Experiment set1H23 for Dechlorosoma suillum PS

Compare to:

defined media with 30 mM sodium lactate

200 most important genes:

  gene name fitness t score description  
Dsui_1581 -6.2 -4.2 response regulator compare
Dsui_1445 -4.2 -4.0 succinyl-CoA synthetase, beta subunit compare
Dsui_2368 -3.8 -3.5 serine O-acetyltransferase compare
Dsui_1096 -3.5 -10.3 glutamate synthase family protein compare
Dsui_3054 -3.4 -2.9 phosphate ABC transporter, permease protein PstA compare
Dsui_3181 -3.4 -1.8 RND family efflux transporter, MFP subunit compare
Dsui_1097 -3.3 -3.2 NADH/NADPH-dependent glutamate synthase small subunit compare
Dsui_1446 -3.1 -4.2 succinyl-CoA synthetase, alpha subunit compare
Dsui_1578 -2.9 -5.5 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_0859 -2.8 -2.7 hypothetical protein compare
Dsui_0401 -2.7 -2.6 nucleoside-diphosphate-sugar epimerase compare
Dsui_1827 -2.6 -2.4 hypothetical protein compare
Dsui_0469 -2.5 -2.4 lipopolysaccharide heptosyltransferase III, putative compare
Dsui_2981 -2.4 -1.6 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_2433 -2.4 -7.6 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_3457 -2.3 -1.8 K+ transporter compare
Dsui_0725 -2.2 -4.1 putative hydrolase of the alpha/beta superfamily compare
Dsui_2673 -2.1 -3.4 hypothetical protein compare
Dsui_3081 -2.1 -1.7 chaperone protein DnaK compare
Dsui_2295 -2.0 -2.3 transcriptional regulator compare
Dsui_1970 -1.9 -4.2 metalloendopeptidase-like membrane protein compare
Dsui_1314 -1.8 -1.7 guanyl-specific ribonuclease Sa compare
Dsui_1391 -1.7 -2.6 hypothetical protein compare
Dsui_1576 -1.7 -1.5 dihydrolipoamide dehydrogenase compare
Dsui_0745 -1.7 -1.7 membrane-associated lipoprotein involved in thiamine biosynthesis compare
Dsui_2304 -1.6 -4.5 electron transfer flavoprotein, alpha subunit compare
Dsui_0259 -1.5 -4.0 sulfate ABC transporter, permease protein CysW compare
Dsui_2887 -1.5 -4.1 hypothetical protein compare
Dsui_1947 -1.5 -1.9 nucleotide sugar dehydrogenase compare
Dsui_1534 -1.4 -1.3 ribosomal protein L33 compare
Dsui_0685 -1.4 -2.1 glutathione S-transferase compare
Dsui_0292 -1.4 -1.6 putative signal transduction protein containing EAL and modified HD-GYP domains compare
Dsui_3231 -1.4 -3.7 hypothetical protein compare
Dsui_2617 -1.4 -1.7 DNA recombination-dependent growth factor C compare
Dsui_0992 -1.4 -2.0 putative membrane protein compare
Dsui_1584 -1.4 -5.7 hypothetical protein compare
Dsui_3467 -1.3 -2.3 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Dsui_1094 -1.3 -2.1 shikimate kinase compare
Dsui_1577 -1.3 -1.2 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_3207 -1.3 -1.5 ankyrin repeat-containing protein compare
Dsui_1179 -1.3 -2.1 ribosome-associated heat shock protein implicated in recycling of 50S subunit compare
Dsui_2586 -1.2 -2.9 type IV secretory pathway, VirB9 component compare
Dsui_0549 -1.2 -3.2 queuosine biosynthesis protein QueC compare
Dsui_2454 -1.2 -2.0 Positive regulator of sigma E activity compare
Dsui_3295 -1.2 -3.0 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Dsui_2560 -1.2 -2.3 zonula occludens toxin compare
Dsui_2611 -1.2 -2.0 hypothetical protein compare
Dsui_0434 -1.1 -2.5 ribonuclease, Rne/Rng family compare
Dsui_2745 -1.1 -1.3 methyl-accepting chemotaxis protein compare
Dsui_0260 -1.1 -4.7 sulfate ABC transporter, permease protein CysT compare
Dsui_1649 -1.1 -1.2 universal stress protein UspA-like protein compare
Dsui_0500 -1.1 -2.4 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_2567 -1.1 -8.6 hypothetical protein compare
Dsui_0192 -1.1 -2.7 hypothetical protein compare
Dsui_3414 -1.1 -4.5 FAD/FMN-dependent dehydrogenase compare
Dsui_2908 -1.1 -2.7 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_2086 -1.1 -1.9 cytochrome c compare
Dsui_0946 -1.1 -1.6 putative nitrogen fixation protein FixT compare
Dsui_2466 -1.1 -1.5 ATP dependent DNA ligase-like protein compare
Dsui_0099 -1.1 -1.6 putative periplasmic or secreted lipoprotein compare
Dsui_2600 -1.0 -2.4 hypothetical protein compare
Dsui_1525 -1.0 -4.7 sulfate/thiosulfate-binding protein compare
Dsui_3239 -1.0 -6.6 acetyl-CoA acetyltransferase compare
Dsui_0706 -1.0 -1.1 hypothetical protein compare
Dsui_2152 -1.0 -2.7 molybdenum cofactor synthesis domain protein compare
Dsui_2034 -1.0 -1.8 DNA gyrase inhibitor compare
Dsui_2741 -1.0 -3.2 PAS domain S-box compare
Dsui_0660 -1.0 -3.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_2703 -1.0 -2.2 chromosome segregation protein SMC compare
Dsui_1609 -1.0 -1.5 Thiopurine S-methyltransferase (TPMT) compare
Dsui_2044 -0.9 -1.8 Rhodanese-related sulfurtransferase compare
Dsui_0901 -0.9 -3.3 hypothetical protein compare
Dsui_1451 -0.9 -2.4 FHA domain-containing protein compare
Dsui_2080 -0.9 -2.1 response regulator compare
Dsui_0811 -0.9 -3.6 hypothetical protein compare
Dsui_2189 -0.9 -2.1 acyl-CoA synthetase (NDP forming) compare
Dsui_2963 -0.9 -2.6 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit,precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit compare
Dsui_0391 -0.9 -1.4 Protein of unknown function (DUF3426) compare
Dsui_0726 -0.9 -3.2 ferredoxin compare
Dsui_3030 -0.9 -4.1 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit compare
Dsui_1275 -0.9 -2.3 protein-export chaperone SecB compare
Dsui_1443 -0.9 -2.2 phenylacetate-CoA ligase compare
Dsui_0477 -0.9 -1.4 tol-pal system protein YbgF compare
Dsui_2305 -0.9 -4.1 electron transfer flavoprotein, beta subunit compare
Dsui_0398 -0.9 -3.4 UDP-glucose-4-epimerase compare
Dsui_2533 -0.9 -1.5 TRAP-type C4-dicarboxylate transport system, small permease component compare
Dsui_0173 -0.9 -1.9 site-specific DNA methylase compare
Dsui_1688 -0.9 -1.3 hypothetical protein compare
Dsui_2615 -0.8 -3.2 hypothetical protein compare
Dsui_3393 -0.8 -2.6 Kef-type K+ transport system, membrane component compare
Dsui_2610 -0.8 -2.3 single-stranded DNA-binding protein compare
Dsui_0810 -0.8 -3.8 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Dsui_0554 -0.8 -1.9 uncharacterized conserved small protein containing a coiled-coil domain compare
Dsui_0850 -0.8 -4.2 hypothetical protein compare
Dsui_1895 -0.8 -3.3 hypothetical protein compare
Dsui_3194 -0.8 -2.7 pseudouridylate synthase I compare
Dsui_3349 -0.8 -1.7 hypothetical protein compare
Dsui_2277 -0.8 -1.7 Rhs element Vgr protein compare
Dsui_1583 -0.8 -5.2 (4Fe-4S) cluster-containing protein compare
Dsui_3061 -0.8 -2.3 putative RNA-binding protein, YhbY family compare
Dsui_0460 -0.8 -1.4 ADP-heptose:LPS heptosyltransferase compare
Dsui_1839 -0.8 -1.6 hypothetical protein compare
Dsui_1682 -0.8 -1.5 biopolymer transport protein compare
Dsui_3531 -0.8 -1.0 Protein of unknown function (DUF3619) compare
Dsui_1589 -0.8 -1.2 Nucleoside-diphosphate-sugar pyrophosphorylase family protein compare
Dsui_2868 -0.8 -1.4 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein compare
Dsui_1582 -0.8 -3.9 Fe-S oxidoreductase compare
Dsui_2563 -0.7 -1.5 hypothetical protein compare
Dsui_3429 -0.7 -1.9 RND family efflux transporter, MFP subunit compare
Dsui_2604 -0.7 -2.1 hypothetical protein compare
Dsui_0039 -0.7 -1.6 dimethyladenosine transferase compare
Dsui_0617 -0.7 -1.3 hypothetical protein compare
Dsui_2151 -0.7 -1.9 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
Dsui_3352 -0.7 -1.2 cAMP-binding protein compare
Dsui_3268 -0.7 -1.6 exodeoxyribonuclease VII, large subunit compare
Dsui_1857 -0.7 -1.4 putative permease, DMT superfamily compare
Dsui_3371 -0.7 -2.3 putative oxidoreductase, aryl-alcohol dehydrogenase like protein compare
Dsui_1810 -0.7 -3.6 DNA-binding protein, YbaB/EbfC family compare
Dsui_3413 -0.7 -2.0 Fe-S oxidoreductase compare
Dsui_1370 -0.7 -1.4 putative permease, DMT superfamily compare
Dsui_1955 -0.7 -2.4 3'-5' exonuclease compare
Dsui_2935 -0.7 -1.1 NAD/NADP transhydrogenase alpha subunit compare
Dsui_3524 -0.7 -2.4 signal transduction histidine kinase compare
Dsui_3213 -0.7 -1.7 CBS domain-containing protein compare
Dsui_3130 -0.7 -0.9 tRNA-Leu compare
Dsui_3072 -0.7 -2.2 DNA repair protein RecN compare
Dsui_1877 -0.7 -2.1 NADH:flavin oxidoreductase compare
Dsui_3323 -0.7 -2.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Dsui_1890 -0.7 -2.4 diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_2951 -0.7 -2.8 putative iron-regulated membrane protein compare
Dsui_2727 -0.7 -1.7 hypothetical protein compare
Dsui_2327 -0.7 -2.5 putative toxin-antitoxin system toxin component, PIN family compare
Dsui_0656 -0.7 -4.5 chemotaxis protein histidine kinase-like protein compare
Dsui_1620 -0.7 -1.8 PAP2 (acid phosphatase) superfamily protein compare
Dsui_0418 -0.7 -2.1 putative Na+-dependent transporter compare
Dsui_1401 -0.7 -2.2 surface lipoprotein compare
Dsui_1221 -0.7 -2.0 hypothetical protein compare
Dsui_2032 -0.7 -1.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_0409 -0.7 -3.1 RND family efflux transporter, MFP subunit compare
Dsui_3253 -0.7 -2.6 Protein of unknown function (DUF3579) compare
Dsui_3521 -0.7 -2.2 membrane-fusion protein compare
Dsui_0174 -0.7 -1.2 hypothetical protein compare
Dsui_1427 -0.7 -1.7 dinuclear metal center protein, YbgI/SA1388 family compare
Dsui_2496 -0.7 -1.3 Membrane transport protein MerF compare
Dsui_3240 -0.6 -3.6 cobalamin biosynthesis protein cobD/CbiB compare
Dsui_2867 -0.6 -1.2 surface antigen family protein compare
Dsui_2583 -0.6 -2.1 hypothetical protein compare
Dsui_0472 -0.6 -2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
Dsui_3114 -0.6 -2.0 heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Dsui_1863 -0.6 -2.5 response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Dsui_2024 -0.6 -1.6 esterase/lipase compare
Dsui_2783 -0.6 -1.6 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_2578 -0.6 -1.3 hypothetical protein compare
Dsui_2590 -0.6 -1.8 Pilin accessory protein (PilO) compare
Dsui_1266 -0.6 -1.2 transcriptional regulator NrdR compare
Dsui_1676 -0.6 -1.8 biopolymer transport protein compare
Dsui_0044 -0.6 -1.7 exodeoxyribonuclease III compare
Dsui_2164 -0.6 -1.3 signal transduction histidine kinase compare
Dsui_3224 -0.6 -1.1 pterin-4a-carbinolamine dehydratase compare
Dsui_1968 -0.6 -3.6 5''/3''-nucleotidase SurE compare
Dsui_1579 -0.6 -2.7 ABC-type branched-chain amino acid transport system, periplasmic component compare
Dsui_2476 -0.6 -0.9 hypothetical protein compare
Dsui_2973 -0.6 -2.7 putative arginyl-tRNA:protein arginylyltransferase compare
Dsui_3463 -0.6 -2.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Dsui_2952 -0.6 -2.7 outer membrane porin, OprD family compare
Dsui_0650 -0.6 -1.6 hypothetical protein compare
Dsui_0744 -0.6 -1.5 phosphotransferase system, mannose/fructose-specific component IIA compare
Dsui_2257 -0.6 -2.4 transcriptional regulator compare
Dsui_2198 -0.6 -2.4 ATP-dependent protease La compare
Dsui_0001 -0.6 -2.3 aminodeoxychorismate synthase, component I compare
Dsui_2519 -0.6 -3.3 methyl-accepting chemotaxis protein compare
Dsui_1797 -0.6 -2.2 putative phage-type endonuclease compare
Dsui_0223 -0.6 -3.5 methylase involved in ubiquinone/menaquinone biosynthesis compare
Dsui_1352 -0.6 -2.1 acyl dehydratase compare
Dsui_1645 -0.6 -1.7 hemerythrin HHE cation binding domain-containing protein compare
Dsui_0018 -0.6 -2.3 putative permease compare
Dsui_2422 -0.6 -1.4 truncated hemoglobin compare
Dsui_3017 -0.6 -1.3 uncharacterized conserved small protein containing a coiled-coil domain compare
Dsui_1650 -0.6 -3.4 copper/silver-translocating P-type ATPase compare
Dsui_2553 -0.6 -1.8 Phage X family/Phage replication protein CRI compare
Dsui_2221 -0.6 -1.9 putative ATPase compare
Dsui_2589 -0.6 -1.8 type II secretory pathway, component PulD compare
Dsui_0603 -0.6 -2.0 pyridoxal phosphate enzyme, YggS family compare
Dsui_2097 -0.6 -1.4 putative phosphohydrolase compare
Dsui_2893 -0.6 -1.9 diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_0492 -0.6 -1.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Dsui_2008 -0.6 -2.1 tetratricopeptide repeat protein compare
Dsui_2757 -0.6 -1.6 spermidine synthase compare
Dsui_2594 -0.6 -1.9 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_1403 -0.5 -1.2 putative NTP binding protein (contains STAS domain) compare
Dsui_3368 -0.5 -1.4 hypothetical protein compare
Dsui_2933 -0.5 -1.4 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_2559 -0.5 -1.3 Protein of unknown function (DUF2523) compare
Dsui_2768 -0.5 -1.5 uncharacterized protein involved in outer membrane biogenesis compare
Dsui_0727 -0.5 -2.4 putative integral membrane protein compare
Dsui_3397 -0.5 -3.3 Protein of unknown function (DUF1780) compare
Dsui_3520 -0.5 -3.7 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_3088 -0.5 -1.8 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Dsui_0837 -0.5 -1.6 tRNA modification GTPase TrmE compare
Dsui_2599 -0.5 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms