransferase (RefSeq) compare
Shew_1865 +0.8 3.7 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_1878 +0.8 1.7 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_2010 +0.8 1.5 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_3772 +0.8 1.2 thioesterase superfamily protein (RefSeq) compare
Shew_3711 +0.8 0.7 rhodanese domain-containing protein (RefSeq) compare
Shew_3636 +0.8 2.6 transcription elongation factor GreB (RefSeq) compare
Shew_1926 +0.8 1.1 transketolase, central region (RefSeq) compare
Shew_0834 +0.8 0.6 hypothetical protein (RefSeq) compare
Shew_3601 +0.8 3.7 O-succinylbenzoate synthase (RefSeq) compare
Shew_1437 +0.8 5.1 transcriptional regulator, TyrR (RefSeq) compare
Shew_2121 +0.8 2.0 diguanylate cyclase (RefSeq) compare
Shew_1867 +0.8 3.0 hypothetical protein (RefSeq) compare
Shew_1716 +0.8 1.0 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq) compare
Shew_1014 +0.8 0.8 XRE family transcriptional regulator (RefSeq) compare
Shew_0585 +0.8 2.2 cAMP-regulatory protein (RefSeq) compare
Shew_0698 +0.8 1.8 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_0097 +0.8 2.7 two component transcriptional regulator (RefSeq) compare
Shew_2725 +0.8 1.7 ribokinase-like domain-containing protein (RefSeq) compare
Shew_0390 +0.8 0.8 MSHA biogenesis protein MshM (RefSeq) compare
Shew_3267 +0.8 3.2 sodium/hydrogen exchanger (RefSeq) compare
Shew_0827 +0.8 0.9 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_2963 +0.7 2.1 hypothetical protein (RefSeq) compare
Shew_2099 +0.7 1.5 DTW domain-containing protein (RefSeq) compare
Shew_1146 +0.7 2.7 hypothetical protein (RefSeq) compare
Shew_0594 +0.7 2.5 hypothetical protein (RefSeq) compare
Shew_1995 +0.7 1.3 PP-loop domain-containing protein (RefSeq) compare
Shew_0136 +0.7 3.0 stearoyl-CoA 9-desaturase (RefSeq) compare
Shew_1136 +0.7 1.9 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
Shew_1223 +0.7 0.5 hypothetical protein (RefSeq) compare
Shew_2147 +0.7 0.9 hypothetical protein (RefSeq) compare
Shew_2286 +0.7 1.8 SSS family solute/sodium (Na+) symporter (RefSeq) compare
Shew_1518 +0.7 1.0 hypothetical protein (RefSeq) compare
Shew_1681 +0.7 1.6 diguanylate cyclase with PAS/PAC sensor (RefSeq) compare
Shew_2646 +0.7 0.6 hypothetical protein (RefSeq) compare
Shew_2367 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_0098 +0.7 4.7 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_2907 +0.7 1.4 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_0285 +0.7 1.0 diguanylate cyclase (RefSeq) compare
Shew_3600 +0.7 2.8 alpha/beta hydrolase fold (RefSeq) compare
Shew_2223 +0.7 0.7 YceI family protein (RefSeq) compare
Shew_2389 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_2579 +0.7 2.0 thymidine kinase (RefSeq) compare
Shew_2766 +0.7 3.4 thiamine biosynthesis protein ThiI (RefSeq) compare
Shew_1078 +0.7 4.9 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_3273 +0.7 2.3 hypothetical protein (RefSeq) compare
Shew_2456 +0.7 2.1 SMC domain-containing protein (RefSeq) compare
Shew_3378 +0.7 1.2 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_3268 +0.7 1.7 hypothetical protein (RefSeq) compare
Shew_1932 cls +0.7 2.7 cardiolipin synthetase (RefSeq) compare
Shew_2008 +0.7 0.9 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1860 +0.7 2.0 alpha/beta hydrolase fold (RefSeq) compare
Shew_1831 +0.7 0.7 hypothetical protein (RefSeq) compare
Shew_1455 +0.7 0.7 dual specificity protein phosphatase (RefSeq) compare
Shew_2611 +0.6 1.4 ABC transporter-related protein (RefSeq) compare
Shew_3225 +0.6 4.1 glutathione synthetase (RefSeq) compare
Shew_0833 +0.6 0.9 hypoxanthine-guanine phosphoribosyltransferase (RefSeq) compare
Shew_1914 +0.6 1.2 aminotransferase AlaT (RefSeq) compare
Shew_0342 +0.6 3.8 hypothetical protein (RefSeq) compare
Shew_1961 +0.6 1.0 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_1606 +0.6 0.5 hypothetical protein (RefSeq) compare
Shew_2799 torD +0.6 2.0 chaperone protein TorD (RefSeq) compare
Shew_1407 +0.6 4.6 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1213 +0.6 0.9 RpoD family RNA polymerase sigma factor (RefSeq) compare
Shew_0086 +0.6 4.9 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_2763 +0.6 1.0 dienelactone hydrolase (RefSeq) compare
Shew_3799 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_2171 +0.6 1.9 peptidase T2, asparaginase 2 (RefSeq) compare
Shew_3568 +0.6 2.6 cation diffusion facilitator family transporter (RefSeq) compare
Shew_2453 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_1711 +0.6 1.2 methyl-accepting chemotaxis protein (RefSeq) compare
Shew_3144 +0.6 3.2 UDP-N-acetylmuramate (RefSeq) compare
Shew_2346 +0.6 1.2 ABC transporter-related protein (RefSeq) compare
Shew_2035 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_3265 +0.6 0.9 CutA1 divalent ion tolerance protein (RefSeq) compare
Shew_1235 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_1646 +0.6 0.6 beta-lactamase domain-containing protein (RefSeq) compare
Shew_3488 +0.6 1.6 ribonuclease PH (RefSeq) compare
Shew_1287 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_3189 +0.6 3.3 hypothetical protein (RefSeq) compare
Shew_2576 +0.6 2.6 3-oxoacid CoA-transferase, B subunit (RefSeq) compare
Shew_3520 +0.6 3.1 hypothetical protein (RefSeq) compare
Shew_1227 +0.6 0.7 glutamate--cysteine ligase (RefSeq) compare
Shew_1339 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_2615 +0.6 2.1 patatin (RefSeq) compare
Shew_1388 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_2895 +0.6 3.0 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_2416 +0.6 0.6 chorismate synthase (RefSeq) compare
Shew_1717 +0.6 0.9 globin (RefSeq) compare
Shew_0047 +0.6 1.8 molybdopterin biosynthesis protein MoeB (RefSeq) compare
Shew_1028 +0.6 2.6 hypothetical protein (RefSeq) compare
Shew_1833 +0.6 1.0 putative serine protein kinase, PrkA (RefSeq) compare
Shew_2779 +0.6 1.2 amino acid ABC transporter (RefSeq) compare
Shew_1010 +0.6 1.3 general secretion pathway protein B (RefSeq) compare
Shew_0316 +0.6 2.5 protein of unknown function DUF513, hemX (RefSeq) compare
Shew_0026 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_2403 +0.6 0.8 arylesterase (RefSeq) compare
Shew_1931 +0.6 0.7 alkylphosphonate utilization operon protein PhnA (RefSeq) compare
Shew_3540 +0.6 3.8 NapC/NirT cytochrome c domain-containing protein (RefSeq) compare
Shew_3695 +0.6 0.7 cytidyltransferase-like protein (RefSeq) compare
Shew_3599 +0.6 3.7 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq) compare
Shew_3431 aceE +0.6 3.6 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_1281 +0.5 1.1 hypothetical protein (RefSeq) compare
Shew_2809 +0.5 2.6 alpha/beta hydrolase fold (RefSeq) compare
Shew_2175 nhaB +0.5 2.4 sodium/proton antiporter (RefSeq) compare
Shew_1095 +0.5 0.8 ArsR family transcriptional regulator (RefSeq) compare
Shew_3346 +0.5 1.6 hypothetical protein (RefSeq) compare
Shew_2808 +0.5 2.2 type IV pilus assembly PilZ (RefSeq) compare
Shew_0553 +0.5 1.2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) compare
Shew_1154 +0.5 1.6 hypothetical protein (RefSeq) compare
Shew_2108 fadE +0.5 1.9 acyl-CoA dehydrogenase (RefSeq) compare
Shew_0842 +0.5 1.1 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_1994 +0.5 0.6 universal stress protein UspE (RefSeq) compare
Shew_3262 +0.5 0.4 hypothetical protein (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments