Experiment set1H22 for Dechlorosoma suillum PS

Compare to:

defined media with 30 mM sodium lactate

200 most important genes:

  gene name fitness t score description  
Dsui_1581 -4.7 -3.1 response regulator compare
Dsui_1445 -3.8 -4.5 succinyl-CoA synthetase, beta subunit compare
Dsui_1096 -3.8 -11.1 glutamate synthase family protein compare
Dsui_1446 -3.3 -4.5 succinyl-CoA synthetase, alpha subunit compare
Dsui_2368 -3.3 -3.4 serine O-acetyltransferase compare
Dsui_1578 -2.9 -5.8 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_1059 -2.6 -2.4 thiamine monophosphate synthase compare
Dsui_1097 -2.6 -4.2 NADH/NADPH-dependent glutamate synthase small subunit compare
Dsui_0745 -2.5 -2.9 membrane-associated lipoprotein involved in thiamine biosynthesis compare
Dsui_2433 -2.3 -8.1 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_1947 -2.3 -2.6 nucleotide sugar dehydrogenase compare
Dsui_3457 -2.1 -2.0 K+ transporter compare
Dsui_2752 -2.1 -2.0 ABC-type multidrug transport system, ATPase and permease component compare
Dsui_3484 -2.1 -1.9 putative permease compare
Dsui_1992 -2.0 -2.1 ribosomal protein L9 compare
Dsui_0401 -1.8 -2.1 nucleoside-diphosphate-sugar epimerase compare
Dsui_1094 -1.7 -2.5 shikimate kinase compare
Dsui_2981 -1.6 -1.4 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_0992 -1.5 -1.2 putative membrane protein compare
Dsui_1970 -1.5 -3.5 metalloendopeptidase-like membrane protein compare
Dsui_3080 -1.4 -1.4 molecular chaperone GrpE (heat shock protein) compare
Dsui_3081 -1.4 -1.5 chaperone protein DnaK compare
Dsui_0859 -1.4 -1.5 hypothetical protein compare
Dsui_3295 -1.3 -3.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Dsui_0007 -1.3 -1.7 cold shock protein compare
Dsui_2908 -1.3 -3.4 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_0862 -1.3 -1.5 hypothetical protein compare
Dsui_0477 -1.2 -2.9 tol-pal system protein YbgF compare
Dsui_2606 -1.2 -1.8 soluble lytic murein transglycosylase-like protein compare
Dsui_3495 -1.2 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Dsui_1577 -1.2 -1.4 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_0469 -1.2 -1.7 lipopolysaccharide heptosyltransferase III, putative compare
Dsui_1955 -1.2 -3.5 3'-5' exonuclease compare
Dsui_0259 -1.2 -3.7 sulfate ABC transporter, permease protein CysW compare
Dsui_2673 -1.2 -2.6 hypothetical protein compare
Dsui_1179 -1.2 -2.2 ribosome-associated heat shock protein implicated in recycling of 50S subunit compare
Dsui_0215 -1.2 -2.0 hypothetical protein compare
Dsui_1275 -1.1 -2.9 protein-export chaperone SecB compare
Dsui_2305 -1.1 -5.0 electron transfer flavoprotein, beta subunit compare
Dsui_2567 -1.1 -9.1 hypothetical protein compare
Dsui_1649 -1.1 -1.2 universal stress protein UspA-like protein compare
Dsui_2046 -1.1 -2.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_2614 -1.1 -2.1 hypothetical protein compare
Dsui_3239 -1.1 -5.8 acetyl-CoA acetyltransferase compare
Dsui_0901 -1.1 -1.8 hypothetical protein compare
Dsui_0039 -1.0 -1.5 dimethyladenosine transferase compare
Dsui_3414 -1.0 -4.7 FAD/FMN-dependent dehydrogenase compare
Dsui_0175 -1.0 -1.9 hypothetical protein compare
Dsui_1525 -1.0 -4.1 sulfate/thiosulfate-binding protein compare
Dsui_2560 -1.0 -1.5 zonula occludens toxin compare
Dsui_1451 -0.9 -2.7 FHA domain-containing protein compare
Dsui_2454 -0.9 -3.5 Positive regulator of sigma E activity compare
Dsui_2717 -0.9 -2.4 RNA polymerase-binding protein DksA compare
Dsui_2137 -0.9 -1.9 queuosine biosynthesis protein QueD compare
Dsui_2041 -0.9 -2.2 enoyl-CoA hydratase/carnithine racemase compare
Dsui_3063 -0.9 -1.0 transcription elongation factor GreA compare
Dsui_3375 -0.9 -0.9 hypothetical protein compare
Dsui_2873 -0.9 -1.2 Peroxiredoxin compare
Dsui_0434 -0.9 -2.2 ribonuclease, Rne/Rng family compare
Dsui_3446 -0.8 -2.2 4-hydroxybenzoate polyprenyltransferase-like prenyltransferase compare
Dsui_1391 -0.8 -2.0 hypothetical protein compare
Dsui_3054 -0.8 -1.1 phosphate ABC transporter, permease protein PstA compare
Dsui_1583 -0.8 -5.3 (4Fe-4S) cluster-containing protein compare
Dsui_2443 -0.8 -1.6 putative metal-binding protein, possibly nucleic-acid binding protein compare
Dsui_1266 -0.8 -1.8 transcriptional regulator NrdR compare
Dsui_0099 -0.8 -1.3 putative periplasmic or secreted lipoprotein compare
Dsui_3220 -0.8 -1.2 PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase compare
Dsui_0500 -0.8 -2.0 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_2919 -0.8 -1.7 addiction module antidote protein, HigA family compare
Dsui_0435 -0.8 -2.1 Sel1 repeat protein compare
Dsui_1584 -0.8 -3.5 hypothetical protein compare
Dsui_2748 -0.8 -2.0 hypothetical protein compare
Dsui_1037 -0.8 -0.8 ribosomal protein L25, Ctc-form compare
Dsui_0747 -0.8 -1.7 glutamate--cysteine ligase compare
Dsui_1004 -0.8 -0.7 conserved protein of DIM6/NTAB family compare
Dsui_3231 -0.8 -2.6 hypothetical protein compare
Dsui_0725 -0.8 -2.0 putative hydrolase of the alpha/beta superfamily compare
Dsui_3253 -0.7 -2.9 Protein of unknown function (DUF3579) compare
Dsui_2668 -0.7 -1.9 putative phosphatase compare
Dsui_2533 -0.7 -1.8 TRAP-type C4-dicarboxylate transport system, small permease component compare
Dsui_3351 -0.7 -1.2 cytochrome c peroxidase compare
Dsui_1523 -0.7 -2.4 drug resistance transporter, EmrB/QacA subfamily compare
Dsui_2611 -0.7 -1.8 hypothetical protein compare
Dsui_1251 -0.7 -1.5 acylphosphatase compare
Dsui_2559 -0.7 -2.0 Protein of unknown function (DUF2523) compare
Dsui_2642 -0.7 -2.1 outer membrane protein compare
Dsui_2398 -0.7 -1.8 hypothetical protein compare
Dsui_2221 -0.7 -2.4 putative ATPase compare
Dsui_2902 -0.7 -0.8 hypothetical protein compare
Dsui_2277 -0.7 -1.6 Rhs element Vgr protein compare
Dsui_2164 -0.7 -1.4 signal transduction histidine kinase compare
Dsui_2563 -0.7 -1.5 hypothetical protein compare
Dsui_2578 -0.7 -1.7 hypothetical protein compare
Dsui_0744 -0.7 -2.1 phosphotransferase system, mannose/fructose-specific component IIA compare
Dsui_2610 -0.7 -1.9 single-stranded DNA-binding protein compare
Dsui_3521 -0.7 -2.8 membrane-fusion protein compare
Dsui_0260 -0.7 -3.2 sulfate ABC transporter, permease protein CysT compare
Dsui_2312 -0.7 -1.5 3-hydroxybutyrate dehydrogenase compare
Dsui_2226 -0.7 -2.1 DNA-binding domain-containing protein, AraC-type compare
Dsui_0707 -0.7 -1.8 protein RecA compare
Dsui_0860 -0.7 -2.0 hypothetical protein compare
Dsui_0393 -0.7 -1.6 glycosyltransferase compare
Dsui_1904 -0.7 -3.1 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_1605 -0.7 -2.0 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_2553 -0.7 -1.7 Phage X family/Phage replication protein CRI compare
Dsui_2304 -0.7 -1.7 electron transfer flavoprotein, alpha subunit compare
Dsui_1381 -0.6 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
Dsui_1392 -0.6 -1.6 type II secretory pathway, component PulF compare
Dsui_0740 -0.6 -2.9 methionine biosynthesis protein MetW compare
Dsui_0398 -0.6 -2.9 UDP-glucose-4-epimerase compare
Dsui_3415 -0.6 -2.9 FAD/FMN-dependent dehydrogenase compare
Dsui_1582 -0.6 -3.1 Fe-S oxidoreductase compare
Dsui_1640 -0.6 -1.7 hypothetical protein compare
Dsui_3508 -0.6 -0.7 exodeoxyribonuclease VII, small subunit compare
Dsui_1370 -0.6 -1.8 putative permease, DMT superfamily compare
Dsui_1325 -0.6 -1.9 ADP-ribose pyrophosphatase compare
Dsui_3423 -0.6 -1.2 hydroxypyruvate isomerase compare
Dsui_2076 -0.6 -1.3 cytochrome c, mono- and diheme variants family compare
Dsui_1576 -0.6 -0.7 dihydrolipoamide dehydrogenase compare
Dsui_1580 -0.6 -3.3 PAS domain S-box compare
Dsui_2846 -0.6 -4.3 ATPase compare
Dsui_2189 -0.6 -1.6 acyl-CoA synthetase (NDP forming) compare
Dsui_0258 -0.6 -1.8 sulfate ABC transporter, ATP-binding protein compare
Dsui_2590 -0.6 -1.9 Pilin accessory protein (PilO) compare
Dsui_0710 -0.6 -1.8 competence/damage-inducible protein CinA-like protein compare
Dsui_0044 -0.6 -1.0 exodeoxyribonuclease III compare
Dsui_2407 -0.6 -1.1 beta-propeller domain-containing protein, methanol dehydrogenase compare
Dsui_0846 -0.6 -2.3 glucose-inhibited division protein A compare
Dsui_2887 -0.6 -2.2 hypothetical protein compare
Dsui_1463 -0.6 -1.6 transcriptional activator of acetoin/glycerol metabolism compare
Dsui_2555 -0.6 -1.5 Bacteriophage coat protein B compare
Dsui_0025 -0.6 -1.4 hypothetical protein compare
Dsui_1515 -0.6 -1.7 poly(A) polymerase compare
Dsui_1084 -0.6 -4.4 bacteriophage protein gp37 compare
Dsui_2080 -0.6 -1.4 response regulator compare
Dsui_2583 -0.6 -2.0 hypothetical protein compare
Dsui_3323 -0.6 -1.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Dsui_1579 -0.6 -2.3 ABC-type branched-chain amino acid transport system, periplasmic component compare
Dsui_2070 -0.6 -2.5 transcriptional regulator compare
Dsui_0042 -0.6 -1.0 Protein of unknown function (DUF2892) compare
Dsui_0726 -0.6 -2.2 ferredoxin compare
Dsui_3524 -0.6 -2.1 signal transduction histidine kinase compare
Dsui_2251 -0.6 -1.8 signal transduction histidine kinase compare
Dsui_0018 -0.6 -1.3 putative permease compare
Dsui_2430 -0.6 -1.5 tRNA-Asn compare
Dsui_0503 -0.6 -1.8 Mg-dependent DNase compare
Dsui_1893 -0.6 -0.9 putative membrane protein compare
Dsui_2556 -0.6 -1.7 hypothetical protein compare
Dsui_3019 -0.5 -2.6 putative hydrolase or acyltransferase of alpha/beta superfamily compare
Dsui_3342 -0.5 -2.3 ketosteroid isomerase-like enzyme compare
Dsui_2341 -0.5 -1.4 ABC-type multidrug transport system, ATPase component compare
Dsui_0418 -0.5 -1.7 putative Na+-dependent transporter compare
Dsui_0499 -0.5 -1.0 DNA-directed RNA polymerase, omega subunit compare
Dsui_3462 -0.5 -2.1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component compare
Dsui_1968 -0.5 -3.3 5''/3''-nucleotidase SurE compare
Dsui_0087 -0.5 -3.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Dsui_1357 -0.5 -1.1 hypothetical protein compare
Dsui_2355 -0.5 -1.0 cytochrome B561 compare
Dsui_2457 -0.5 -2.6 GTP-binding protein LepA compare
Dsui_2383 -0.5 -1.4 hypothetical protein compare
Dsui_1590 -0.5 -1.4 hypothetical protein compare
Dsui_0850 -0.5 -2.0 hypothetical protein compare
Dsui_0171 -0.5 -1.5 putative transcriptional regulator compare
Dsui_0557 -0.5 -1.2 NifQ compare
Dsui_1448 -0.5 -3.1 putative ornithine cyclodeaminase, mu-crystallin compare
Dsui_1796 -0.5 -3.0 phage/plasmid-related protein TIGR03299 compare
Dsui_3474 -0.5 -1.8 chemotaxis protein histidine kinase-like protein compare
Dsui_1599 -0.5 -2.7 putative enzyme of heme biosynthesis compare
Dsui_2083 -0.5 -2.1 hypothetical protein compare
Dsui_2593 -0.5 -2.6 PilS N terminal protein compare
Dsui_2948 -0.5 -1.0 RNA polymerase sigma factor, sigma-70 family compare
Dsui_2933 -0.5 -1.4 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_3467 -0.5 -1.0 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Dsui_2802 -0.5 -1.8 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Dsui_1682 -0.5 -1.1 biopolymer transport protein compare
Dsui_2042 -0.5 -1.4 cystathionine beta-lyase/cystathionine gamma-synthase compare
Dsui_1117 -0.5 -2.0 hemerythrin-like metal-binding domain-containing protein compare
Dsui_1827 -0.5 -0.6 hypothetical protein compare
Dsui_2951 -0.5 -1.7 putative iron-regulated membrane protein compare
Dsui_2286 -0.5 -1.0 putative hydrolase or acyltransferase of alpha/beta superfamily compare
Dsui_0248 -0.5 -1.5 Protein of unknown function (DUF3025) compare
Dsui_2228 -0.5 -1.3 Zn-dependent alcohol dehydrogenase compare
Dsui_2382 -0.5 -1.9 PAS domain S-box compare
Dsui_2644 -0.5 -1.5 heavy metal response regulator compare
Dsui_0923 -0.5 -2.2 putative iron-regulated membrane protein compare
Dsui_2531 -0.5 -1.2 uncharacterized protein, YfiH family compare
Dsui_3224 -0.5 -0.7 pterin-4a-carbinolamine dehydratase compare
Dsui_2615 -0.5 -2.1 hypothetical protein compare
Dsui_3413 -0.5 -1.3 Fe-S oxidoreductase compare
Dsui_2929 -0.5 -1.3 hypothetical protein compare
Dsui_0658 -0.5 -1.1 chemotaxis signal transduction protein compare
Dsui_1752 -0.5 -1.5 flagellar export protein FliJ compare
Dsui_2620 -0.5 -2.4 hypothetical protein compare
Dsui_1969 -0.5 -2.6 protein-L-isoaspartate and D-aspartate O-methyltransferase compare
Dsui_1688 -0.5 -0.9 hypothetical protein compare
Dsui_3240 -0.5 -2.9 cobalamin biosynthesis protein cobD/CbiB compare
Dsui_0540 -0.5 -1.2 L-threonine-O-3-phosphate decarboxylase compare
Dsui_2032 -0.5 -1.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_1730 -0.5 -1.0 flagellar biosynthesis anti-sigma factor FlgM compare
Dsui_0660 -0.5 -1.7 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms