Experiment set1H13 for Pseudomonas stutzeri RCH2

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0952 -7.4 -5.1 Uncharacterized conserved protein compare
Psest_0155 -6.7 -7.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0152 -6.3 -7.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_1473 -5.8 -9.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3226 -5.8 -1.6 Predicted membrane protein compare
Psest_0153 -5.7 -18.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3810 -5.4 -5.2 orotate phosphoribosyltransferase compare
Psest_3866 -5.3 -24.8 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3650 -5.3 -21.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2584 -5.3 -10.9 Phosphoribosylanthranilate isomerase compare
Psest_0170 -5.2 -10.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_1814 -5.1 -29.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2591 -5.1 -5.6 3-isopropylmalate dehydratase, large subunit compare
Psest_0279 -5.1 -10.9 methionine biosynthesis protein MetW compare
Psest_3298 -5.1 -15.0 histidinol dehydrogenase compare
Psest_1474 -5.1 -3.5 phosphoribosylaminoimidazole synthetase compare
Psest_0954 -5.1 -13.4 Fe-S oxidoreductase compare
Psest_0280 -5.0 -16.6 homoserine O-acetyltransferase compare
Psest_3384 -5.0 -14.4 glutamate 5-kinase compare
Psest_0508 -5.0 -13.2 gamma-glutamyl phosphate reductase compare
Psest_3648 -4.9 -12.9 anthranilate phosphoribosyltransferase compare
Psest_2579 -4.9 -7.5 amidophosphoribosyltransferase compare
Psest_0063 -4.8 -9.7 tryptophan synthase, beta subunit compare
Psest_3299 -4.8 -16.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2578 -4.7 -19.2 O-succinylhomoserine sulfhydrylase compare
Psest_3864 -4.7 -18.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0953 -4.6 -15.6 iron-sulfur cluster-binding protein compare
Psest_0325 -4.6 -14.8 Putative threonine efflux protein compare
Psest_2589 -4.5 -14.9 3-isopropylmalate dehydrogenase compare
Psest_0326 -4.5 -19.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2104 -4.5 -6.4 IscR-regulated protein YhgI compare
Psest_3647 -4.5 -9.3 Indole-3-glycerol phosphate synthase compare
Psest_0687 -4.4 -10.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1947 -4.2 -6.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2590 -4.2 -2.5 3-isopropylmalate dehydratase, small subunit compare
Psest_1295 -4.1 -13.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1452 -4.1 -12.0 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0062 -4.1 -11.6 tryptophan synthase, alpha subunit compare
Psest_3649 -4.0 -13.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1037 -4.0 -4.0 acetolactate synthase, small subunit compare
Psest_0489 -3.9 -6.0 phosphoserine phosphatase SerB compare
Psest_1772 -3.9 -8.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3159 -3.8 -11.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1013 -3.7 -7.1 phosphoribosylamine--glycine ligase compare
Psest_0313 -3.7 -8.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2088 -3.6 -4.2 Uncharacterized protein conserved in bacteria compare
Psest_3944 -3.6 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0285 -3.6 -11.7 pilus retraction protein PilT compare
Psest_1724 -3.5 -4.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1704 -3.4 -4.5 Dehydrogenases (flavoproteins) compare
Psest_1813 -3.3 -13.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0411 -3.2 -14.4 biotin synthetase compare
Psest_3818 -3.1 -11.9 endoribonuclease L-PSP, putative compare
Psest_3123 -3.0 -5.9 dihydroorotase, homodimeric type compare
Psest_0955 -3.0 -7.1 D,L-lactate:H+ symporter (from data) compare
Psest_0445 -3.0 -17.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1292 -2.9 -14.3 monothiol glutaredoxin, Grx4 family compare
Psest_2862 -2.8 -15.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0306 -2.8 -20.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3998 -2.7 -8.3 glutamate--cysteine ligase compare
Psest_3322 -2.6 -19.9 TIGR02099 family protein compare
Psest_2863 -2.6 -8.0 Transcriptional regulator compare
Psest_3297 -2.5 -13.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0442 -2.5 -10.9 ATPases of the AAA+ class compare
Psest_1163 -2.5 -7.3 diguanylate cyclase (GGDEF) domain compare
Psest_0393 -2.5 -8.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2329 -2.5 -17.8 Transcriptional regulator compare
Psest_1765 -2.3 -7.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4085 -2.3 -15.7 Biotin carboxylase compare
Psest_2946 -2.2 -7.5 septum site-determining protein MinD compare
Psest_0412 -2.2 -13.4 8-amino-7-oxononanoate synthase compare
Psest_4084 -2.2 -16.0 oxaloacetate decarboxylase alpha subunit compare
Psest_0415 -2.2 -8.1 dethiobiotin synthase compare
Psest_2232 -2.1 -14.6 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0413 -2.1 -8.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3092 -2.0 -2.7 ribonuclease III, bacterial compare
Psest_1260 -2.0 -10.4 type IV pilus biogenesis/stability protein PilW compare
Psest_0296 -2.0 -11.9 glutathione synthetase, prokaryotic compare
Psest_4086 -2.0 -10.9 Transcriptional regulator compare
Psest_3721 -2.0 -9.1 Malic enzyme compare
Psest_4191 -1.9 -3.6 Transcriptional regulator compare
Psest_0993 -1.9 -10.9 Glucose-6-phosphate isomerase compare
Psest_2324 -1.9 -14.9 hypothetical protein compare
Psest_3717 -1.9 -8.5 Tfp pilus assembly protein PilO compare
Psest_2988 -1.8 -8.9 aspartate kinase, monofunctional class compare
Psest_3943 -1.8 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2067 -1.8 -1.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2981 -1.8 -2.7 sodium pump decarboxylases, gamma subunit compare
Psest_3177 -1.8 -2.7 hypothetical protein compare
Psest_1686 -1.8 -6.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0691 -1.8 -10.6 ribonuclease R compare
Psest_2323 -1.7 -13.1 Uncharacterized protein conserved in archaea compare
Psest_3720 -1.7 -13.9 penicillin-binding protein, 1A family compare
Psest_2719 -1.7 -5.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0414 -1.7 -5.7 biotin biosynthesis protein BioC compare
Psest_2864 -1.7 -5.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3988 -1.7 -8.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2325 -1.7 -9.2 alpha-L-glutamate ligase-related protein compare
Psest_0193 -1.6 -0.8 conserved hypothetical protein compare
Psest_3716 -1.6 -10.3 Tfp pilus assembly protein PilP compare
Psest_3129 -1.6 -2.9 tyrosine recombinase XerD compare
Psest_3700 -1.6 -0.6 hypothetical protein compare
Psest_3719 -1.6 -10.4 type IV pilus assembly protein PilM compare
Psest_0138 -1.6 -10.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1496 -1.6 -2.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_2645 -1.6 -6.8 Transcriptional regulator compare
Psest_0136 -1.6 -11.3 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3960 -1.6 -1.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3301 -1.5 -3.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_3323 -1.5 -4.3 ribonuclease, Rne/Rng family compare
Psest_4345 -1.5 -7.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3288 -1.5 -10.4 type IV-A pilus assembly ATPase PilB compare
Psest_0498 -1.5 -2.2 ribosome small subunit-dependent GTPase A compare
Psest_1277 -1.4 -9.6 2-isopropylmalate synthase, yeast type compare
Psest_0137 -1.4 -8.7 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0515 -1.4 -4.5 rare lipoprotein A compare
Psest_1695 -1.4 -4.6 Tfp pilus assembly protein PilZ compare
Psest_3338 -1.4 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4363 -1.4 -8.3 ATPases involved in chromosome partitioning compare
Psest_0297 -1.4 -4.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2809 -1.4 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0281 -1.4 -7.0 Dynamin family. compare
Psest_1750 -1.4 -2.7 Protein of unknown function (DUF2802). compare
Psest_1054 -1.3 -5.3 Diaminopimelate decarboxylase compare
Psest_3178 -1.3 -3.7 formyltetrahydrofolate deformylase compare
Psest_2810 -1.3 -5.7 5'/3'-nucleotidase SurE compare
Psest_3718 -1.3 -5.7 Tfp pilus assembly protein PilN compare
Psest_4297 -1.3 -8.0 PAS domain S-box compare
Psest_3715 -1.3 -9.8 type IV pilus secretin (or competence protein) PilQ compare
Psest_0491 -1.2 -8.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0300 -1.2 -6.8 Methyl-accepting chemotaxis protein compare
Psest_0114 -1.2 -2.4 RNA polymerase sigma factor, sigma-70 family compare
Psest_4124 -1.2 -3.2 hypothetical protein compare
Psest_1031 -1.2 -6.9 Uncharacterized protein conserved in bacteria compare
Psest_2848 -1.1 -3.3 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1527 -1.1 -8.1 Na+/proline symporter compare
Psest_0182 -1.1 -4.9 glycine cleavage system H protein compare
Psest_3762 -1.1 -5.2 iron donor protein CyaY compare
Psest_1743 -1.1 -4.4 Chemotaxis protein histidine kinase and related kinases compare
Psest_1506 -1.1 -5.5 queuosine biosynthesis protein QueC compare
Psest_2680 -1.1 -6.5 transcriptional regulator, BolA protein family compare
Psest_1111 -1.1 -3.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0292 -1.1 -2.1 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3645 -1.1 -7.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1183 -1.1 -2.0 hydroxyisourate hydrolase compare
Psest_0212 -1.1 -1.2 exodeoxyribonuclease V, gamma subunit compare
Psest_1065 -1.1 -1.8 hypothetical protein compare
Psest_1749 -1.0 -4.3 Chemotaxis signal transduction protein compare
Psest_0299 -1.0 -3.9 Chemotaxis signal transduction protein compare
Psest_3339 -1.0 -4.8 Signal transduction histidine kinase compare
Psest_3187 -1.0 -5.0 hypothetical protein compare
Psest_4097 -1.0 -6.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3573 -1.0 -4.1 dTDP-4-dehydrorhamnose reductase compare
Psest_1241 -1.0 -5.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_4396 -1.0 -6.5 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_4044 -1.0 -6.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0139 -1.0 -3.5 ABC-type histidine transport system, ATPase component compare
Psest_3710 -1.0 -8.1 glutamate synthase small subunit family protein, proteobacterial compare
Psest_0958 -1.0 -6.0 Oligoketide cyclase/lipid transport protein compare
Psest_2945 -1.0 -2.1 septum site-determining protein MinC compare
Psest_1103 -1.0 -2.6 GTP-binding protein YchF compare
Psest_0045 -1.0 -4.7 hypothetical protein compare
Psest_2240 -1.0 -1.7 hypothetical protein compare
Psest_1447 -0.9 -2.5 Putative threonine efflux protein compare
Psest_2458 -0.9 -1.7 MoxR-like ATPases compare
Psest_0440 -0.9 -3.1 hypothetical protein compare
Psest_1809 -0.9 -6.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2411 -0.9 -3.9 PAS domain S-box compare
Psest_0461 -0.9 -3.5 Glycosyltransferase involved in LPS biosynthesis compare
Psest_1643 -0.9 -0.9 hypothetical protein compare
Psest_0186 -0.9 -3.1 Protein-disulfide isomerase compare
Psest_1679 -0.9 -1.1 ribonuclease, Rne/Rng family compare
Psest_3550 -0.9 -1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0884 -0.9 -5.9 Toxin with endonuclease activity YhaV. compare
Psest_3750 -0.9 -5.0 Predicted signal transduction protein with a C-terminal ATPase domain compare
Psest_0031 -0.9 -0.8 Uncharacterized conserved protein compare
Psest_4250 -0.9 -6.2 hypothetical protein compare
Psest_1888 -0.9 -0.9 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1098 -0.9 -6.0 Restriction endonuclease S subunits compare
Psest_3377 -0.9 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1166 -0.9 -2.5 transcriptional regulator, ArgP family compare
Psest_2114 -0.9 -5.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1975 -0.9 -4.2 Predicted transcriptional regulators compare
Psest_0263 -0.9 -5.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3291 -0.9 -6.0 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1167 -0.9 -0.8 hypothetical protein compare
Psest_0790 -0.8 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_4111 -0.8 -5.7 hypothetical protein compare
Psest_0327 -0.8 -3.7 Transcriptional regulator compare
Psest_3684 -0.8 -5.5 Di- and tricarboxylate transporters compare
Psest_1366 -0.8 -1.3 hypothetical protein compare
Psest_4017 -0.8 -7.7 hypothetical protein compare
Psest_0078 -0.8 -0.8 hypothetical protein compare
Psest_1012 -0.8 -3.5 Signal transduction histidine kinase compare
Psest_0260 -0.8 -1.1 Cell division protein compare
Psest_1771 -0.8 -5.3 hypothetical protein compare
Psest_4350 -0.8 -4.0 Transcriptional regulators of sugar metabolism compare
Psest_0883 -0.8 -5.3 hypothetical protein compare
Psest_0207 -0.8 -1.8 hypothetical protein compare
Psest_2580 -0.8 -3.1 Uncharacterized membrane protein, required for colicin V production compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source Sodium L-Lactate across organisms