Experiment set19IT074 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Ammonium chloride (N); with MOPS; with PEG

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS21795 +1.0 9.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS26290 +0.9 1.6 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS31590 +0.9 2.0 hypothetical protein compare
PFLU_RS14320 +0.9 2.4 DUF2946 domain-containing protein compare
PFLU_RS08735 +0.9 1.8 histidine phosphatase family protein compare
PFLU_RS31440 +0.8 1.5 hypothetical protein compare
PFLU_RS22600 +0.8 1.7 RNA polymerase sigma factor SigX compare
PFLU_RS12725 +0.8 2.2 GNAT family N-acetyltransferase compare
PFLU_RS06055 +0.7 1.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS02455 +0.7 1.8 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS00460 +0.7 5.9 glutamate/aspartate:proton symporter GltP compare
PFLU_RS14715 +0.7 5.1 protein-glutamate O-methyltransferase CheR compare
PFLU_RS22470 +0.7 1.3 hypothetical protein compare
PFLU_RS11675 +0.7 3.7 glutathione S-transferase family protein compare
PFLU_RS17265 +0.7 1.5 hypothetical protein compare
PFLU_RS31305 +0.7 3.3 cell wall hydrolase compare
PFLU_RS31275 +0.7 0.8 hypothetical protein compare
PFLU_RS00405 +0.7 3.8 cytochrome c5 family protein compare
PFLU_RS07195 +0.7 2.7 hypothetical protein compare
PFLU_RS14805 +0.7 1.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS11830 +0.6 2.4 hypothetical protein compare
PFLU_RS09480 +0.6 2.3 hypothetical protein compare
PFLU_RS08350 +0.6 1.5 ABC transporter ATP-binding protein compare
PFLU_RS01875 +0.6 1.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS02180 +0.6 1.3 thioredoxin TrxC compare
PFLU_RS14045 +0.6 2.6 hypothetical protein compare
PFLU_RS07910 +0.6 1.5 type 1 fimbrial protein compare
PFLU_RS13715 +0.6 0.7 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS00040 +0.6 5.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS19830 +0.6 2.2 type VI secretion system tube protein Hcp compare
PFLU_RS00535 +0.6 1.7 DUF1127 domain-containing protein compare
PFLU_RS15165 +0.6 1.5 RidA family protein compare
PFLU_RS16530 +0.6 2.5 hypothetical protein compare
PFLU_RS04385 +0.6 4.0 RNase adapter RapZ compare
PFLU_RS26400 +0.6 2.3 HAD family hydrolase compare
PFLU_RS31470 +0.6 2.7 hypothetical protein compare
PFLU_RS20730 +0.6 1.4 hypothetical protein compare
PFLU_RS24295 +0.5 3.2 flavin reductase family protein compare
PFLU_RS31800 +0.5 1.5 hypothetical protein compare
PFLU_RS19495 +0.5 2.0 SDR family oxidoreductase compare
PFLU_RS14545 +0.5 1.6 hypothetical protein compare
PFLU_RS29810 +0.5 4.0 LysR family transcriptional regulator compare
PFLU_RS16450 +0.5 2.3 methyltransferase domain-containing protein compare
PFLU_RS08990 +0.5 1.6 hypothetical protein compare
PFLU_RS24305 +0.5 1.8 antibiotic biosynthesis monooxygenase compare
PFLU_RS21705 +0.5 3.6 flagellar biosynthesis protein FliQ compare
PFLU_RS29400 +0.5 1.7 DUF1127 domain-containing protein compare
PFLU_RS14560 +0.5 2.1 DNA-binding protein compare
PFLU_RS00410 +0.5 4.0 cytochrome c4 compare
PFLU_RS13370 +0.5 1.2 DUF2790 domain-containing protein compare
PFLU_RS24980 +0.5 1.4 purine-binding chemotaxis protein CheW compare
PFLU_RS13150 +0.5 2.0 hypothetical protein compare
PFLU_RS23670 +0.5 2.2 CsbD family protein compare
PFLU_RS28250 +0.5 2.1 malonate decarboxylase holo-ACP synthase compare
PFLU_RS21675 +0.5 4.5 flagellar biosynthesis protein FlhA compare
PFLU_RS07695 +0.5 2.0 beta-N-acetylhexosaminidase compare
PFLU_RS12800 +0.5 1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS19550 +0.5 0.7 ABC transporter ATP-binding protein compare
PFLU_RS25135 +0.5 2.1 hypothetical protein compare
PFLU_RS10695 +0.5 2.4 type II toxin-antitoxin system HicB family antitoxin compare
PFLU_RS17580 +0.5 1.2 repressor LexA compare
PFLU_RS18585 +0.5 0.7 high frequency lysogenization protein HflD compare
PFLU_RS20395 +0.5 3.7 deoxyribonuclease compare
PFLU_RS07760 +0.5 2.1 heavy metal response regulator transcription factor compare
PFLU_RS05020 +0.5 0.9 DUF1120 domain-containing protein compare
PFLU_RS20405 +0.5 2.4 carbon storage regulator CsrA compare
PFLU_RS15180 +0.5 1.6 Lrp/AsnC family transcriptional regulator compare
PFLU_RS22535 +0.5 4.2 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS10705 +0.5 2.1 GNAT family N-acetyltransferase compare
PFLU_RS29555 +0.5 3.8 HDOD domain-containing protein compare
PFLU_RS01005 +0.5 1.1 ABC transporter ATP-binding protein compare
PFLU_RS04415 +0.5 1.2 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS15000 +0.5 1.8 HAMP domain-containing histidine kinase compare
PFLU_RS28735 +0.5 3.2 thiol-disulfide isomerase compare
PFLU_RS25920 +0.5 1.7 outer membrane protein assembly factor BamE compare
PFLU_RS21570 +0.5 1.2 exonuclease compare
PFLU_RS19270 +0.4 2.5 copper homeostasis periplasmic binding protein CopC compare
PFLU_RS03535 +0.4 1.7 YscO family type III secretion system apparatus protein compare
PFLU_RS09550 +0.4 1.6 hypothetical protein compare
PFLU_RS12915 +0.4 1.4 methyltransferase domain-containing protein compare
PFLU_RS23325 +0.4 3.5 GlxA family transcriptional regulator compare
PFLU_RS00310 +0.4 1.0 twin transmembrane helix small protein compare
PFLU_RS17880 +0.4 2.0 WcaI family glycosyltransferase compare
PFLU_RS23195 +0.4 3.7 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS31630 +0.4 1.2 hypothetical protein compare
PFLU_RS27840 +0.4 1.8 hypothetical protein compare
PFLU_RS25575 +0.4 3.3 diguanylate cyclase compare
PFLU_RS13525 +0.4 2.1 NAD(P)H-dependent oxidoreductase compare
PFLU_RS13225 +0.4 1.8 hypothetical protein compare
PFLU_RS19325 +0.4 2.5 DASS family sodium-coupled anion symporter compare
PFLU_RS12455 +0.4 2.6 N(5)-hydroxyornithine transformylase PvdF compare
PFLU_RS21610 +0.4 2.6 DUF2802 domain-containing protein compare
PFLU_RS03585 +0.4 0.9 hypothetical protein compare
PFLU_RS13205 +0.4 1.3 DUF883 family protein compare
PFLU_RS20690 +0.4 1.4 hypothetical protein compare
PFLU_RS19590 +0.4 1.8 pyridoxamine 5'-phosphate oxidase compare
PFLU_RS14335 +0.4 0.9 ABC transporter permease compare
PFLU_RS13120 +0.4 0.9 hypothetical protein compare
PFLU_RS13750 +0.4 1.1 hypothetical protein compare
PFLU_RS22250 +0.4 1.1 hypothetical protein compare
PFLU_RS17270 +0.4 2.7 serine/threonine protein kinase compare
PFLU_RS14125 +0.4 1.5 lysozyme compare
PFLU_RS29950 +0.4 2.3 GTP-binding protein compare
PFLU_RS31780 +0.4 1.5 hypothetical protein compare
PFLU_RS11900 +0.4 1.3 type II secretion system protein GspF compare
PFLU_RS05105 +0.4 1.5 tetratricopeptide repeat protein compare
PFLU_RS10595 +0.4 1.4 hypothetical protein compare
PFLU_RS00435 +0.4 3.6 PAS domain-containing protein compare
PFLU_RS24825 +0.4 1.3 Fe-S cluster assembly protein IscX compare
PFLU_RS03450 +0.4 2.1 gluconate transporter compare
PFLU_RS27300 +0.4 3.6 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS30890 +0.4 2.2 hypothetical protein compare
PFLU_RS18040 +0.4 1.8 GGDEF domain-containing protein compare
PFLU_RS02095 +0.4 2.0 hypothetical protein compare
PFLU_RS11965 +0.4 1.9 LysR family transcriptional regulator compare
PFLU_RS21910 +0.4 3.6 BamA/TamA family outer membrane protein compare
PFLU_RS16935 +0.4 1.2 CoA ester lyase compare
PFLU_RS19605 +0.4 2.1 aldo/keto reductase compare
PFLU_RS08360 +0.4 1.9 hypothetical protein compare
PFLU_RS13350 +0.4 0.9 ParD-like family protein compare
PFLU_RS00170 +0.4 2.7 RcnB family protein compare
PFLU_RS20920 +0.4 1.6 FadR family transcriptional regulator compare
PFLU_RS26580 +0.4 2.0 YdcF family protein compare
PFLU_RS17425 +0.4 1.6 ABC transporter ATP-binding protein compare
PFLU_RS14525 +0.4 2.0 c-type cytochrome compare
PFLU_RS11790 +0.4 1.8 zinc-binding dehydrogenase compare
PFLU_RS26145 +0.4 1.2 hypothetical protein compare
PFLU_RS10630 +0.4 2.2 LysR family transcriptional regulator compare
PFLU_RS21765 +0.4 2.5 flagellar assembly protein FliH compare
PFLU_RS21700 +0.4 2.6 flagellar type III secretion system protein FliR compare
PFLU_RS12205 +0.4 1.4 DNA binding protein compare
PFLU_RS22190 +0.4 0.8 hypothetical protein compare
PFLU_RS13535 +0.4 1.9 hypothetical protein compare
PFLU_RS16300 +0.4 1.3 hypothetical protein compare
PFLU_RS23265 +0.4 2.4 aspartate kinase compare
PFLU_RS13765 +0.4 1.0 hypothetical protein compare
PFLU_RS21360 +0.4 0.9 MarR family transcriptional regulator compare
PFLU_RS21240 +0.4 0.9 hypothetical protein compare
PFLU_RS30615 +0.4 1.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS15250 +0.4 2.2 HAMP domain-containing protein compare
PFLU_RS06810 +0.4 2.3 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS22195 +0.4 1.3 DEAD/DEAH box helicase compare
PFLU_RS30710 +0.4 1.9 GNAT family N-acetyltransferase compare
PFLU_RS26955 +0.4 2.9 sugar nucleotide-binding protein compare
PFLU_RS25120 +0.4 1.1 response regulator compare
PFLU_RS04205 +0.4 2.7 cytochrome c1 compare
PFLU_RS23350 +0.4 2.8 ABC transporter substrate-binding protein compare
PFLU_RS20435 +0.4 1.1 heavy metal response regulator transcription factor compare
PFLU_RS12745 +0.4 1.8 RNA polymerase sigma factor compare
PFLU_RS09135 +0.4 2.4 alpha/beta fold hydrolase compare
PFLU_RS17075 +0.4 2.1 C4-dicarboxylate transporter DctA compare
PFLU_RS10045 +0.4 1.3 hypothetical protein compare
PFLU_RS08695 +0.4 1.8 DUF3077 domain-containing protein compare
PFLU_RS04200 +0.4 3.1 cytochrome bc complex cytochrome b subunit compare
PFLU_RS23175 +0.4 2.4 flagellar basal body rod protein FlgC compare
PFLU_RS16105 +0.4 1.9 SDR family oxidoreductase compare
PFLU_RS16600 +0.4 1.7 VOC family protein compare
PFLU_RS15115 +0.4 2.0 cytochrome b compare
PFLU_RS12840 +0.4 1.3 3-hydroxybutyrate dehydrogenase compare
PFLU_RS12805 +0.4 1.5 RidA family protein compare
PFLU_RS17395 +0.4 1.8 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS17370 +0.3 1.5 hypothetical protein compare
PFLU_RS05040 +0.3 1.9 DUF1120 domain-containing protein compare
PFLU_RS18350 +0.3 1.1 GIY-YIG nuclease family protein compare
PFLU_RS01860 +0.3 1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS11015 +0.3 1.6 UTRA domain-containing protein compare
PFLU_RS28320 +0.3 1.0 glutathione synthase compare
PFLU_RS14495 +0.3 2.6 alpha/beta hydrolase compare
PFLU_RS21655 +0.3 2.1 response regulator compare
PFLU_RS07485 +0.3 2.0 YcgN family cysteine cluster protein compare
PFLU_RS11945 +0.3 1.3 hypothetical protein compare
PFLU_RS29485 +0.3 1.4 DUF4870 domain-containing protein compare
PFLU_RS20015 +0.3 0.8 transporter compare
PFLU_RS11340 +0.3 1.8 RraA family protein compare
PFLU_RS31535 +0.3 0.6 hypothetical protein compare
PFLU_RS08495 +0.3 1.8 dioxygenase compare
PFLU_RS02700 +0.3 1.5 ammonia-dependent NAD(+) synthetase compare
PFLU_RS14450 +0.3 0.9 AzlD domain-containing protein compare
PFLU_RS22995 +0.3 2.1 GntR family transcriptional regulator compare
PFLU_RS18370 +0.3 2.0 low molecular weight phosphotyrosine protein phosphatase compare
PFLU_RS12820 +0.3 2.2 sugar kinase compare
PFLU_RS30725 +0.3 1.2 DUF1652 domain-containing protein compare
PFLU_RS25580 +0.3 1.7 YfiR family protein compare
PFLU_RS20990 +0.3 1.5 zinc-binding dehydrogenase compare
PFLU_RS31045 +0.3 2.3 ribosome modulation factor compare
PFLU_RS14420 +0.3 1.2 chemotactic transduction protein ChpE compare
PFLU_RS17905 +0.3 1.5 glycosyltransferase compare
PFLU_RS13215 +0.3 1.0 LysR family transcriptional regulator compare
PFLU_RS12860 +0.3 2.0 ABC transporter permease compare
PFLU_RS28960 +0.3 2.0 cell division protein ZapA compare
PFLU_RS24300 +0.3 1.2 hypothetical protein compare
PFLU_RS20525 +0.3 1.9 cell division protein compare
PFLU_RS28785 +0.3 2.3 glutamine synthetase compare
PFLU_RS26710 +0.3 2.0 MaoC family dehydratase compare
PFLU_RS22450 +0.3 1.9 LysR family transcriptional regulator compare
PFLU_RS20045 +0.3 1.5 hypothetical protein compare
PFLU_RS21820 +0.3 2.5 flagellin compare
PFLU_RS11380 +0.3 0.4 sarcosine oxidase subunit delta compare
PFLU_RS16275 +0.3 1.6 oxidoreductase compare
PFLU_RS24420 +0.3 2.1 class I SAM-dependent methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in stress experiments

For stress D-Glucose across organisms