+ diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
| Pathway | #Steps | #Present | #Specific |
|---|
| hydroxymethylpyrimidine salvage | 2 | 2 | 2 |
| long-chain fatty acid activation | 1 | 1 | 1 |
| L-alanine biosynthesis II | 1 | 1 | 1 |
| L-alanine degradation III | 1 | 1 | 1 |
| 3-(4-hydroxyphenyl)pyruvate biosynthesis | 1 | 1 | 1 |
| L-aspartate degradation I | 1 | 1 | 1 |
| L-aspartate biosynthesis | 1 | 1 | 1 |
| L-phenylalanine biosynthesis I | 3 | 3 | 2 |
| thiamine diphosphate salvage II | 5 | 4 | 3 |
| superpathway of L-alanine biosynthesis | 4 | 4 | 2 |
| L-glutamate degradation II | 2 | 2 | 1 |
| L-alanine biosynthesis I | 2 | 2 | 1 |
| 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I | 2 | 2 | 1 |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 2 | 2 | 1 |
| N-acetylneuraminate and N-acetylmannosamine degradation I | 4 | 2 | 2 |
| trehalose degradation II (cytosolic) | 2 | 1 | 1 |
| trehalose degradation I (low osmolarity) | 2 | 1 | 1 |
| L-tryptophan degradation IV (via indole-3-lactate) | 2 | 1 | 1 |
| L-alanine degradation V (oxidative Stickland reaction) | 2 | 1 | 1 |
| malate/L-aspartate shuttle pathway | 2 | 1 | 1 |
| atromentin biosynthesis | 2 | 1 | 1 |
| γ-linolenate biosynthesis II (animals) | 2 | 1 | 1 |
| L-tyrosine degradation II | 2 | 1 | 1 |
| linoleate biosynthesis II (animals) | 2 | 1 | 1 |
| thiamine diphosphate salvage IV (yeast) | 7 | 6 | 3 |
| thiamine diphosphate formation from pyrithiamine and oxythiamine (yeast) | 8 | 5 | 3 |
| C4 photosynthetic carbon assimilation cycle, NAD-ME type | 11 | 6 | 4 |
| trehalose degradation IV | 3 | 3 | 1 |
| L-tyrosine biosynthesis I | 3 | 3 | 1 |
| superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation | 6 | 4 | 2 |
| trehalose degradation V | 3 | 2 | 1 |
| thiamine diphosphate salvage V | 3 | 2 | 1 |
| GDP-α-D-glucose biosynthesis | 3 | 2 | 1 |
| 3-methyl-branched fatty acid α-oxidation | 6 | 3 | 2 |
| L-phenylalanine degradation II (anaerobic) | 3 | 1 | 1 |
| (R)-cysteate degradation | 3 | 1 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 1 | 1 |
| oleate biosynthesis I (plants) | 3 | 1 | 1 |
| L-tyrosine degradation IV (to 4-methylphenol) | 3 | 1 | 1 |
| pyruvate fermentation to acetate and alanine | 3 | 1 | 1 |
| alkane biosynthesis II | 3 | 1 | 1 |
| L-alanine degradation II (to D-lactate) | 3 | 1 | 1 |
| sulfolactate degradation III | 3 | 1 | 1 |
| indole-3-acetate biosynthesis VI (bacteria) | 3 | 1 | 1 |
| anaerobic energy metabolism (invertebrates, cytosol) | 7 | 4 | 2 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 6 | 4 |
| sucrose degradation III (sucrose invertase) | 4 | 4 | 1 |
| phytol degradation | 4 | 3 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 2 | 1 |
| L-tyrosine degradation III | 4 | 2 | 1 |
| L-phenylalanine degradation III | 4 | 2 | 1 |
| phosphatidylcholine acyl editing | 4 | 1 | 1 |
| wax esters biosynthesis II | 4 | 1 | 1 |
| long chain fatty acid ester synthesis (engineered) | 4 | 1 | 1 |
| L-tryptophan degradation VIII (to tryptophol) | 4 | 1 | 1 |
| sporopollenin precursors biosynthesis | 18 | 4 | 4 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 2 |
| glucose and glucose-1-phosphate degradation | 5 | 3 | 1 |
| sphingosine and sphingosine-1-phosphate metabolism | 10 | 4 | 2 |
| CMP-N-acetylneuraminate biosynthesis I (eukaryotes) | 5 | 2 | 1 |
| octane oxidation | 5 | 2 | 1 |
| trans-4-hydroxy-L-proline degradation I | 5 | 2 | 1 |
| L-tryptophan degradation XIII (reductive Stickland reaction) | 5 | 1 | 1 |
| L-tyrosine degradation V (reductive Stickland reaction) | 5 | 1 | 1 |
| superpathway of plastoquinol biosynthesis | 5 | 1 | 1 |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 5 | 1 | 1 |
| L-phenylalanine degradation VI (reductive Stickland reaction) | 5 | 1 | 1 |
| L-tyrosine degradation I | 5 | 1 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 3 |
| superpathway of L-threonine biosynthesis | 6 | 6 | 1 |
| UDP-N-acetyl-D-glucosamine biosynthesis II | 6 | 4 | 1 |
| glycogen degradation II | 6 | 4 | 1 |
| stearate biosynthesis II (bacteria and plants) | 6 | 4 | 1 |
| stearate biosynthesis IV | 6 | 3 | 1 |
| TCA cycle VIII (Chlamydia) | 6 | 2 | 1 |
| superpathway of sulfolactate degradation | 6 | 2 | 1 |
| coenzyme M biosynthesis II | 6 | 1 | 1 |
| fatty acid salvage | 6 | 1 | 1 |
| 6-gingerol analog biosynthesis (engineered) | 6 | 1 | 1 |
| L-alanine degradation VI (reductive Stickland reaction) | 6 | 1 | 1 |
| stearate biosynthesis I (animals) | 6 | 1 | 1 |
| UDP-N-acetyl-D-galactosamine biosynthesis II | 7 | 5 | 1 |
| superpathway of thiamine diphosphate biosynthesis III (eukaryotes) | 7 | 4 | 1 |
| ceramide degradation by α-oxidation | 7 | 2 | 1 |
| icosapentaenoate biosynthesis III (8-desaturase, mammals) | 7 | 1 | 1 |
| capsaicin biosynthesis | 7 | 1 | 1 |
| icosapentaenoate biosynthesis II (6-desaturase, mammals) | 7 | 1 | 1 |
| arachidonate biosynthesis III (6-desaturase, mammals) | 7 | 1 | 1 |
| glycogen degradation I | 8 | 7 | 1 |
| sucrose biosynthesis II | 8 | 6 | 1 |
| 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II | 8 | 3 | 1 |
| ceramide and sphingolipid recycling and degradation (yeast) | 16 | 4 | 2 |
| 2-deoxy-D-ribose degradation II | 8 | 2 | 1 |
| superpathway of anaerobic energy metabolism (invertebrates) | 17 | 6 | 2 |
| superpathway of L-methionine biosynthesis (transsulfuration) | 9 | 7 | 1 |
| chitin biosynthesis | 9 | 5 | 1 |
| 1,3-propanediol biosynthesis (engineered) | 9 | 4 | 1 |
| superpathway of L-alanine fermentation (Stickland reaction) | 9 | 3 | 1 |
| L-phenylalanine degradation IV (mammalian, via side chain) | 9 | 1 | 1 |
| superpathway of L-tyrosine biosynthesis | 10 | 10 | 1 |
| superpathway of thiamine diphosphate biosynthesis I | 10 | 6 | 1 |
| suberin monomers biosynthesis | 20 | 2 | 2 |
| rosmarinic acid biosynthesis I | 10 | 1 | 1 |
| superpathway of fatty acid biosynthesis II (plant) | 43 | 29 | 4 |
| glycolysis III (from glucose) | 11 | 10 | 1 |
| superpathway of N-acetylneuraminate degradation | 22 | 17 | 2 |
| superpathway of thiamine diphosphate biosynthesis II | 11 | 7 | 1 |
| (S)-reticuline biosynthesis I | 11 | 1 | 1 |
| homolactic fermentation | 12 | 11 | 1 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 6 | 1 |
| indole-3-acetate biosynthesis II | 12 | 2 | 1 |
| superpathway of L-isoleucine biosynthesis I | 13 | 13 | 1 |
| superpathway of rosmarinic acid biosynthesis | 14 | 1 | 1 |
| Bifidobacterium shunt | 15 | 15 | 1 |
| superpathway of CMP-sialic acids biosynthesis | 15 | 2 | 1 |
| palmitate biosynthesis II (type II fatty acid synthase) | 31 | 22 | 2 |
| cutin biosynthesis | 16 | 1 | 1 |
| heterolactic fermentation | 18 | 16 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 16 | 1 |
| superpathway of chorismate metabolism | 59 | 32 | 3 |
| aspartate superpathway | 25 | 23 | 1 |
| superpathway of fatty acids biosynthesis (E. coli) | 53 | 35 | 2 |
| anaerobic aromatic compound degradation (Thauera aromatica) | 27 | 1 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 16 | 2 |
| palmitate biosynthesis III | 29 | 14 | 1 |
| oleate β-oxidation | 35 | 1 | 1 |