Experiment set1H25 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_1224 +2.4 15.0 sodium:dicarboxylate symporter (RefSeq) compare
Shew_2049 +2.3 5.0 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_1341 +2.0 4.8 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_3660 +1.8 13.9 glutathione reductase (RefSeq) compare
Shew_1601 +1.8 2.9 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2642 +1.8 4.3 flavodoxin (RefSeq) compare
Shew_1273 +1.6 1.7 hypothetical protein (RefSeq) compare
Shew_2572 +1.5 7.4 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_1602 +1.5 3.7 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_3267 +1.5 4.9 sodium/hydrogen exchanger (RefSeq) compare
Shew_2320 +1.4 6.8 RNA methyltransferase (RefSeq) compare
Shew_1058 +1.2 4.2 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_3681 +1.2 9.0 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_3682 +1.2 9.1 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1819 +1.2 3.1 GntR family transcriptional regulator (RefSeq) compare
Shew_2571 +1.2 6.4 propionyl-CoA carboxylase (RefSeq) compare
Shew_1428 +1.2 2.0 fructokinase (RefSeq) compare
Shew_3295 +1.2 8.1 AFG1 family ATPase (RefSeq) compare
Shew_0763 +1.2 5.8 putative PAS/PAC sensor protein (RefSeq) compare
Shew_0944 +1.1 1.7 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2202 +1.1 1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq) compare
Shew_1050 +1.1 5.1 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2770 +1.1 0.5 polyprenyl synthetase (RefSeq) compare
Shew_1898 +1.0 1.7 ApbE family lipoprotein (RefSeq) compare
Shew_1455 +1.0 1.2 dual specificity protein phosphatase (RefSeq) compare
Shew_2667 +1.0 7.2 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2656 +1.0 4.7 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_0799 +1.0 2.0 MarR family transcriptional regulator (RefSeq) compare
Shew_3710 tdh +1.0 7.6 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_0296 +1.0 0.7 heat shock protein Hsp20 (RefSeq) compare
Shew_3500 +1.0 2.2 putative endoribonuclease L-PSP (RefSeq) compare
Shew_0421 +1.0 1.4 phage shock protein C, PspC (RefSeq) compare
Shew_3223 +1.0 1.6 deoxyribonuclease I (RefSeq) compare
Shew_1202 +1.0 4.9 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1881 +1.0 1.4 hypothetical protein (RefSeq) compare
Shew_1810 +1.0 2.2 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_1657 sucC +0.9 1.1 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_0121 +0.9 0.7 hypothetical protein (RefSeq) compare
Shew_2469 +0.9 0.9 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_1798 +0.9 2.1 paraquat-inducible protein A (RefSeq) compare
Shew_1736 +0.9 0.9 hypothetical protein (RefSeq) compare
Shew_2665 +0.9 7.1 beta-ketoacyl synthase (RefSeq) compare
Shew_2026 +0.9 2.1 alanine dehydrogenase (RefSeq) compare
Shew_2389 +0.9 2.3 hypothetical protein (RefSeq) compare
Shew_2191 +0.9 0.7 hypothetical protein (RefSeq) compare
Shew_1456 +0.9 3.1 phospholipase D/transphosphatidylase (RefSeq) compare
Shew_0097 +0.9 3.6 two component transcriptional regulator (RefSeq) compare
Shew_3131 +0.9 4.4 poly(A) polymerase (RefSeq) compare
Shew_2668 +0.9 5.0 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_2278 +0.8 1.1 LysR family transcriptional regulator (RefSeq) compare
Shew_2459 +0.8 0.7 hypothetical protein (RefSeq) compare
Shew_3499 +0.8 1.9 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_1714 +0.8 1.8 alpha/beta hydrolase fold (RefSeq) compare
Shew_2884 +0.8 2.0 glycine cleavage system regulatory protein-like protein (RefSeq) compare
Shew_1092 +0.8 3.8 amino acid carrier protein (RefSeq) compare
Shew_0364 +0.8 1.2 MshA, mannose-sensitive haemaglutinin (RefSeq) compare
Shew_1514 upp +0.8 2.1 uracil phosphoribosyltransferase (RefSeq) compare
Shew_3537 +0.8 1.5 hypothetical protein (RefSeq) compare
Shew_3225 +0.8 3.2 glutathione synthetase (RefSeq) compare
Shew_1080 +0.8 1.4 homoserine kinase (RefSeq) compare
Shew_1223 +0.8 0.7 hypothetical protein (RefSeq) compare
Shew_2918 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_2409 +0.8 2.0 short chain dehydrogenase (RefSeq) compare
Shew_3271 +0.8 4.4 galactokinase (RefSeq) compare
Shew_0220 +0.8 3.2 phosphoglycolate phosphatase (RefSeq) compare
Shew_2198 +0.8 1.4 histidinol dehydrogenase (RefSeq) compare
Shew_2287 +0.8 2.5 galactokinase (RefSeq) compare
Shew_1461 +0.8 2.3 zinc carboxypeptidase-related protein (RefSeq) compare
Shew_2481 +0.8 3.0 porin (RefSeq) compare
Shew_3709 +0.8 5.2 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_1298 guaA +0.8 4.4 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_2666 +0.8 4.3 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_1437 +0.8 4.2 transcriptional regulator, TyrR (RefSeq) compare
Shew_2072 +0.8 1.1 endonuclease III (RefSeq) compare
Shew_2573 +0.7 5.5 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_0945 +0.7 1.9 hypothetical protein (RefSeq) compare
Shew_1287 +0.7 1.8 hypothetical protein (RefSeq) compare
Shew_3432 pdhR +0.7 1.5 transcriptional regulator PdhR (RefSeq) compare
Shew_0534 +0.7 2.5 major facilitator transporter (RefSeq) compare
Shew_0594 +0.7 2.3 hypothetical protein (RefSeq) compare
Shew_3431 aceE +0.7 4.4 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_2415 +0.7 0.9 major facilitator transporter (RefSeq) compare
Shew_0084 +0.7 1.0 hypothetical protein (RefSeq) compare
Shew_2803 +0.7 1.2 DNA-binding transcriptional regulator TorR (RefSeq) compare
Shew_3063 +0.7 1.1 glycine cleavage system protein H (RefSeq) compare
Shew_0764 +0.7 1.7 radical SAM domain-containing protein (RefSeq) compare
Shew_1820 prpB +0.7 2.2 2-methylisocitrate lyase (RefSeq) compare
Shew_1078 +0.7 4.1 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_0290 ilvM +0.7 2.0 acetolactate synthase 2 regulatory subunit (RefSeq) compare
Shew_2396 +0.7 1.0 hypothetical protein (RefSeq) compare
Shew_2664 +0.7 3.8 transcriptional regulator, putative (RefSeq) compare
Shew_0858 +0.7 1.6 oxidoreductase FAD/NAD(P)-binding subunit (RefSeq) compare
Shew_3064 gcvT +0.7 4.7 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_1782 +0.7 4.4 MarR family transcriptional regulator (RefSeq) compare
Shew_3755 +0.7 1.7 thioesterase superfamily protein (RefSeq) compare
Shew_1606 +0.7 0.6 hypothetical protein (RefSeq) compare
Shew_1970 +0.7 3.2 histidine kinase (RefSeq) compare
Shew_0206 +0.7 3.8 argininosuccinate lyase (RefSeq) compare
Shew_0459 +0.7 1.9 PAS/PAC sensor hybrid histidine kinase (RefSeq) compare
Shew_1295 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_1711 +0.7 1.1 methyl-accepting chemotaxis protein (RefSeq) compare
Shew_1891 +0.7 0.5 Fmu (Sun) domain-containing protein (RefSeq) compare
Shew_2167 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_2175 nhaB +0.6 3.0 sodium/proton antiporter (RefSeq) compare
Shew_1550 +0.6 3.7 FAD linked oxidase domain-containing protein (RefSeq) compare
Shew_2551 +0.6 1.2 homoserine O-succinyltransferase (RefSeq) compare
Shew_2584 +0.6 2.5 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_1546 +0.6 1.4 thioesterase superfamily protein (RefSeq) compare
Shew_0992 +0.6 1.5 BsuBIPstI restriction endonuclease domain-containing protein (RefSeq) compare
Shew_2890 +0.6 0.5 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1302 +0.6 2.2 cytochrome bd ubiquinol oxidase, subunit I (RefSeq) compare
Shew_0086 +0.6 4.8 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_1531 grxA +0.6 1.6 glutaredoxin 1 (RefSeq) compare
Shew_2236 +0.6 2.0 adenine phosphoribosyltransferase (RefSeq) compare
Shew_3273 +0.6 2.7 hypothetical protein (RefSeq) compare
Shew_2367 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_3711 +0.6 0.6 rhodanese domain-containing protein (RefSeq) compare
Shew_2456 +0.6 2.5 SMC domain-containing protein (RefSeq) compare
Shew_2252 +0.6 0.5 anthranilate synthase component II (RefSeq) compare
Shew_1264 +0.6 1.0 UvrD/REP helicase (RefSeq) compare
Shew_1865 +0.6 2.5 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_0269 +0.6 2.1 hypothetical protein (RefSeq) compare
Shew_2073 +0.6 0.6 lactoylglutathione lyase (RefSeq) compare
Shew_0538 +0.6 0.8 phage shock protein C, PspC (RefSeq) compare
Shew_0782 +0.6 1.8 DNA-binding transcriptional regulator AsnC (RefSeq) compare
Shew_0733 +0.6 2.2 hypothetical protein (RefSeq) compare
Shew_1831 +0.6 0.7 hypothetical protein (RefSeq) compare
Shew_0455 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_1867 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_1479 +0.6 1.0 deoxyribodipyrimidine photo-lyase (RefSeq) compare
Shew_2137 +0.6 1.6 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_1731 +0.6 0.5 histidine triad (HIT) protein (RefSeq) compare
Shew_1146 +0.6 2.4 hypothetical protein (RefSeq) compare
Shew_0054 +0.6 3.4 hypothetical protein (RefSeq) compare
Shew_1439 +0.6 2.9 maleylacetoacetate isomerase (RefSeq) compare
Shew_0503 +0.6 1.7 thioredoxin domain-containing protein (RefSeq) compare
Shew_0056 +0.6 4.6 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_1483 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_0463 +0.6 1.8 hypothetical protein (RefSeq) compare
Shew_1391 +0.6 0.7 CheW protein (RefSeq) compare
Shew_0495 +0.6 0.7 hypothetical protein (RefSeq) compare
Shew_0484 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_1454 +0.6 2.6 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_3520 +0.6 3.3 hypothetical protein (RefSeq) compare
Shew_2300 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_0130 +0.6 1.8 3'(2'),5'-bisphosphate nucleotidase (RefSeq) compare
Shew_2455 +0.6 2.7 peptidase M23B (RefSeq) compare
Shew_2806 +0.6 1.1 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_1122 +0.6 2.9 hypothetical protein (RefSeq) compare
Shew_3265 +0.6 0.9 CutA1 divalent ion tolerance protein (RefSeq) compare
Shew_2074 +0.5 3.3 TonB-dependent receptor (RefSeq) compare
Shew_2643 +0.5 0.7 pseudouridylate synthase (RefSeq) compare
Shew_2549 +0.5 1.0 NAD(P)H dehydrogenase (quinone) (RefSeq) compare
Shew_0797 +0.5 2.3 hypothetical protein (RefSeq) compare
Shew_2410 +0.5 0.3 beta-ketoacyl synthase (RefSeq) compare
Shew_1147 +0.5 1.7 hypothetical protein (RefSeq) compare
Shew_0098 +0.5 2.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_2402 +0.5 0.5 ABC transporter-related protein (RefSeq) compare
Shew_1564 +0.5 1.2 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Shew_2154 +0.5 1.5 homogentisate 1,2-dioxygenase (RefSeq) compare
Shew_3687 +0.5 3.3 molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq) compare
Shew_1960 +0.5 0.5 hypothetical protein (RefSeq) compare
Shew_1131 +0.5 1.6 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) compare
Shew_0516 +0.5 1.1 cytochrome c family protein (RefSeq) compare
Shew_2687 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_1488 +0.5 1.1 FAD linked oxidase domain-containing protein (RefSeq) compare
Shew_1114 +0.5 1.0 SapC family protein (RefSeq) compare
Shew_2197 hisG +0.5 1.6 ATP phosphoribosyltransferase (RefSeq) compare
Shew_2561 +0.5 2.2 6-phosphogluconate dehydrogenase (RefSeq) compare
Shew_0058 +0.5 3.5 twin-arginine translocation pathway signal (RefSeq) compare
Shew_0196 +0.5 0.7 redoxin domain-containing protein (RefSeq) compare
Shew_1875 +0.5 2.9 peptidase M28 (RefSeq) compare
Shew_1762 +0.5 1.2 hydrogenase expression/formation protein (RefSeq) compare
Shew_0047 +0.5 2.4 molybdopterin biosynthesis protein MoeB (RefSeq) compare
Shew_2617 +0.5 1.6 potassium efflux system protein (RefSeq) compare
Shew_2115 +0.5 2.3 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1563 +0.5 1.7 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_2090 +0.5 0.8 methyl-accepting chemotaxis protein (RefSeq) compare
Shew_2052 +0.5 0.6 TetR family transcriptional regulator (RefSeq) compare
Shew_0101 +0.5 1.8 endoribonuclease L-PSP (RefSeq) compare
Shew_2570 +0.5 4.3 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_3716 +0.5 2.8 cytochrome c, class I (RefSeq) compare
Shew_2010 +0.5 0.7 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_0684 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_3628 +0.5 1.7 MgtC/SapB transporter (RefSeq) compare
Shew_0242 +0.5 2.1 molydopterin dinucleotide-binding region (RefSeq) compare
Shew_3247 +0.5 0.5 hypothetical protein (RefSeq) compare
Shew_1300 +0.5 1.6 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1932 cls +0.5 1.8 cardiolipin synthetase (RefSeq) compare
Shew_0529 +0.5 0.9 Sel1 domain-containing protein (RefSeq) compare
Shew_3443 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_0585 +0.5 1.4 cAMP-regulatory protein (RefSeq) compare
Shew_0438 +0.5 0.4 GumN family protein (RefSeq) compare
Shew_0756 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_2558 +0.5 1.3 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_0586 +0.5 1.8 TPR repeat-containing protein (RefSeq) compare
Shew_0446 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_1771 +0.5 1.7 nitrate reductase cytochrome c-type subunit (NapB) (RefSeq) compare
Shew_1458 +0.5 3.0 serine/threonine transporter SstT (RefSeq) compare
Shew_2114 +0.5 2.0 hydroxyacylglutathione hydrolase (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments