Experiment set19IT076 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Ammonium chloride (N); with MOPS; with PEG

200 most important genes:

  gene name fitness t score description  
PFLU_RS27365 -5.7 -6.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS27370 -5.3 -8.9 anthranilate phosphoribosyltransferase compare
PFLU_RS20540 -5.0 -6.9 phosphoribosylanthranilate isomerase compare
PFLU_RS28535 -4.9 -15.5 dihydroxy-acid dehydratase compare
PFLU_RS28390 -4.8 -12.1 methionine biosynthesis protein MetW compare
PFLU_RS20565 -4.8 -13.2 3-isopropylmalate dehydrogenase compare
PFLU_RS25640 -4.8 -12.8 ketol-acid reductoisomerase compare
PFLU_RS20575 -4.7 -7.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28385 -4.7 -15.4 homoserine O-acetyltransferase compare
PFLU_RS01895 -4.6 -7.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS02590 -4.6 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28165 -4.6 -10.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04465 -4.6 -9.9 ATP phosphoribosyltransferase compare
PFLU_RS20510 -4.6 -13.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS03970 -4.6 -11.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01605 -4.5 -6.2 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS00175 -4.4 -5.2 tryptophan synthase subunit alpha compare
PFLU_RS20580 -4.2 -14.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS01900 -4.2 -7.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28695 -4.2 -10.2 phosphoglycerate dehydrogenase compare
PFLU_RS00180 -4.2 -7.0 tryptophan synthase subunit beta compare
PFLU_RS04470 -4.1 -10.6 histidinol dehydrogenase compare
PFLU_RS01620 -4.1 -7.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25645 -4.0 -2.8 acetolactate synthase small subunit compare
PFLU_RS24765 -3.9 -24.0 2-isopropylmalate synthase compare
PFLU_RS24025 -3.9 -13.8 quinolinate synthase NadA compare
PFLU_RS28655 -3.6 -14.0 HAD family hydrolase compare
PFLU_RS18505 -3.5 -9.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS22105 -3.4 -6.5 cysteine synthase CysM compare
PFLU_RS12980 -3.4 -9.9 nitrite/sulfite reductase compare
PFLU_RS20515 -3.3 -5.0 amidophosphoribosyltransferase compare
PFLU_RS01610 -3.2 -12.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS25360 -3.1 -8.9 glutamate 5-kinase compare
PFLU_RS29515 -3.0 -13.9 RidA family protein compare
PFLU_RS09055 -2.9 -3.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS02490 -2.9 -15.5 phosphoserine phosphatase SerB compare
PFLU_RS29875 -2.9 -17.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS12975 -2.8 -5.3 DUF934 domain-containing protein compare
PFLU_RS29885 -2.8 -12.4 LysR family transcriptional regulator compare
PFLU_RS29880 -2.8 -15.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS18395 -2.7 -2.5 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS22740 -2.7 -2.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS21495 -2.6 -1.8 TlpA family protein disulfide reductase compare
PFLU_RS24330 -2.6 -4.3 phosphogluconate dehydratase compare
PFLU_RS00415 -2.5 -3.3 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS28325 -2.5 -8.4 energy transducer TonB compare
PFLU_RS25735 -2.4 -4.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS22070 -2.4 -4.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS07225 -2.4 -15.1 L-aspartate oxidase compare
PFLU_RS18530 -2.3 -4.9 DNA translocase FtsK compare
PFLU_RS12450 -2.3 -11.0 cyclic peptide export ABC transporter compare
PFLU_RS08185 -2.3 -9.3 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS20290 -2.2 -2.6 integration host factor subunit alpha compare
PFLU_RS02565 -2.2 -4.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS01625 -2.2 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS02370 -2.2 -9.5 glycosyltransferase compare
PFLU_RS25750 -2.1 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS27650 -2.1 -8.9 biotin synthase BioB compare
PFLU_RS08650 -2.1 -2.7 heme exporter protein CcmB compare
PFLU_RS09835 -2.1 -11.6 LysR family transcriptional regulator compare
PFLU_RS12445 -2.0 -12.9 TonB-dependent siderophore receptor compare
PFLU_RS03645 -1.9 -11.2 tetratricopeptide repeat protein compare
PFLU_RS09845 -1.9 -2.9 biotin carboxyl carrier domain-containing protein compare
PFLU_RS27475 -1.9 -5.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS30520 -1.9 -6.5 ketoacyl-ACP synthase III compare
PFLU_RS23585 -1.9 -8.6 GntP family permease compare
PFLU_RS25715 -1.9 -9.0 RNA polymerase-binding protein DksA compare
PFLU_RS01645 -1.8 -11.1 S41 family peptidase compare
PFLU_RS13540 -1.7 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS27640 -1.7 -2.2 alpha/beta fold hydrolase compare
PFLU_RS08160 -1.7 -5.8 sugar transferase compare
PFLU_RS01910 -1.7 -1.9 sterol-binding protein compare
PFLU_RS23310 -1.6 -8.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS08190 -1.6 -11.4 polysaccharide biosynthesis protein compare
PFLU_RS29550 -1.6 -4.7 ATP-dependent DNA helicase RecG compare
PFLU_RS02365 -1.6 -9.2 glycosyltransferase compare
PFLU_RS14550 -1.6 -5.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS26595 -1.6 -2.3 lipoprotein compare
PFLU_RS31310 -1.6 -2.7 phage tail protein compare
PFLU_RS15410 -1.6 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS18665 -1.6 -1.5 NADH-quinone oxidoreductase subunit L compare
PFLU_RS09865 -1.6 -9.0 allantoin permease compare
PFLU_RS27630 -1.6 -4.3 dethiobiotin synthase compare
PFLU_RS24090 -1.5 -2.1 Holliday junction branch migration protein RuvA compare
PFLU_RS28195 -1.5 -8.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS05250 -1.5 -3.5 elongation factor 4 compare
PFLU_RS27635 -1.5 -6.0 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS23380 -1.5 -2.1 HAD-IB family hydrolase compare
PFLU_RS15205 -1.5 -2.9 ribose ABC transporter permease compare
PFLU_RS23920 -1.5 -2.9 septation protein A compare
PFLU_RS28420 -1.5 -7.0 thiazole synthase compare
PFLU_RS30505 -1.5 -4.6 hypothetical protein compare
PFLU_RS19175 -1.5 -6.9 trigger factor compare
PFLU_RS23725 -1.5 -6.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS29290 -1.5 -4.4 hypothetical protein compare
PFLU_RS27645 -1.4 -7.8 8-amino-7-oxononanoate synthase compare
PFLU_RS19170 -1.4 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS23305 -1.4 -8.4 arginine N-succinyltransferase compare
PFLU_RS23070 -1.4 -1.6 50S ribosomal protein L32 compare
PFLU_RS13010 -1.4 -4.1 Fe-S biogenesis protein NfuA compare
PFLU_RS23590 -1.4 -2.5 gluconokinase compare
PFLU_RS14450 -1.3 -2.1 AzlD domain-containing protein compare
PFLU_RS03665 -1.3 -4.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS13035 -1.3 -3.1 cobalamin biosynthesis protein CobW compare
PFLU_RS26535 -1.3 -5.6 thiamine phosphate synthase compare
PFLU_RS25760 -1.3 -5.1 glucose-6-phosphate isomerase compare
PFLU_RS22645 -1.3 -9.4 EamA family transporter compare
PFLU_RS13945 -1.3 -2.6 hypothetical protein compare
PFLU_RS08370 -1.3 -5.0 hypothetical protein compare
PFLU_RS08410 -1.3 -6.4 HTH-type transcriptional regulator CysB compare
PFLU_RS02275 -1.3 -1.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS18885 -1.3 -2.3 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS18675 -1.3 -2.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS30165 -1.2 -6.2 ParA family protein compare
PFLU_RS25190 -1.2 -3.1 hypothetical protein compare
PFLU_RS08505 -1.2 -6.1 protease HtpX compare
PFLU_RS24125 -1.2 -3.4 cold-shock protein compare
PFLU_RS07255 -1.2 -4.3 sulfurtransferase TusA family protein compare
PFLU_RS27375 -1.2 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS01955 -1.2 -5.9 DUF971 domain-containing protein compare
PFLU_RS28315 -1.2 -1.6 response regulator compare
PFLU_RS25730 -1.2 -8.6 PAS domain S-box protein compare
PFLU_RS08660 -1.2 -1.8 heme exporter protein CcmD compare
PFLU_RS30525 -1.2 -6.5 SDR family oxidoreductase compare
PFLU_RS07280 -1.2 -7.5 outer membrane protein assembly factor BamC compare
PFLU_RS20660 -1.2 -7.0 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS28650 -1.2 -4.3 RNA pyrophosphohydrolase compare
PFLU_RS18055 -1.2 -2.3 hydrolase compare
PFLU_RS07525 -1.2 -1.4 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS11770 -1.2 -3.4 type 1 glutamine amidotransferase domain-containing protein compare
PFLU_RS07685 -1.2 -3.2 transcriptional repressor LexA compare
PFLU_RS28645 -1.1 -8.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS20955 -1.1 -2.2 DUF1028 domain-containing protein compare
PFLU_RS03555 -1.1 -1.1 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS18625 -1.1 -3.6 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS19015 -1.1 -6.3 anti-sigma factor compare
PFLU_RS08145 -1.1 -5.4 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS09980 -1.1 -8.8 peptidase S41 compare
PFLU_RS27380 -1.1 -6.6 anthranilate synthase component I compare
PFLU_RS29275 -1.1 -4.5 DUF484 family protein compare
PFLU_RS19555 -1.1 -1.5 histidine phosphatase family protein compare
PFLU_RS22095 -1.1 -8.8 GTP diphosphokinase compare
PFLU_RS18410 -1.1 -4.2 response regulator compare
PFLU_RS03610 -1.1 -3.8 redox-regulated ATPase YchF compare
PFLU_RS20970 -1.1 -1.8 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS28965 -1.1 -6.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS26145 -1.1 -2.1 hypothetical protein compare
PFLU_RS25205 -1.1 -3.5 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS01615 -1.1 -3.5 DUF2164 domain-containing protein compare
PFLU_RS08165 -1.1 -1.7 acyl carrier protein compare
PFLU_RS08670 -1.1 -3.6 heme lyase CcmF/NrfE family subunit compare
PFLU_RS02975 -1.0 -5.8 precorrin-3B synthase compare
PFLU_RS02980 -1.0 -2.0 precorrin-8X methylmutase compare
PFLU_RS25200 -1.0 -4.8 protoheme IX farnesyltransferase compare
PFLU_RS11980 -1.0 -4.9 precorrin-6A synthase (deacetylating) compare
PFLU_RS10765 -1.0 -6.6 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS23235 -1.0 -2.4 Arc family DNA-binding protein compare
PFLU_RS25925 -1.0 -2.4 RnfH family protein compare
PFLU_RS30530 -1.0 -4.7 acetyltransferase compare
PFLU_RS19475 -1.0 -3.4 Zn-dependent hydrolase compare
PFLU_RS15725 -1.0 -4.2 siderophore-iron reductase FhuF compare
PFLU_RS25815 -1.0 -2.1 transcription termination/antitermination protein NusA compare
PFLU_RS22005 -1.0 -6.6 cobyric acid synthase compare
PFLU_RS01670 -1.0 -4.7 protein-export chaperone SecB compare
PFLU_RS29095 -1.0 -9.0 polyphosphate kinase 1 compare
PFLU_RS08675 -1.0 -2.1 DsbE family thiol:disulfide interchange protein compare
PFLU_RS02215 -1.0 -2.5 hypothetical protein compare
PFLU_RS08180 -1.0 -3.0 ketoacyl-ACP synthase III compare
PFLU_RS02970 -1.0 -3.9 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS05630 -1.0 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS18735 -1.0 -1.5 hypothetical protein compare
PFLU_RS29490 -1.0 -5.3 ribonuclease PH compare
PFLU_RS24335 -1.0 -6.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS10430 -0.9 -1.9 peptidase compare
PFLU_RS24485 -0.9 -6.0 hypothetical protein compare
PFLU_RS01285 -0.9 -1.5 HAMP domain-containing protein compare
PFLU_RS08655 -0.9 -2.0 heme ABC transporter permease compare
PFLU_RS15065 -0.9 -3.0 IclR family transcriptional regulator compare
PFLU_RS22725 -0.9 -2.3 transcriptional regulator compare
PFLU_RS19160 -0.9 -5.3 endopeptidase La compare
PFLU_RS00850 -0.9 -2.9 hypothetical protein compare
PFLU_RS31330 -0.9 -3.6 hypothetical protein compare
PFLU_RS26530 -0.9 -6.9 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS23045 -0.9 -2.8 beta-ketoacyl-ACP synthase II compare
PFLU_RS25210 -0.9 -2.8 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS18700 -0.9 -2.2 hypothetical protein compare
PFLU_RS01390 -0.9 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS07665 -0.9 -1.8 type I DNA topoisomerase compare
PFLU_RS21425 -0.9 -3.2 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS29195 -0.9 -3.7 heme biosynthesis protein HemY compare
PFLU_RS03770 -0.9 -6.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS30390 -0.9 -2.6 type III secretion system rspB compare
PFLU_RS13040 -0.9 -6.4 cobaltochelatase subunit CobN compare
PFLU_RS08665 -0.9 -2.1 cytochrome c maturation protein CcmE compare
PFLU_RS25875 -0.8 -2.8 transcription elongation factor GreA compare
PFLU_RS12220 -0.8 -2.4 AraC family transcriptional regulator compare
PFLU_RS23220 -0.8 -1.7 tRNA-Arg compare
PFLU_RS23240 -0.8 -5.0 magnesium transporter compare
PFLU_RS08135 -0.8 -3.2 glycosyltransferase compare
PFLU_RS19165 -0.8 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare


Specific Phenotypes

For 1 genes in this experiment

For stress D-Glucose in Pseudomonas fluorescens SBW25-INTG

For stress D-Glucose across organisms