Experiment set19IT091 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Sodium nitrate (N); with TAPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS15410 +3.1 5.0 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS10765 +2.9 21.9 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS21795 +1.9 17.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29810 +1.6 10.9 LysR family transcriptional regulator compare
PFLU_RS18410 +1.6 7.6 response regulator compare
PFLU_RS00460 +1.4 10.4 glutamate/aspartate:proton symporter GltP compare
PFLU_RS14715 +1.4 8.8 protein-glutamate O-methyltransferase CheR compare
PFLU_RS02775 +1.3 2.4 urease accessory protein UreF compare
PFLU_RS25955 +1.3 2.4 hypothetical protein compare
PFLU_RS23195 +1.2 9.7 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS16310 +1.1 2.9 hypothetical protein compare
PFLU_RS21755 +1.1 6.2 flagella biosynthesis chaperone FliJ compare
PFLU_RS31805 +1.1 1.1 hypothetical protein compare
PFLU_RS21850 +1.0 8.6 flagellar basal body L-ring protein FlgH compare
PFLU_RS21855 +1.0 6.7 flagellar basal-body rod protein FlgG compare
PFLU_RS23175 +1.0 6.6 flagellar basal body rod protein FlgC compare
PFLU_RS23595 +1.0 8.2 LacI family DNA-binding transcriptional regulator compare
PFLU_RS21765 +1.0 5.7 flagellar assembly protein FliH compare
PFLU_RS31310 +1.0 2.2 phage tail protein compare
PFLU_RS14305 +1.0 1.7 sensor histidine kinase compare
PFLU_RS11885 +1.0 1.9 type II secretion system protein M compare
PFLU_RS25865 +1.0 2.5 YhbY family RNA-binding protein compare
PFLU_RS21705 +0.9 5.7 flagellar biosynthesis protein FliQ compare
PFLU_RS29780 +0.9 4.9 acyl-CoA thioesterase compare
PFLU_RS21695 +0.9 6.0 flagellar biosynthesis protein FlhB compare
PFLU_RS22640 +0.9 7.2 PLP-dependent aminotransferase family protein compare
PFLU_RS21760 +0.9 6.9 flagellar protein export ATPase FliI compare
PFLU_RS21860 +0.9 5.1 flagellar basal body rod protein FlgF compare
PFLU_RS22600 +0.9 2.2 RNA polymerase sigma factor SigX compare
PFLU_RS23180 +0.9 6.0 flagellar basal body rod protein FlgB compare
PFLU_RS14320 +0.9 2.5 DUF2946 domain-containing protein compare
PFLU_RS25025 +0.9 3.1 hypothetical protein compare
PFLU_RS12740 +0.9 2.8 BcpO-related WXXGXW repeat protein compare
PFLU_RS21675 +0.9 7.5 flagellar biosynthesis protein FlhA compare
PFLU_RS01960 +0.9 1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS21700 +0.9 4.8 flagellar type III secretion system protein FliR compare
PFLU_RS21735 +0.9 6.4 flagellar hook-length control protein FliK compare
PFLU_RS21710 +0.9 5.5 flagellar type III secretion system pore protein FliP compare
PFLU_RS21845 +0.8 4.6 flagellar basal body P-ring protein FlgI compare
PFLU_RS21660 +0.8 6.1 RNA polymerase sigma factor FliA compare
PFLU_RS02180 +0.8 0.9 thioredoxin TrxC compare
PFLU_RS01005 +0.8 1.4 ABC transporter ATP-binding protein compare
PFLU_RS02690 +0.8 1.8 hypothetical protein compare
PFLU_RS05915 +0.8 2.3 diacylglycerol kinase compare
PFLU_RS02510 +0.8 6.2 flagellar motor stator protein MotA compare
PFLU_RS13150 +0.8 2.4 hypothetical protein compare
PFLU_RS11380 +0.8 1.6 sarcosine oxidase subunit delta compare
PFLU_RS08360 +0.8 3.8 hypothetical protein compare
PFLU_RS25210 +0.8 3.3 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS01020 +0.8 1.8 LysR family transcriptional regulator compare
PFLU_RS21775 +0.8 5.7 flagellar basal body M-ring protein FliF compare
PFLU_RS31820 +0.8 2.3 MFS sugar transporter compare
PFLU_RS24340 +0.8 3.2 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS25115 +0.8 2.6 cytochrome c family protein compare
PFLU_RS07520 +0.8 1.1 hypothetical protein compare
PFLU_RS23170 +0.7 3.9 flagellar hook assembly protein FlgD compare
PFLU_RS07695 +0.7 2.2 beta-N-acetylhexosaminidase compare
PFLU_RS21770 +0.7 3.9 flagellar motor switch protein FliG compare
PFLU_RS15765 +0.7 1.8 general secretion pathway protein GspK compare
PFLU_RS08180 +0.7 3.0 ketoacyl-ACP synthase III compare
PFLU_RS23730 +0.7 5.8 MurR/RpiR family transcriptional regulator compare
PFLU_RS31420 +0.7 4.0 hypothetical protein compare
PFLU_RS03585 +0.7 1.1 hypothetical protein compare
PFLU_RS31530 +0.7 1.0 transposase compare
PFLU_RS21840 +0.7 5.2 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS03395 +0.7 3.4 ribosomal-protein-alanine N-acetyltransferase compare
PFLU_RS19550 +0.7 0.8 ABC transporter ATP-binding protein compare
PFLU_RS02515 +0.7 2.8 flagellar motor protein MotB compare
PFLU_RS24680 +0.7 2.2 NIF3 1 compare
PFLU_RS31645 +0.7 1.8 hypothetical protein compare
PFLU_RS23205 +0.7 4.5 flagellar protein FlgN compare
PFLU_RS14040 +0.7 2.1 phage tail protein compare
PFLU_RS08205 +0.7 4.4 GntR family transcriptional regulator compare
PFLU_RS23165 +0.7 6.0 flagellar hook protein FlgE compare
PFLU_RS23235 +0.7 1.2 Arc family DNA-binding protein compare
PFLU_RS00310 +0.7 1.0 twin transmembrane helix small protein compare
PFLU_RS00445 +0.7 2.1 hypothetical protein compare
PFLU_RS16285 +0.7 2.5 hypothetical protein compare
PFLU_RS21830 +0.6 5.7 flagellar hook-associated protein 3 compare
PFLU_RS03305 +0.6 2.0 YigZ family protein compare
PFLU_RS30670 +0.6 2.1 DUF4102 domain-containing protein compare
PFLU_RS30650 +0.6 2.8 DNA-binding protein compare
PFLU_RS17175 +0.6 3.3 hypothetical protein compare
PFLU_RS14560 +0.6 2.5 DNA-binding protein compare
PFLU_RS21610 +0.6 3.6 DUF2802 domain-containing protein compare
PFLU_RS06810 +0.6 3.5 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS06800 +0.6 3.5 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS29485 +0.6 1.6 DUF4870 domain-containing protein compare
PFLU_RS18600 +0.6 2.8 GNAT family N-acetyltransferase compare
PFLU_RS11015 +0.6 2.3 UTRA domain-containing protein compare
PFLU_RS14125 +0.6 1.4 lysozyme compare
PFLU_RS00040 +0.6 4.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS26525 +0.6 5.6 hybrid sensor histidine kinase/response regulator compare
PFLU_RS20690 +0.6 1.9 hypothetical protein compare
PFLU_RS04200 +0.6 4.9 cytochrome bc complex cytochrome b subunit compare
PFLU_RS20025 +0.6 1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS00790 +0.6 1.2 hypothetical protein compare
PFLU_RS17060 +0.6 1.1 monooxygenase compare
PFLU_RS19120 +0.6 1.4 MarR family transcriptional regulator compare
PFLU_RS04595 +0.6 5.1 DUF1329 domain-containing protein compare
PFLU_RS11830 +0.6 1.8 hypothetical protein compare
PFLU_RS29360 +0.6 0.7 cytochrome c5 family protein compare
PFLU_RS00405 +0.6 2.5 cytochrome c5 family protein compare
PFLU_RS21910 +0.6 4.9 BamA/TamA family outer membrane protein compare
PFLU_RS16865 +0.6 1.5 hypothetical protein compare
PFLU_RS12550 +0.6 2.8 aldo/keto reductase compare
PFLU_RS08980 +0.6 4.7 branched-chain amino acid transport system II carrier protein compare
PFLU_RS30645 +0.6 1.3 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS02575 +0.6 4.1 GTPase HflX compare
PFLU_RS21780 +0.6 2.1 flagellar hook-basal body complex protein FliE compare
PFLU_RS21835 +0.5 4.7 flagellar hook-associated protein FlgK compare
PFLU_RS10885 +0.5 2.6 LLM class flavin-dependent oxidoreductase compare
PFLU_RS00410 +0.5 4.0 cytochrome c4 compare
PFLU_RS31440 +0.5 0.7 hypothetical protein compare
PFLU_RS16895 +0.5 2.2 thioesterase compare
PFLU_RS24175 +0.5 2.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS21110 +0.5 1.2 AAA family ATPase compare
PFLU_RS11685 +0.5 1.7 AraC family transcriptional regulator compare
PFLU_RS22665 +0.5 1.3 alanyl-tRNA editing protein compare
PFLU_RS18000 +0.5 1.1 AhpC/TSA family protein compare
PFLU_RS04195 +0.5 2.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS17695 +0.5 1.8 hypothetical protein compare
PFLU_RS19470 +0.5 2.5 ABC transporter ATP-binding protein compare
PFLU_RS21330 +0.5 1.8 hypothetical protein compare
PFLU_RS12375 +0.5 1.9 hypothetical protein compare
PFLU_RS30865 +0.5 1.4 transposase compare
PFLU_RS15020 +0.5 2.5 helix-turn-helix domain-containing protein compare
PFLU_RS05040 +0.5 2.6 DUF1120 domain-containing protein compare
PFLU_RS09535 +0.5 0.9 TIGR03750 family conjugal transfer protein compare
PFLU_RS08185 +0.5 3.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS09245 +0.5 2.7 quaternary ammonium compound efflux SMR transporter SugE compare
PFLU_RS04395 +0.5 2.8 ribosome-associated translation inhibitor RaiA compare
PFLU_RS22380 +0.5 3.1 sulfite exporter TauE/SafE family protein compare
PFLU_RS31465 +0.5 2.9 hypothetical protein compare
PFLU_RS06745 +0.5 1.9 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS24020 +0.5 2.3 RDD family protein compare
PFLU_RS06165 +0.5 2.4 hypothetical protein compare
PFLU_RS21825 +0.5 3.7 ketoacyl-ACP synthase III compare
PFLU_RS19240 +0.5 1.5 Zn-dependent hydrolase compare
PFLU_RS21810 +0.5 4.4 flagellar filament capping protein FliD compare
PFLU_RS30345 +0.5 1.2 DUF2559 family protein compare
PFLU_RS05720 +0.5 3.9 OmpA family protein compare
PFLU_RS30900 +0.5 0.8 hypothetical protein compare
PFLU_RS03995 +0.5 0.8 hypothetical protein compare
PFLU_RS08060 +0.5 1.6 YciK family oxidoreductase compare
PFLU_RS22370 +0.5 3.7 cadmium-translocating P-type ATPase compare
PFLU_RS13350 +0.5 0.7 ParD-like family protein compare
PFLU_RS04205 +0.5 3.8 cytochrome c1 compare
PFLU_RS18125 +0.5 1.6 ABC transporter ATP-binding protein compare
PFLU_RS03790 +0.5 2.1 peptidylprolyl isomerase compare
PFLU_RS16975 +0.5 2.1 hypothetical protein compare
PFLU_RS11415 +0.5 1.0 protein glxC compare
PFLU_RS17615 +0.5 1.1 DeoR/GlpR transcriptional regulator compare
PFLU_RS25290 +0.5 1.5 hypothetical protein compare
PFLU_RS28075 +0.5 2.7 lysozyme inhibitor compare
PFLU_RS28080 +0.5 1.3 hypothetical protein compare
PFLU_RS11000 +0.5 2.2 cysteine dioxygenase compare
PFLU_RS05050 +0.5 0.7 response regulator transcription factor compare
PFLU_RS06855 +0.5 1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS30030 +0.5 0.6 membrane protein compare
PFLU_RS15795 +0.5 0.8 hypothetical protein compare
PFLU_RS06630 +0.5 1.4 ABC transporter ATP-binding protein compare
PFLU_RS01860 +0.5 1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS15570 +0.5 1.8 FAD-binding protein compare
PFLU_RS19070 +0.5 1.6 LysR family transcriptional regulator compare
PFLU_RS18680 +0.5 1.6 toxin compare
PFLU_RS16445 +0.5 1.7 PIG-L family deacetylase compare
PFLU_RS29105 +0.5 3.5 DedA family protein compare
PFLU_RS20400 +0.5 1.9 hypothetical protein compare
PFLU_RS20870 +0.5 1.4 hypothetical protein compare
PFLU_RS13580 +0.5 1.4 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS13950 +0.5 1.4 hypothetical protein compare
PFLU_RS02555 +0.5 2.1 AMIN domain-containing protein compare
PFLU_RS00060 +0.5 1.1 DNA-3-methyladenine glycosylase I compare
PFLU_RS20765 +0.5 1.0 hypothetical protein compare
PFLU_RS12615 +0.4 1.2 oxidoreductase compare
PFLU_RS05795 +0.4 2.0 phage baseplate assembly protein V compare
PFLU_RS19875 +0.4 1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24945 +0.4 2.4 DUF4435 domain-containing protein compare
PFLU_RS16450 +0.4 1.7 methyltransferase domain-containing protein compare
PFLU_RS23350 +0.4 3.0 ABC transporter substrate-binding protein compare
PFLU_RS19670 +0.4 2.6 nitrogen assimilation transcriptional regulator compare
PFLU_RS08685 +0.4 2.6 c-type cytochrome biogenesis protein CcmI compare
PFLU_RS23885 +0.4 1.6 transposase compare
PFLU_RS08990 +0.4 1.2 hypothetical protein compare
PFLU_RS05210 +0.4 1.6 HU family DNA-binding protein compare
PFLU_RS04415 +0.4 1.0 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS14980 +0.4 1.9 RidA family protein compare
PFLU_RS12675 +0.4 1.6 DUF2946 domain-containing protein compare
PFLU_RS04590 +0.4 3.9 DUF1302 domain-containing protein compare
PFLU_RS21725 +0.4 2.4 flagellar motor switch protein FliM compare
PFLU_RS15165 +0.4 1.0 RidA family protein compare
PFLU_RS31335 +0.4 2.0 hypothetical protein compare
PFLU_RS05475 +0.4 2.7 amino acid permease compare
PFLU_RS04485 +0.4 2.9 uracil phosphoribosyltransferase compare
PFLU_RS05345 +0.4 1.0 hypothetical protein compare
PFLU_RS17825 +0.4 2.2 winged helix family transcriptional regulator compare
PFLU_RS20435 +0.4 1.4 heavy metal response regulator transcription factor compare
PFLU_RS17785 +0.4 2.1 hypothetical protein compare
PFLU_RS20110 +0.4 2.0 Lrp/AsnC family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For no stress control D-Glucose in Pseudomonas fluorescens SBW25-INTG

For no stress control D-Glucose across organisms