Experiment set1H40 for Dinoroseobacter shibae DFL-12

Compare to:

marine broth with Thallium(I) acetate 0.001 mg/ml

Group: stress
Media: marine_broth_2216 + Thallium(I) acetate (0.001 mg/ml)
Culturing: Dino_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Jordan on 8/22/2013
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 658 A1,A2

Specific Phenotypes

For 15 genes in this experiment

For stress Thallium(I) acetate in Dinoroseobacter shibae DFL-12

For stress Thallium(I) acetate across organisms

SEED Subsystems

Subsystem #Specific
Sulfur oxidation 5
Arsenic resistance 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
Glutathione: Redox cycle 1
Homogentisate pathway of aromatic compound degradation 1
Potassium homeostasis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
taurine degradation I 1 1 1
thiosulfate oxidation III (multienzyme complex) 5 4 4
thiosulfate oxidation IV (multienzyme complex) 3 2 2
hypotaurine degradation 3 3 1
glutathione-peroxide redox reactions 3 2 1
L-tyrosine degradation I 5 4 1
superpathway of taurine degradation 6 3 1