Experiment set1H24 for Dechlorosoma suillum PS

Compare to:

defined media with 30 mM sodium lactate

200 most important genes:

  gene name fitness t score description  
Dsui_1446 -4.0 -3.9 succinyl-CoA synthetase, alpha subunit compare
Dsui_1096 -3.8 -9.7 glutamate synthase family protein compare
Dsui_1578 -3.7 -4.4 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_1947 -3.7 -2.5 nucleotide sugar dehydrogenase compare
Dsui_1445 -3.6 -4.2 succinyl-CoA synthetase, beta subunit compare
Dsui_1581 -3.3 -3.0 response regulator compare
Dsui_2368 -3.0 -3.1 serine O-acetyltransferase compare
Dsui_1097 -3.0 -3.5 NADH/NADPH-dependent glutamate synthase small subunit compare
Dsui_1094 -2.6 -2.7 shikimate kinase compare
Dsui_3130 -2.6 -1.9 tRNA-Leu compare
Dsui_0391 -2.5 -2.4 Protein of unknown function (DUF3426) compare
Dsui_2981 -2.3 -1.5 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_0992 -2.2 -2.6 putative membrane protein compare
Dsui_1970 -2.2 -4.2 metalloendopeptidase-like membrane protein compare
Dsui_2433 -2.2 -7.3 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_1534 -2.1 -1.6 ribosomal protein L33 compare
Dsui_0175 -2.0 -2.9 hypothetical protein compare
Dsui_2752 -1.9 -1.8 ABC-type multidrug transport system, ATPase and permease component compare
Dsui_1059 -1.9 -2.2 thiamine monophosphate synthase compare
Dsui_3375 -1.9 -1.4 hypothetical protein compare
Dsui_1891 -1.9 -3.1 enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase compare
Dsui_3457 -1.9 -1.7 K+ transporter compare
Dsui_1275 -1.8 -3.5 protein-export chaperone SecB compare
Dsui_2305 -1.8 -4.0 electron transfer flavoprotein, beta subunit compare
Dsui_3081 -1.7 -1.6 chaperone protein DnaK compare
Dsui_2673 -1.7 -2.9 hypothetical protein compare
Dsui_3080 -1.6 -1.5 molecular chaperone GrpE (heat shock protein) compare
Dsui_1894 -1.6 -3.4 E3 Ubiquitin ligase compare
Dsui_1576 -1.6 -1.5 dihydrolipoamide dehydrogenase compare
Dsui_2042 -1.6 -3.2 cystathionine beta-lyase/cystathionine gamma-synthase compare
Dsui_3054 -1.5 -1.9 phosphate ABC transporter, permease protein PstA compare
Dsui_0500 -1.5 -3.1 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_0745 -1.5 -1.9 membrane-associated lipoprotein involved in thiamine biosynthesis compare
Dsui_0007 -1.4 -1.0 cold shock protein compare
Dsui_3484 -1.4 -1.5 putative permease compare
Dsui_3072 -1.4 -4.3 DNA repair protein RecN compare
Dsui_0725 -1.3 -2.5 putative hydrolase of the alpha/beta superfamily compare
Dsui_3295 -1.3 -3.3 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Dsui_0099 -1.3 -2.3 putative periplasmic or secreted lipoprotein compare
Dsui_0465 -1.3 -1.5 ADP-heptose:LPS heptosyltransferase compare
Dsui_2586 -1.3 -3.1 type IV secretory pathway, VirB9 component compare
Dsui_0173 -1.3 -2.3 site-specific DNA methylase compare
Dsui_3220 -1.3 -1.7 PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase compare
Dsui_1525 -1.3 -5.9 sulfate/thiosulfate-binding protein compare
Dsui_2615 -1.3 -4.4 hypothetical protein compare
Dsui_2454 -1.3 -3.4 Positive regulator of sigma E activity compare
Dsui_2034 -1.3 -2.3 DNA gyrase inhibitor compare
Dsui_0706 -1.2 -1.4 hypothetical protein compare
Dsui_0477 -1.2 -2.7 tol-pal system protein YbgF compare
Dsui_0850 -1.2 -3.0 hypothetical protein compare
Dsui_0401 -1.2 -1.5 nucleoside-diphosphate-sugar epimerase compare
Dsui_0015 -1.2 -1.4 putative signal-transduction protein containing cAMP-binding and CBS domains compare
Dsui_1427 -1.2 -2.7 dinuclear metal center protein, YbgI/SA1388 family compare
Dsui_0901 -1.2 -2.0 hypothetical protein compare
Dsui_1577 -1.2 -1.2 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_2306 -1.2 -2.3 transcriptional regulator compare
Dsui_0259 -1.2 -3.9 sulfate ABC transporter, permease protein CysW compare
Dsui_0398 -1.2 -4.1 UDP-glucose-4-epimerase compare
Dsui_2402 -1.1 -1.0 hypothetical protein compare
Dsui_2248 -1.1 -1.7 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_1221 -1.1 -3.8 hypothetical protein compare
Dsui_0432 -1.1 -1.3 hypothetical protein compare
Dsui_0747 -1.1 -2.4 glutamate--cysteine ligase compare
Dsui_1251 -1.1 -1.2 acylphosphatase compare
Dsui_2617 -1.1 -1.4 DNA recombination-dependent growth factor C compare
Dsui_2610 -1.1 -2.0 single-stranded DNA-binding protein compare
Dsui_0434 -1.1 -2.4 ribonuclease, Rne/Rng family compare
Dsui_0399 -1.1 -3.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
Dsui_1669 -1.0 -1.7 trypsin-like serine protease with C-terminal PDZ domain compare
Dsui_2487 -1.0 -3.5 hypothetical protein compare
Dsui_2563 -1.0 -2.3 hypothetical protein compare
Dsui_3414 -1.0 -4.7 FAD/FMN-dependent dehydrogenase compare
Dsui_0549 -1.0 -2.9 queuosine biosynthesis protein QueC compare
Dsui_1579 -1.0 -3.3 ABC-type branched-chain amino acid transport system, periplasmic component compare
Dsui_0025 -1.0 -2.0 hypothetical protein compare
Dsui_3495 -1.0 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Dsui_2053 -1.0 -2.5 HNH endonuclease compare
Dsui_2567 -1.0 -7.4 hypothetical protein compare
Dsui_2559 -1.0 -2.3 Protein of unknown function (DUF2523) compare
Dsui_2609 -0.9 -2.0 hypothetical protein compare
Dsui_3531 -0.9 -1.0 Protein of unknown function (DUF3619) compare
Dsui_2443 -0.9 -1.6 putative metal-binding protein, possibly nucleic-acid binding protein compare
Dsui_2599 -0.9 -1.8 hypothetical protein compare
Dsui_0258 -0.9 -2.6 sulfate ABC transporter, ATP-binding protein compare
Dsui_2783 -0.9 -2.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_3257 -0.9 -4.1 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities compare
Dsui_0515 -0.9 -1.5 hypothetical protein compare
Dsui_1893 -0.9 -1.2 putative membrane protein compare
Dsui_1022 -0.9 -3.2 cell division protein compare
Dsui_0028 -0.9 -2.2 putative effector of murein hydrolase compare
Dsui_2873 -0.9 -1.1 Peroxiredoxin compare
Dsui_1206 -0.9 -2.5 hypothetical protein compare
Dsui_2329 -0.9 -1.7 putative dehydrogenase compare
Dsui_1227 -0.9 -2.3 DNA/RNA helicase, superfamily I compare
Dsui_2094 -0.8 -1.9 putative autotransporter protein compare
Dsui_2032 -0.8 -1.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_1955 -0.8 -2.7 3'-5' exonuclease compare
Dsui_2614 -0.8 -2.2 hypothetical protein compare
Dsui_0425 -0.8 -2.4 putative Fe-S oxidoreductase compare
Dsui_1605 -0.8 -1.9 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_2033 -0.8 -1.6 transcriptional regulator compare
Dsui_1402 -0.8 -2.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Dsui_2304 -0.8 -2.8 electron transfer flavoprotein, alpha subunit compare
Dsui_3415 -0.8 -4.1 FAD/FMN-dependent dehydrogenase compare
Dsui_2080 -0.8 -1.6 response regulator compare
Dsui_2604 -0.8 -2.0 hypothetical protein compare
Dsui_0223 -0.8 -3.7 methylase involved in ubiquinone/menaquinone biosynthesis compare
Dsui_2697 -0.8 -3.6 peptide deformylase compare
Dsui_3239 -0.8 -5.0 acetyl-CoA acetyltransferase compare
Dsui_2457 -0.8 -3.5 GTP-binding protein LepA compare
Dsui_2085 -0.8 -1.8 NADPH-dependent FMN reductase compare
Dsui_3231 -0.8 -2.4 hypothetical protein compare
Dsui_2037 -0.8 -2.8 putative alpha/beta hydrolase compare
Dsui_1892 -0.8 -3.1 transcriptional regulator compare
Dsui_1827 -0.8 -0.5 hypothetical protein compare
Dsui_0176 -0.8 -2.5 ribosome modulation factor compare
Dsui_1126 -0.8 -5.8 outer membrane receptor protein compare
Dsui_1403 -0.8 -1.5 putative NTP binding protein (contains STAS domain) compare
Dsui_1584 -0.8 -1.7 hypothetical protein compare
Dsui_2137 -0.8 -1.5 queuosine biosynthesis protein QueD compare
Dsui_2499 -0.8 -1.3 MerE protein compare
Dsui_0900 -0.8 -4.1 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase compare
Dsui_2301 -0.8 -3.8 diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_2642 -0.8 -2.0 outer membrane protein compare
Dsui_1435 -0.8 -2.9 chemotaxis signal transduction protein compare
Dsui_0260 -0.8 -3.4 sulfate ABC transporter, permease protein CysT compare
Dsui_3151 -0.8 -1.4 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_0687 -0.8 -1.4 Protein of unknown function (DUF2905) compare
Dsui_2531 -0.7 -1.1 uncharacterized protein, YfiH family compare
Dsui_3030 -0.7 -3.5 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit compare
Dsui_2466 -0.7 -1.0 ATP dependent DNA ligase-like protein compare
Dsui_3028 -0.7 -1.5 coenzyme F420-reducing hydrogenase, gamma subunit compare
Dsui_2951 -0.7 -2.9 putative iron-regulated membrane protein compare
Dsui_3017 -0.7 -1.6 uncharacterized conserved small protein containing a coiled-coil domain compare
Dsui_1582 -0.7 -3.3 Fe-S oxidoreductase compare
Dsui_2355 -0.7 -1.2 cytochrome B561 compare
Dsui_2998 -0.7 -2.6 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Dsui_0197 -0.7 -2.1 hypothetical protein compare
Dsui_0981 -0.7 -2.0 enoyl-CoA hydratase/carnithine racemase compare
Dsui_2289 -0.7 -1.9 qaraquat-inducible protein B compare
Dsui_0457 -0.7 -1.4 Protein of unknown function (DUF2782) compare
Dsui_2221 -0.7 -2.1 putative ATPase compare
Dsui_0435 -0.7 -1.4 Sel1 repeat protein compare
Dsui_2519 -0.7 -4.3 methyl-accepting chemotaxis protein compare
Dsui_3213 -0.7 -1.9 CBS domain-containing protein compare
Dsui_2090 -0.7 -1.5 transcriptional regulator compare
Dsui_1609 -0.7 -1.1 Thiopurine S-methyltransferase (TPMT) compare
Dsui_3532 -0.7 -3.1 Protein of unknown function (DUF3106) compare
Dsui_1312 -0.7 -2.1 NTP pyrophosphohydrolase compare
Dsui_2364 -0.7 -2.5 ABC-type sugar transport system, periplasmic component compare
Dsui_3523 -0.7 -1.7 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_3071 -0.7 -2.8 SprA-related family compare
Dsui_2591 -0.7 -2.5 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_0133 -0.7 -3.0 hypothetical protein compare
Dsui_3521 -0.7 -2.5 membrane-fusion protein compare
Dsui_0042 -0.7 -1.0 Protein of unknown function (DUF2892) compare
Dsui_0740 -0.7 -3.0 methionine biosynthesis protein MetW compare
Dsui_2717 -0.7 -1.7 RNA polymerase-binding protein DksA compare
Dsui_3349 -0.7 -1.3 hypothetical protein compare
Dsui_2500 -0.7 -3.2 site-specific recombinase, DNA invertase Pin compare
Dsui_1433 -0.7 -1.0 chemotaxis protein compare
Dsui_0859 -0.7 -1.1 hypothetical protein compare
Dsui_1857 -0.7 -1.3 putative permease, DMT superfamily compare
Dsui_0102 -0.7 -1.5 transcription elongation factor compare
Dsui_1580 -0.7 -3.5 PAS domain S-box compare
Dsui_1833 -0.7 -1.7 nitrate transport ATP-binding subunits C and D compare
Dsui_1370 -0.7 -1.9 putative permease, DMT superfamily compare
Dsui_2787 -0.7 -2.6 membrane carboxypeptidase/penicillin-binding protein compare
Dsui_1643 -0.7 -1.6 uncharacterized protein involved in response to NO compare
Dsui_2046 -0.7 -1.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_3520 -0.7 -5.0 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_1409 -0.7 -2.1 cation diffusion facilitator family transporter compare
Dsui_1118 -0.7 -4.6 putative permease compare
Dsui_0193 -0.7 -2.6 putative phage protein, putative large terminase compare
Dsui_2705 -0.7 -1.3 permease compare
Dsui_0003 -0.7 -2.0 putative Zn-dependent protease compare
Dsui_0651 -0.7 -1.5 tyrosine recombinase XerC compare
Dsui_0685 -0.7 -1.0 glutathione S-transferase compare
Dsui_2265 -0.6 -1.1 DNA-directed DNA polymerase III PolC compare
Dsui_1583 -0.6 -3.8 (4Fe-4S) cluster-containing protein compare
Dsui_2164 -0.6 -1.3 signal transduction histidine kinase compare
Dsui_2704 -0.6 -0.8 yecA family protein compare
Dsui_2887 -0.6 -2.2 hypothetical protein compare
Dsui_1679 -0.6 -2.6 Mg chelatase, cobalamin biosynthesis protein CobN compare
Dsui_3396 -0.6 -1.2 transcriptional regulator compare
Dsui_0978 -0.6 -2.0 2-hydroxychromene-2-carboxylate isomerase compare
Dsui_3150 -0.6 -1.5 electron transfer flavoprotein, beta subunit compare
Dsui_0253 -0.6 -1.3 HIRAN domain-containing protein compare
Dsui_2240 -0.6 -1.7 PAS domain S-box compare
Dsui_0409 -0.6 -2.3 RND family efflux transporter, MFP subunit compare
Dsui_2766 -0.6 -2.1 putative homoserine kinase type II (protein kinase fold) compare
Dsui_3268 -0.6 -1.4 exodeoxyribonuclease VII, large subunit compare
Dsui_1010 -0.6 -2.0 ABC-type branched-chain amino acid transport system, periplasmic component compare
Dsui_1392 -0.6 -1.7 type II secretory pathway, component PulF compare
Dsui_1084 -0.6 -4.2 bacteriophage protein gp37 compare
Dsui_1494 -0.6 -3.8 ATP-dependent metalloprotease FtsH compare
Dsui_3171 -0.6 -1.2 putative protein-disulfide isomerase compare
Dsui_0174 -0.6 -1.1 hypothetical protein compare
Dsui_2310 -0.6 -2.6 tRNA 2-selenouridine synthase compare
Dsui_1117 -0.6 -2.1 hemerythrin-like metal-binding domain-containing protein compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms