Experiment set19IT051 for Bacteroides thetaiotaomicron VPI-5482
PEG (Day 3) - Cage3;Mouse2
Group: mouse_peg_treatmentMedia: + Polyethylene glycol (15 vol%)
Culturing: Btheta_ML6a
By: Deanna Pepin on 2/1/21
Specific Phenotypes
For 6 genes in this experiment
For mouse_peg_treatment Polyethylene glycol in Bacteroides thetaiotaomicron VPI-5482
For mouse_peg_treatment Polyethylene glycol across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Acid resistance mechanisms | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Citrate cycle (TCA cycle)
- Glutamate metabolism
- Alanine and aspartate metabolism
- Glycine, serine and threonine metabolism
- Valine, leucine and isoleucine degradation
- beta-Alanine metabolism
- Taurine and hypotaurine metabolism
- Pyruvate metabolism
- Butanoate metabolism
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamate degradation IX (via 4-aminobutanoate) | 1 | 1 | 1 |
| phenylmercury acetate degradation | 2 | 1 | 1 |
| glycine biosynthesis II | 3 | 3 | 1 |
| glycine cleavage | 3 | 3 | 1 |
| pyruvate decarboxylation to acetyl CoA I | 3 | 2 | 1 |
| 2-oxoglutarate decarboxylation to succinyl-CoA | 3 | 2 | 1 |
| 2-oxoisovalerate decarboxylation to isobutanoyl-CoA | 3 | 2 | 1 |
| GABA shunt II | 4 | 1 | 1 |
| GABA shunt I | 4 | 1 | 1 |
| superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | 22 | 17 | 1 |