Experiment set19IT055 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and L-Glutamine (N); with TAPS; with Sodium chloride

200 most important genes:

  gene name fitness t score description  
PFLU_RS23390 -6.0 -4.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS02490 -5.2 -13.6 phosphoserine phosphatase SerB compare
PFLU_RS28535 -5.1 -15.3 dihydroxy-acid dehydratase compare
PFLU_RS20575 -4.8 -7.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20565 -4.7 -13.3 3-isopropylmalate dehydrogenase compare
PFLU_RS25640 -4.7 -13.7 ketol-acid reductoisomerase compare
PFLU_RS28165 -4.6 -11.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS27370 -4.6 -13.8 anthranilate phosphoribosyltransferase compare
PFLU_RS20580 -4.6 -12.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28385 -4.5 -16.8 homoserine O-acetyltransferase compare
PFLU_RS08410 -4.4 -9.4 HTH-type transcriptional regulator CysB compare
PFLU_RS02590 -4.4 -9.8 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01620 -4.4 -6.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01605 -4.4 -7.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27365 -4.4 -12.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01900 -4.3 -6.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28390 -4.3 -13.7 methionine biosynthesis protein MetW compare
PFLU_RS00175 -4.2 -8.0 tryptophan synthase subunit alpha compare
PFLU_RS04465 -4.1 -11.2 ATP phosphoribosyltransferase compare
PFLU_RS24765 -4.1 -24.2 2-isopropylmalate synthase compare
PFLU_RS25645 -4.1 -2.8 acetolactate synthase small subunit compare
PFLU_RS00180 -4.1 -8.2 tryptophan synthase subunit beta compare
PFLU_RS20510 -4.0 -15.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01895 -3.9 -8.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01610 -3.9 -10.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS04470 -3.8 -12.6 histidinol dehydrogenase compare
PFLU_RS12980 -3.8 -6.8 nitrite/sulfite reductase compare
PFLU_RS20540 -3.8 -12.8 phosphoribosylanthranilate isomerase compare
PFLU_RS13750 -3.7 -3.5 hypothetical protein compare
PFLU_RS12975 -3.5 -3.4 DUF934 domain-containing protein compare
PFLU_RS28655 -3.5 -14.0 HAD family hydrolase compare
PFLU_RS20515 -3.4 -4.0 amidophosphoribosyltransferase compare
PFLU_RS28645 -3.3 -17.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS18505 -3.3 -9.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01995 -3.3 -13.5 malate dehydrogenase compare
PFLU_RS02625 -3.3 -11.0 ribonuclease R compare
PFLU_RS14810 -3.2 -3.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS27465 -3.2 -3.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS03770 -3.0 -15.7 sulfate adenylyltransferase subunit CysN compare
PFLU_RS09055 -3.0 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01670 -2.9 -10.0 protein-export chaperone SecB compare
PFLU_RS03765 -2.9 -11.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS27630 -2.8 -5.4 dethiobiotin synthase compare
PFLU_RS25360 -2.8 -9.0 glutamate 5-kinase compare
PFLU_RS25735 -2.8 -4.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07230 -2.7 -13.0 RNA polymerase sigma factor RpoE compare
PFLU_RS07275 -2.7 -3.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS23380 -2.7 -2.5 HAD-IB family hydrolase compare
PFLU_RS02980 -2.5 -2.4 precorrin-8X methylmutase compare
PFLU_RS22740 -2.5 -3.0 phosphoadenylyl-sulfate reductase compare
PFLU_RS01095 -2.5 -4.3 ribbon-helix-helix protein, CopG family compare
PFLU_RS22070 -2.4 -4.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS21425 -2.4 -5.1 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS27640 -2.4 -2.9 alpha/beta fold hydrolase compare
PFLU_RS22105 -2.4 -6.3 cysteine synthase CysM compare
PFLU_RS25750 -2.3 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS27475 -2.3 -2.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS01625 -2.3 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS00065 -2.2 -10.5 lysophospholipid acyltransferase compare
PFLU_RS02565 -2.2 -4.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS13475 -2.2 -12.8 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS31100 -2.2 -3.9 preprotein translocase subunit SecG compare
PFLU_RS05655 -2.2 -3.4 DeoR/GlpR family transcriptional regulator compare
PFLU_RS29820 -2.2 -17.0 alanine:cation symporter family protein compare
PFLU_RS29515 -2.2 -10.3 RidA family protein compare
PFLU_RS01960 -2.1 -1.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS07645 -2.1 -5.1 hypothetical protein compare
PFLU_RS14550 -2.1 -7.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25760 -2.1 -4.9 glucose-6-phosphate isomerase compare
PFLU_RS01585 -2.0 -8.5 oxidative damage protection protein compare
PFLU_RS01965 -2.0 -2.3 ATP-dependent protease subunit HslV compare
PFLU_RS19165 -2.0 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS26635 -2.0 -6.8 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS02275 -2.0 -1.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS27910 -1.9 -2.3 helix-turn-helix transcriptional regulator compare
PFLU_RS07685 -1.9 -5.4 transcriptional repressor LexA compare
PFLU_RS00870 -1.9 -3.3 hypothetical protein compare
PFLU_RS06310 -1.9 -7.8 sigma E protease regulator RseP compare
PFLU_RS27650 -1.9 -9.0 biotin synthase BioB compare
PFLU_RS16435 -1.8 -11.3 glycogen debranching protein GlgX compare
PFLU_RS25730 -1.8 -11.7 PAS domain S-box protein compare
PFLU_RS28320 -1.8 -2.4 glutathione synthase compare
PFLU_RS24090 -1.8 -1.2 Holliday junction branch migration protein RuvA compare
PFLU_RS24205 -1.8 -2.3 DNA binding protein compare
PFLU_RS13895 -1.8 -1.9 helix-turn-helix transcriptional regulator compare
PFLU_RS28695 -1.7 -3.9 phosphoglycerate dehydrogenase compare
PFLU_RS29550 -1.7 -5.0 ATP-dependent DNA helicase RecG compare
PFLU_RS05250 -1.7 -3.4 elongation factor 4 compare
PFLU_RS07665 -1.7 -2.6 type I DNA topoisomerase compare
PFLU_RS24900 -1.7 -4.2 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS06055 -1.6 -2.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS03665 -1.6 -4.3 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS23065 -1.6 -8.1 phosphate acyltransferase PlsX compare
PFLU_RS21495 -1.6 -1.9 TlpA family protein disulfide reductase compare
PFLU_RS07255 -1.6 -3.5 sulfurtransferase TusA family protein compare
PFLU_RS15410 -1.6 -1.4 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS19170 -1.6 -3.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS23240 -1.6 -8.0 magnesium transporter compare
PFLU_RS05630 -1.5 -1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01315 -1.5 -2.8 Hsp33 family molecular chaperone HslO compare
PFLU_RS04220 -1.5 -7.7 FadR family transcriptional regulator compare
PFLU_RS18530 -1.5 -4.0 DNA translocase FtsK compare
PFLU_RS23585 -1.5 -6.8 GntP family permease compare
PFLU_RS03610 -1.5 -4.9 redox-regulated ATPase YchF compare
PFLU_RS13540 -1.5 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS29760 -1.5 -8.3 phosphate ABC transporter permease PstA compare
PFLU_RS26530 -1.5 -10.6 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS04475 -1.5 -9.0 histidinol-phosphate transaminase compare
PFLU_RS24025 -1.5 -8.1 quinolinate synthase NadA compare
PFLU_RS16425 -1.5 -9.5 malto-oligosyltrehalose synthase compare
PFLU_RS29090 -1.5 -6.1 exopolyphosphatase compare
PFLU_RS04070 -1.5 -2.5 peptide chain release factor 3 compare
PFLU_RS21665 -1.4 -5.4 MinD/ParA family protein compare
PFLU_RS16390 -1.4 -2.0 DUF411 domain-containing protein compare
PFLU_RS24670 -1.4 -2.5 HigA family addiction module antidote protein compare
PFLU_RS29815 -1.4 -4.5 aspartate ammonia-lyase compare
PFLU_RS15205 -1.4 -2.8 ribose ABC transporter permease compare
PFLU_RS01910 -1.4 -1.8 sterol-binding protein compare
PFLU_RS03970 -1.4 -6.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS08160 -1.4 -5.8 sugar transferase compare
PFLU_RS10430 -1.4 -2.4 peptidase compare
PFLU_RS29750 -1.4 -4.3 phosphate signaling complex protein PhoU compare
PFLU_RS28420 -1.4 -7.4 thiazole synthase compare
PFLU_RS12450 -1.4 -7.8 cyclic peptide export ABC transporter compare
PFLU_RS21205 -1.4 -8.2 N-acetylglutaminylglutamine synthetase compare
PFLU_RS08505 -1.4 -6.7 protease HtpX compare
PFLU_RS16410 -1.4 -10.7 glycogen synthase GlgA compare
PFLU_RS31425 -1.3 -2.1 hypothetical protein compare
PFLU_RS30215 -1.3 -4.7 KTSC domain-containing protein compare
PFLU_RS02585 -1.3 -4.8 protease modulator HflC compare
PFLU_RS21200 -1.3 -8.0 N-acetylglutaminylglutamine amidotransferase compare
PFLU_RS04140 -1.3 -2.1 response regulator transcription factor compare
PFLU_RS13875 -1.3 -4.9 ImmA/IrrE family metallo-endopeptidase compare
PFLU_RS15610 -1.3 -3.6 helix-turn-helix transcriptional regulator compare
PFLU_RS31710 -1.3 -2.9 hypothetical protein compare
PFLU_RS18655 -1.3 -1.2 NADH-quinone oxidoreductase subunit J compare
PFLU_RS05640 -1.3 -7.1 amino acid ABC transporter permease compare
PFLU_RS02580 -1.3 -6.3 FtsH protease activity modulator HflK compare
PFLU_RS19175 -1.3 -5.9 trigger factor compare
PFLU_RS29095 -1.3 -11.3 polyphosphate kinase 1 compare
PFLU_RS24125 -1.3 -3.4 cold-shock protein compare
PFLU_RS30030 -1.3 -1.2 membrane protein compare
PFLU_RS27635 -1.2 -5.3 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS16785 -1.2 -2.0 GAF domain-containing protein compare
PFLU_RS21300 -1.2 -4.1 cysteine hydrolase compare
PFLU_RS28195 -1.2 -7.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS24330 -1.2 -4.2 phosphogluconate dehydratase compare
PFLU_RS02645 -1.2 -6.4 hypothetical protein compare
PFLU_RS06555 -1.2 -7.0 OmpA family protein compare
PFLU_RS27645 -1.2 -6.8 8-amino-7-oxononanoate synthase compare
PFLU_RS27380 -1.2 -8.3 anthranilate synthase component I compare
PFLU_RS12660 -1.2 -4.6 hypothetical protein compare
PFLU_RS24160 -1.2 -4.6 HAMP domain-containing protein compare
PFLU_RS00440 -1.2 -8.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS14300 -1.1 -2.0 response regulator transcription factor compare
PFLU_RS15910 -1.1 -2.1 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS13665 -1.1 -1.4 MarR family transcriptional regulator compare
PFLU_RS23725 -1.1 -5.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS18735 -1.1 -1.5 hypothetical protein compare
PFLU_RS01955 -1.1 -5.5 DUF971 domain-containing protein compare
PFLU_RS27690 -1.1 -2.3 response regulator compare
PFLU_RS04150 -1.1 -4.1 DUF1043 family protein compare
PFLU_RS30345 -1.1 -2.1 DUF2559 family protein compare
PFLU_RS00955 -1.1 -6.2 sulfate ABC transporter permease subunit CysW compare
PFLU_RS24325 -1.1 -7.5 glucokinase compare
PFLU_RS05910 -1.1 -2.4 response regulator transcription factor compare
PFLU_RS18635 -1.1 -1.6 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS00310 -1.1 -1.7 twin transmembrane helix small protein compare
PFLU_RS15795 -1.1 -1.6 hypothetical protein compare
PFLU_RS23460 -1.1 -2.3 antibiotic biosynthesis monooxygenase compare
PFLU_RS08675 -1.1 -2.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS18420 -1.0 -2.0 hypothetical protein compare
PFLU_RS05340 -1.0 -2.3 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS27375 -1.0 -5.2 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS26640 -1.0 -6.4 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS18665 -1.0 -1.3 NADH-quinone oxidoreductase subunit L compare
PFLU_RS05690 -1.0 -1.7 Grx4 family monothiol glutaredoxin compare
PFLU_RS26535 -1.0 -4.5 thiamine phosphate synthase compare
PFLU_RS08125 -1.0 -2.0 integration host factor subunit beta compare
PFLU_RS04435 -1.0 -4.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS05635 -1.0 -5.6 ABC transporter permease subunit compare
PFLU_RS13085 -1.0 -2.5 DUF1315 family protein compare
PFLU_RS18625 -1.0 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS00415 -1.0 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29900 -1.0 -6.6 DNA helicase II compare
PFLU_RS29065 -1.0 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS08650 -1.0 -1.3 heme exporter protein CcmB compare
PFLU_RS25335 -1.0 -5.1 sulfate transporter CysZ compare
PFLU_RS30730 -1.0 -1.9 helix-turn-helix domain-containing protein compare
PFLU_RS02430 -1.0 -7.3 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS29875 -1.0 -7.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS14520 -1.0 -2.6 hypothetical protein compare
PFLU_RS31650 -1.0 -1.9 hypothetical protein compare
PFLU_RS23045 -0.9 -2.8 beta-ketoacyl-ACP synthase II compare
PFLU_RS19935 -0.9 -1.3 type II secretion system protein GspF compare
PFLU_RS25000 -0.9 -4.1 response regulator compare
PFLU_RS00245 -0.9 -4.8 YheV family putative metal-binding protein compare
PFLU_RS10340 -0.9 -1.8 hypothetical protein compare
PFLU_RS31530 -0.9 -0.9 transposase compare
PFLU_RS22520 -0.9 -2.1 GntR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For stress D-Glucose in Pseudomonas fluorescens SBW25-INTG

For stress D-Glucose across organisms