Experiment set1H18 for Dechlorosoma suillum PS

Compare to:

defined media with 40 mM sodium acetate

200 most important genes:

  gene name fitness t score description  
Dsui_0011 -3.9 -11.5 isocitrate lyase compare
Dsui_0019 -3.4 -8.8 malate synthase A compare
Dsui_3081 -3.4 -2.3 chaperone protein DnaK compare
Dsui_0859 -3.1 -3.0 hypothetical protein compare
Dsui_0007 -2.9 -2.7 cold shock protein compare
Dsui_0127 -2.5 -10.0 transcriptional regulator compare
Dsui_2562 -2.5 -2.7 hypothetical protein compare
Dsui_0401 -2.5 -1.6 nucleoside-diphosphate-sugar epimerase compare
Dsui_1097 -2.2 -4.4 NADH/NADPH-dependent glutamate synthase small subunit compare
Dsui_0255 -2.2 -1.5 hypothetical protein compare
Dsui_0747 -2.2 -3.9 glutamate--cysteine ligase compare
Dsui_3181 -1.9 -1.4 RND family efflux transporter, MFP subunit compare
Dsui_3253 -1.9 -5.3 Protein of unknown function (DUF3579) compare
Dsui_1096 -1.8 -9.4 glutamate synthase family protein compare
Dsui_0016 -1.8 -5.6 transcriptional regulator conserved
Dsui_2368 -1.7 -3.1 serine O-acetyltransferase compare
Dsui_0850 -1.7 -6.9 hypothetical protein compare
Dsui_2908 -1.7 -4.8 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_3327 -1.6 -2.3 cytochrome b compare
Dsui_0099 -1.6 -1.8 putative periplasmic or secreted lipoprotein compare
Dsui_0434 -1.5 -3.4 ribonuclease, Rne/Rng family compare
Dsui_2196 -1.5 -3.1 ATP-dependent Clp protease, proteolytic subunit ClpP compare
Dsui_0992 -1.5 -2.2 putative membrane protein compare
Dsui_0042 -1.5 -1.9 Protein of unknown function (DUF2892) compare
Dsui_3080 -1.5 -1.5 molecular chaperone GrpE (heat shock protein) compare
Dsui_1576 -1.5 -1.5 dihydrolipoamide dehydrogenase compare
Dsui_1925 -1.4 -7.0 acetolactate synthase, large subunit, biosynthetic type compare
Dsui_2539 -1.3 -2.4 polyhydroxyalkanoate synthesis repressor PhaR compare
Dsui_1976 -1.3 -6.4 deacetylase, histone deacetylase/acetoin utilization protein compare
Dsui_2433 -1.3 -5.7 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_1094 -1.3 -2.1 shikimate kinase compare
Dsui_1325 -1.3 -3.4 ADP-ribose pyrophosphatase compare
Dsui_2586 -1.2 -3.4 type IV secretory pathway, VirB9 component compare
Dsui_3231 -1.2 -3.7 hypothetical protein compare
Dsui_0015 -1.2 -1.5 putative signal-transduction protein containing cAMP-binding and CBS domains compare
Dsui_2080 -1.2 -2.2 response regulator compare
Dsui_0500 -1.2 -3.4 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_0613 -1.2 -1.0 uncharacterized protein SCO1/SenC/PrrC compare
Dsui_2816 -1.1 -2.8 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_2717 -1.1 -2.1 RNA polymerase-binding protein DksA compare
Dsui_2257 -1.1 -4.1 transcriptional regulator compare
Dsui_2352 -1.1 -1.9 hypothetical protein compare
Dsui_2187 -1.1 -2.3 acyl-CoA synthetase/AMP-acid ligase compare
Dsui_2560 -1.1 -2.4 zonula occludens toxin compare
Dsui_2563 -1.1 -2.5 hypothetical protein compare
Dsui_1827 -1.1 -1.4 hypothetical protein compare
Dsui_2143 -1.1 -2.1 hypothetical protein compare
Dsui_3240 -1.1 -6.7 cobalamin biosynthesis protein cobD/CbiB compare
Dsui_2304 -1.1 -2.4 electron transfer flavoprotein, alpha subunit compare
Dsui_0260 -1.1 -4.6 sulfate ABC transporter, permease protein CysT compare
Dsui_0998 -1.1 -2.4 A/G-specific adenine glycosylase compare
Dsui_0259 -1.1 -4.6 sulfate ABC transporter, permease protein CysW compare
Dsui_0650 -1.0 -2.6 hypothetical protein compare
Dsui_0552 -1.0 -2.3 nitrogen fixation protein NifX compare
Dsui_3457 -1.0 -0.9 K+ transporter compare
Dsui_0740 -1.0 -4.9 methionine biosynthesis protein MetW compare
Dsui_2137 -1.0 -1.5 queuosine biosynthesis protein QueD compare
Dsui_2610 -1.0 -2.6 single-stranded DNA-binding protein compare
Dsui_0744 -1.0 -2.9 phosphotransferase system, mannose/fructose-specific component IIA compare
Dsui_2783 -1.0 -2.4 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_1970 -1.0 -2.6 metalloendopeptidase-like membrane protein compare
Dsui_2828 -1.0 -2.7 hypothetical protein compare
Dsui_2559 -1.0 -2.4 Protein of unknown function (DUF2523) compare
Dsui_2611 -0.9 -2.2 hypothetical protein compare
Dsui_1275 -0.9 -2.1 protein-export chaperone SecB compare
Dsui_2606 -0.9 -2.6 soluble lytic murein transglycosylase-like protein compare
Dsui_2981 -0.9 -0.7 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_1682 -0.9 -1.7 biopolymer transport protein compare
Dsui_2122 -0.9 -1.8 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component compare
Dsui_2555 -0.9 -1.7 Bacteriophage coat protein B compare
Dsui_0018 -0.9 -3.5 putative permease compare
Dsui_1060 -0.9 -2.0 putative ATPase (AAA+ superfamily) compare
Dsui_1170 -0.9 -0.9 heme exporter protein CcmD compare
Dsui_0657 -0.9 -4.3 methyl-accepting chemotaxis protein compare
Dsui_0567 -0.9 -1.4 molybdenum-pterin binding domain protein compare
Dsui_3323 -0.9 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Dsui_2305 -0.9 -4.1 electron transfer flavoprotein, beta subunit compare
Dsui_0549 -0.9 -2.9 queuosine biosynthesis protein QueC compare
Dsui_0252 -0.9 -1.5 TIGR00252 family protein compare
Dsui_2694 -0.8 -1.5 ribosomal protein S2 compare
Dsui_1403 -0.8 -1.7 putative NTP binding protein (contains STAS domain) compare
Dsui_1591 -0.8 -1.4 Xaa-Pro aminopeptidase compare
Dsui_2043 -0.8 -1.9 cysteine synthase compare
Dsui_2299 -0.8 -4.0 flavin-dependent dehydrogenase compare
Dsui_1992 -0.8 -1.5 ribosomal protein L9 compare
Dsui_1084 -0.8 -5.5 bacteriophage protein gp37 compare
Dsui_1605 -0.8 -2.1 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_3404 -0.8 -2.5 glutamine synthetase adenylyltransferase compare
Dsui_2198 -0.8 -3.4 ATP-dependent protease La compare
Dsui_3295 -0.8 -2.4 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Dsui_2687 -0.8 -3.8 RIP metalloprotease RseP compare
Dsui_2535 -0.8 -2.5 putative divalent heavy-metal cations transporter compare
Dsui_3523 -0.8 -2.0 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_0799 -0.8 -5.7 succinate CoA transferase compare
Dsui_2752 -0.8 -1.4 ABC-type multidrug transport system, ATPase and permease component compare
Dsui_2083 -0.8 -2.6 hypothetical protein compare
Dsui_1947 -0.8 -1.2 nucleotide sugar dehydrogenase compare
Dsui_3054 -0.7 -1.3 phosphate ABC transporter, permease protein PstA compare
Dsui_3194 -0.7 -2.7 pseudouridylate synthase I compare
Dsui_2673 -0.7 -1.8 hypothetical protein compare
Dsui_0614 -0.7 -1.7 hypothetical protein compare
Dsui_2873 -0.7 -1.0 Peroxiredoxin compare
Dsui_1578 -0.7 -2.6 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_0025 -0.7 -1.1 hypothetical protein compare
Dsui_1629 -0.7 -1.2 Cbb3-type cytochrome oxidase, subunit 3 compare
Dsui_2599 -0.7 -1.2 hypothetical protein compare
Dsui_3155 -0.7 -4.2 tripartite ATP-independent periplasmic transporter solute receptor, DctP family compare
Dsui_1525 -0.7 -3.1 sulfate/thiosulfate-binding protein compare
Dsui_0258 -0.7 -2.5 sulfate ABC transporter, ATP-binding protein compare
Dsui_2905 -0.7 -1.7 flagellin/flagellar hook associated protein compare
Dsui_2228 -0.7 -1.8 Zn-dependent alcohol dehydrogenase compare
Dsui_2867 -0.7 -1.2 surface antigen family protein compare
Dsui_2651 -0.7 -1.0 ankyrin repeat-containing protein compare
Dsui_2745 -0.7 -1.0 methyl-accepting chemotaxis protein compare
Dsui_1264 -0.7 -1.6 fructose-2,6-bisphosphatase compare
Dsui_1857 -0.7 -1.4 putative permease, DMT superfamily compare
Dsui_0685 -0.7 -1.2 glutathione S-transferase compare
Dsui_1316 -0.7 -1.9 hypothetical protein compare
Dsui_0174 -0.7 -1.3 hypothetical protein compare
Dsui_2703 -0.7 -1.8 chromosome segregation protein SMC compare
Dsui_0477 -0.7 -1.7 tol-pal system protein YbgF compare
Dsui_1688 -0.7 -1.0 hypothetical protein compare
Dsui_3156 -0.7 -1.7 putative permease compare
Dsui_0811 -0.7 -2.5 hypothetical protein compare
Dsui_2781 -0.7 -1.4 PAS domain S-box compare
Dsui_0617 -0.7 -1.3 hypothetical protein compare
Dsui_1553 -0.7 -1.2 regulator of competence-specific genes compare
Dsui_2577 -0.7 -3.8 type IV secretory pathway, VirB4 component compare
Dsui_3533 -0.6 -3.3 putative membrane protein/domain protein compare
Dsui_3484 -0.6 -0.8 putative permease compare
Dsui_0542 -0.6 -2.8 cobyric acid synthase CobQ compare
Dsui_3139 -0.6 -1.9 outer membrane assembly lipoprotein YfgL compare
Dsui_0206 -0.6 -2.6 phage conserved hypothetical protein compare
Dsui_0573 -0.6 -1.4 ferredoxin-like protein compare
Dsui_1321 -0.6 -2.8 ABC-type uncharacterized transport system, permease component compare
Dsui_2172 -0.6 -0.9 transcriptional regulator compare
Dsui_2269 -0.6 -1.9 SOS regulatory protein LexA compare
Dsui_2704 -0.6 -1.5 yecA family protein compare
Dsui_1922 -0.6 -2.6 outer membrane receptor for ferrienterochelin and colicins compare
Dsui_0499 -0.6 -1.2 DNA-directed RNA polymerase, omega subunit compare
Dsui_1599 -0.6 -3.2 putative enzyme of heme biosynthesis compare
Dsui_0275 -0.6 -1.5 conserved hypothetical protein, proteobacterial compare
Dsui_2095 -0.6 -1.5 methylase involved in ubiquinone/menaquinone biosynthesis compare
Dsui_1401 -0.6 -2.4 surface lipoprotein compare
Dsui_2330 -0.6 -1.7 3-hydroxyacyl-CoA dehydrogenase compare
Dsui_2533 -0.6 -1.1 TRAP-type C4-dicarboxylate transport system, small permease component compare
Dsui_2853 -0.6 -2.1 PPIC-type PPIASE family protein compare
Dsui_0608 -0.6 -2.6 nucleoside-diphosphate-sugar epimerase compare
Dsui_1348 -0.6 -2.7 hemerythrin-like metal-binding domain-containing protein compare
Dsui_2457 -0.6 -2.4 GTP-binding protein LepA compare
Dsui_2339 -0.6 -1.5 putative domain HDIG-containing protein compare
Dsui_2631 -0.6 -1.9 hypothetical protein compare
Dsui_2005 -0.6 -2.2 DNA polymerase III epsilon subunit-like 3'-5' exonuclease compare
Dsui_2933 -0.6 -1.6 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_3524 -0.6 -2.1 signal transduction histidine kinase compare
Dsui_0550 -0.6 -2.2 nitrogenase molybdenum-iron cofactor biosynthesis protein NifE compare
Dsui_2576 -0.6 -2.4 hypothetical protein compare
Dsui_3474 -0.6 -2.0 chemotaxis protein histidine kinase-like protein compare
Dsui_1451 -0.6 -1.2 FHA domain-containing protein compare
Dsui_1304 -0.6 -2.0 cytochrome c553 compare
Dsui_0474 -0.6 -0.9 universal stress protein UspA-like protein compare
Dsui_2640 -0.6 -2.0 Cytochrome c compare
Dsui_2342 -0.6 -2.0 multidrug resistance efflux pump compare
Dsui_2846 -0.6 -3.4 ATPase compare
Dsui_3130 -0.6 -0.8 tRNA-Leu compare
Dsui_2969 -0.6 -2.2 uroporphyrin-III C-methyltransferase compare
Dsui_2579 -0.6 -3.8 Flp pilus assembly protein, ATPase CpaF compare
Dsui_0017 -0.6 -2.1 2-haloalkanoic acid dehalogenase, type II compare
Dsui_1537 -0.6 -1.1 DNA repair protein radc compare
Dsui_1610 -0.5 -1.2 Protein of unknown function (DUF3079) compare
Dsui_2612 -0.5 -1.6 hypothetical protein compare
Dsui_1465 -0.5 -2.3 hypothetical protein compare
Dsui_1179 -0.5 -0.8 ribosome-associated heat shock protein implicated in recycling of 50S subunit compare
Dsui_1318 -0.5 -3.3 prepilin signal peptidase PulO-like peptidase compare
Dsui_3520 -0.5 -3.8 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_2117 -0.5 -0.9 acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit compare
Dsui_2008 -0.5 -1.8 tetratricopeptide repeat protein compare
Dsui_2582 -0.5 -2.9 hypothetical protein compare
Dsui_2961 -0.5 -1.5 precorrin isomerase compare
Dsui_0192 -0.5 -1.6 hypothetical protein compare
Dsui_2827 -0.5 -2.4 hypothetical protein compare
Dsui_0656 -0.5 -3.4 chemotaxis protein histidine kinase-like protein compare
Dsui_2641 -0.5 -2.0 putative multicopper oxidase compare
Dsui_3522 -0.5 -2.2 outer membrane protein compare
Dsui_2823 -0.5 -1.4 DNA internalization-related competence protein ComEC/Rec2 compare
Dsui_2620 -0.5 -2.5 hypothetical protein compare
Dsui_0588 -0.5 -1.4 putative GTPase, G3E family compare
Dsui_0297 -0.5 -1.9 sugar fermentation stimulation protein compare
Dsui_0222 -0.5 -1.5 uncharacterized protein affecting Mg2+/Co2+ transport compare
Dsui_1459 -0.5 -1.8 hypothetical protein compare
Dsui_1915 -0.5 -1.5 cytochrome bd-type quinol oxidase, subunit 1 compare
Dsui_1852 -0.5 -1.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_0669 -0.5 -1.0 hypothetical protein compare
Dsui_1446 -0.5 -1.5 succinyl-CoA synthetase, alpha subunit compare
Dsui_3467 -0.5 -1.1 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Dsui_3453 -0.5 -2.0 cation diffusion facilitator family transporter compare
Dsui_1900 -0.5 -2.2 hypothetical protein compare
Dsui_1770 -0.5 -3.3 hypothetical protein compare
Dsui_3030 -0.5 -2.5 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit compare
Dsui_0935 -0.5 -0.9 cytochrome c5 compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium acetate in Dechlorosoma suillum PS

For carbon source Sodium acetate across organisms