Experiment set1H10 for Shewanella oneidensis MR-1
LB with Paraquat dichloride 0.25 mg/ml
Group: stressMedia: LB + Paraquat dichloride (0.25 mg/ml)
Culturing: MR1_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Adam on 8/18/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 647 D3,D4
Specific Phenotypes
For 5 genes in this experiment
For stress Paraquat dichloride in Shewanella oneidensis MR-1
For stress Paraquat dichloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Mannose-sensitive hemagglutinin type 4 pilus | 1 |
| Oxidative stress | 1 |
| Phosphate metabolism | 1 |
| Photorespiration (oxidative C2 cycle) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| superoxide radicals degradation | 2 | 2 | 1 |
| methanol oxidation to formaldehyde IV | 2 | 1 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |