Experiment set1H1 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_1058 +2.6 12.2 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_1601 +2.5 6.4 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2049 +2.4 10.8 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_0296 +2.3 4.5 heat shock protein Hsp20 (RefSeq) compare
Shew_2222 +2.3 1.7 hypothetical protein (RefSeq) compare
Shew_2572 +2.3 11.2 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_0755 +2.3 8.0 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_1341 +2.0 8.6 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_0383 +2.0 9.1 malate dehydrogenase (RefSeq) compare
Shew_0728 +2.0 18.7 dihydroorotase (RefSeq) compare
Shew_1013 +2.0 15.1 aspartate carbamoyltransferase (RefSeq) compare
Shew_3487 pyrE +2.0 12.9 orotate phosphoribosyltransferase (RefSeq) compare
Shew_1298 guaA +1.9 11.8 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_1563 +1.8 10.6 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_2642 +1.8 4.8 flavodoxin (RefSeq) compare
Shew_2000 +1.7 3.5 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_2906 +1.7 2.4 hypothetical protein (RefSeq) compare
Shew_3682 +1.7 12.8 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1224 +1.6 11.0 sodium:dicarboxylate symporter (RefSeq) compare
Shew_2174 +1.6 3.2 fatty acid metabolism regulator (RefSeq) compare
Shew_2409 +1.6 3.5 short chain dehydrogenase (RefSeq) compare
Shew_3598 +1.6 1.3 AsnC family transcriptional regulator (RefSeq) compare
Shew_1602 +1.6 5.9 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_1819 +1.6 4.7 GntR family transcriptional regulator (RefSeq) compare
Shew_3499 +1.6 2.5 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_3660 +1.5 12.3 glutathione reductase (RefSeq) compare
Shew_3681 +1.5 12.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_3122 +1.5 1.2 PepSY-associated TM helix domain-containing protein (RefSeq) compare
Shew_0421 +1.5 1.6 phage shock protein C, PspC (RefSeq) compare
Shew_0738 +1.5 1.3 NTPase (RefSeq) compare
Shew_2838 carB +1.5 8.4 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_2839 +1.5 12.0 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_1202 +1.4 7.5 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1859 +1.4 1.4 carbonate dehydratase (RefSeq) compare
Shew_2667 +1.3 8.0 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2857 +1.3 2.5 LysR family transcriptional regulator (RefSeq) compare
Shew_1810 +1.3 6.0 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_2666 +1.3 6.7 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_3612 +1.3 2.4 general secretion pathway protein K (RefSeq) compare
Shew_1223 +1.3 1.0 hypothetical protein (RefSeq) compare
Shew_2665 +1.3 8.8 beta-ketoacyl synthase (RefSeq) compare
Shew_2668 +1.3 7.6 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_2223 +1.3 1.3 YceI family protein (RefSeq) compare
Shew_3410 +1.3 6.8 permease (RefSeq) compare
Shew_1657 sucC +1.2 1.3 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_3710 tdh +1.2 5.2 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_3500 +1.2 3.2 putative endoribonuclease L-PSP (RefSeq) compare
Shew_2571 +1.2 7.8 propionyl-CoA carboxylase (RefSeq) compare
Shew_3709 +1.2 9.5 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_2837 +1.2 1.2 transcription elongation factor GreA (RefSeq) compare
Shew_1878 +1.1 1.8 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_3430 +1.1 2.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_2416 +1.1 1.4 chorismate synthase (RefSeq) compare
Shew_2664 +1.1 3.1 transcriptional regulator, putative (RefSeq) compare
Shew_0799 +1.1 2.5 MarR family transcriptional regulator (RefSeq) compare
Shew_1531 grxA +1.1 2.6 glutaredoxin 1 (RefSeq) compare
Shew_2907 +1.1 2.3 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_2022 +1.1 0.9 recombination factor protein RarA (RefSeq) compare
Shew_0698 +1.0 4.0 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_2073 +1.0 0.8 lactoylglutathione lyase (RefSeq) compare
Shew_1931 +1.0 1.3 alkylphosphonate utilization operon protein PhnA (RefSeq) compare
Shew_0127 +1.0 4.4 LexA repressor (RefSeq) compare
Shew_2573 +1.0 5.1 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_0401 +1.0 1.5 MSHA biogenesis protein MshP (RefSeq) compare
Shew_1713 +1.0 1.5 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1231 +1.0 1.3 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) compare
Shew_0834 +1.0 0.7 hypothetical protein (RefSeq) compare
Shew_2895 +1.0 4.0 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_3295 +1.0 4.4 AFG1 family ATPase (RefSeq) compare
Shew_1530 +1.0 2.8 porin (RefSeq) compare
Shew_3600 +1.0 4.6 alpha/beta hydrolase fold (RefSeq) compare
Shew_3225 +1.0 4.8 glutathione synthetase (RefSeq) compare
Shew_1281 +1.0 1.4 hypothetical protein (RefSeq) compare
Shew_0534 +1.0 3.0 major facilitator transporter (RefSeq) compare
Shew_3708 +1.0 5.7 TetR family transcriptional regulator (RefSeq) compare
Shew_2458 +0.9 1.0 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_0763 +0.9 7.0 putative PAS/PAC sensor protein (RefSeq) compare
Shew_1705 +0.9 1.1 hypothetical protein (RefSeq) compare
Shew_1662 +0.9 1.0 NAD-dependent deacetylase (RefSeq) compare
Shew_2453 +0.9 1.1 hypothetical protein (RefSeq) compare
Shew_3176 +0.9 0.9 regulatory protein GntR, HTH (RefSeq) compare
Shew_0115 +0.9 1.2 hypothetical protein (RefSeq) compare
Shew_1673 fabG +0.9 1.1 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_3265 +0.9 1.2 CutA1 divalent ion tolerance protein (RefSeq) compare
Shew_1146 +0.9 3.7 hypothetical protein (RefSeq) compare
Shew_1050 +0.9 4.0 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2558 +0.9 2.8 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_2785 +0.9 0.8 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_0343 +0.9 1.2 hypothetical protein (RefSeq) compare
Shew_1942 +0.9 1.8 NADH:flavin oxidoreductase/NADH oxidase (RefSeq) compare
Shew_3377 +0.9 0.7 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_2320 +0.9 5.0 RNA methyltransferase (RefSeq) compare
Shew_3262 +0.8 0.6 hypothetical protein (RefSeq) compare
Shew_1920 +0.8 4.0 alpha/beta hydrolase fold (RefSeq) compare
Shew_1736 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_0661 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_1812 +0.8 3.5 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_1820 prpB +0.8 3.7 2-methylisocitrate lyase (RefSeq) compare
Shew_1646 +0.8 0.8 beta-lactamase domain-containing protein (RefSeq) compare
Shew_2725 +0.8 1.6 ribokinase-like domain-containing protein (RefSeq) compare
Shew_3378 +0.8 1.6 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_3273 +0.8 4.5 hypothetical protein (RefSeq) compare
Shew_1078 +0.8 5.6 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_3063 +0.8 0.9 glycine cleavage system protein H (RefSeq) compare
Shew_2656 +0.8 2.4 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_1044 nhaR +0.8 2.3 transcriptional activator NhaR (RefSeq) compare
Shew_2584 +0.8 3.7 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_3189 +0.8 3.9 hypothetical protein (RefSeq) compare
Shew_3267 +0.8 2.6 sodium/hydrogen exchanger (RefSeq) compare
Shew_0495 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_1300 +0.7 2.7 lytic transglycosylase, catalytic (RefSeq) compare
Shew_3522 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_2102 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_1519 +0.7 1.9 hypothetical protein (RefSeq) compare
Shew_3432 pdhR +0.7 2.5 transcriptional regulator PdhR (RefSeq) compare
Shew_0086 +0.7 6.3 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_1156 +0.7 1.4 hypothetical protein (RefSeq) compare
Shew_1213 +0.7 0.9 RpoD family RNA polymerase sigma factor (RefSeq) compare
Shew_2263 +0.7 1.3 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_1486 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_1227 +0.7 1.3 glutamate--cysteine ligase (RefSeq) compare
Shew_1490 +0.7 0.5 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) compare
Shew_1500 +0.7 1.0 signal transduction protein (RefSeq) compare
Shew_1660 +0.7 0.7 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_3602 +0.7 5.4 O-succinylbenzoate-CoA ligase (RefSeq) compare
Shew_3610 +0.7 0.6 general secretion pathway M protein (RefSeq) compare
Shew_3095 +0.7 3.1 hypothetical protein (RefSeq) compare
Shew_2033 +0.7 1.2 hypothetical protein (RefSeq) compare
Shew_3099 +0.7 0.2 TetR family transcriptional regulator (RefSeq) compare
Shew_1518 +0.7 0.8 hypothetical protein (RefSeq) compare
Shew_0136 +0.7 3.0 stearoyl-CoA 9-desaturase (RefSeq) compare
Shew_0692 +0.7 2.6 hypothetical protein (RefSeq) compare
Shew_2176 +0.7 0.7 disulphide bond formation protein DsbB (RefSeq) compare
Shew_1898 +0.7 0.9 ApbE family lipoprotein (RefSeq) compare
Shew_1287 +0.7 2.4 hypothetical protein (RefSeq) compare
Shew_1278 +0.7 0.5 hypothetical protein (RefSeq) compare
Shew_2918 +0.7 0.6 hypothetical protein (RefSeq) compare
Shew_2900 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_2460 +0.7 2.0 hypothetical protein (RefSeq) compare
Shew_1845 +0.7 2.3 lysine exporter protein LysE/YggA (RefSeq) compare
Shew_2115 +0.7 2.4 lytic transglycosylase, catalytic (RefSeq) compare
Shew_2476 +0.7 0.8 MotA/TolQ/ExbB proton channel (RefSeq) compare
Shew_3513 +0.7 1.2 hypothetical protein (RefSeq) compare
Shew_2243 +0.7 0.9 TraR/DksA family transcriptional regulator (RefSeq) compare
Shew_2402 +0.6 0.5 ABC transporter-related protein (RefSeq) compare
Shew_2103 def +0.6 1.9 peptide deformylase (RefSeq) compare
Shew_1429 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_1407 +0.6 4.3 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1867 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_0827 +0.6 0.7 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_2108 fadE +0.6 2.5 acyl-CoA dehydrogenase (RefSeq) compare
Shew_0450 +0.6 2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_0821 +0.6 0.9 mitomycin resistance protein (RefSeq) compare
Shew_2121 +0.6 1.1 diguanylate cyclase (RefSeq) compare
Shew_1323 +0.6 1.9 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein (RefSeq) compare
Shew_1092 +0.6 3.7 amino acid carrier protein (RefSeq) compare
Shew_1831 +0.6 0.6 hypothetical protein (RefSeq) compare
Shew_3521 +0.6 3.8 tryptophan halogenase (RefSeq) compare
Shew_1186 +0.6 2.8 transcriptional regulator NrdR (RefSeq) compare
Shew_2464 +0.6 1.9 hypothetical protein (RefSeq) compare
Shew_2579 +0.6 1.7 thymidine kinase (RefSeq) compare
Shew_0026 +0.6 1.8 hypothetical protein (RefSeq) compare
Shew_2151 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_0842 +0.6 1.7 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_2730 +0.6 0.9 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_2775 +0.6 1.6 MATE efflux family protein (RefSeq) compare
Shew_3718 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_1594 +0.6 1.3 RluA family pseudouridine synthase (RefSeq) compare
Shew_3599 +0.6 4.4 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq) compare
Shew_2795 +0.6 3.6 xanthine/uracil/vitamin C permease (RefSeq) compare
Shew_1266 +0.6 0.6 XRE family transcriptional regulator (RefSeq) compare
Shew_0390 +0.6 0.6 MSHA biogenesis protein MshM (RefSeq) compare
Shew_0485 +0.6 0.9 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Shew_3389 +0.6 0.6 hypothetical protein (RefSeq) compare
Shew_1176 +0.6 1.7 SecC motif-containing protein (RefSeq) compare
Shew_0316 +0.6 2.0 protein of unknown function DUF513, hemX (RefSeq) compare
Shew_1683 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_2606 +0.6 1.5 ABC transporter-related protein (RefSeq) compare
Shew_2763 +0.6 1.0 dienelactone hydrolase (RefSeq) compare
Shew_3431 aceE +0.6 3.6 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_3677 +0.6 3.8 isochorismate synthase (RefSeq) compare
Shew_2799 torD +0.6 1.5 chaperone protein TorD (RefSeq) compare
Shew_0672 +0.6 0.8 uroporphyrin-III C-methyltransferase (RefSeq) compare
Shew_3268 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_1665 +0.5 0.6 peptidase S51, dipeptidase E (RefSeq) compare
Shew_0604 +0.5 2.5 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_3690 +0.5 2.7 formamidopyrimidine-DNA glycosylase (RefSeq) compare
Shew_0706 +0.5 1.8 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1483 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_3049 +0.5 0.9 major facilitator transporter (RefSeq) compare
Shew_2099 +0.5 1.5 DTW domain-containing protein (RefSeq) compare
Shew_3601 +0.5 3.4 O-succinylbenzoate synthase (RefSeq) compare
Shew_0643 +0.5 1.8 type II secretion system protein (RefSeq) compare
Shew_2354 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_1865 +0.5 1.9 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_0641 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_0206 +0.5 3.1 argininosuccinate lyase (RefSeq) compare
Shew_1717 +0.5 1.0 globin (RefSeq) compare
Shew_1932 cls +0.5 2.1 cardiolipin synthetase (RefSeq) compare
Shew_2294 +0.5 1.9 hypothetical protein (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments