Experiment set19IT037 for Bacteroides thetaiotaomicron VPI-5482
Post-colonization (Day 12) - Cage7;Mouse3
Group: mouse_post_colonizationMedia:
Culturing: Btheta_ML6a
By: Deanna Pepin on 2/1/21
Specific Phenotypes
For 11 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pyruvate metabolism
- Carbon fixation in photosynthetic organisms
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| choline-O-sulfate degradation | 3 | 1 | 1 |
| C4 photosynthetic carbon assimilation cycle, NADP-ME type | 7 | 4 | 2 |
| mammalian high-mannose N-glycan degradation | 5 | 5 | 1 |
| yeast mannan degradation | 5 | 3 | 1 |
| methylgallate degradation | 6 | 2 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 7 | 2 |
| protocatechuate degradation I (meta-cleavage pathway) | 8 | 3 | 1 |
| superpathway of vanillin and vanillate degradation | 10 | 3 | 1 |
| syringate degradation | 12 | 3 | 1 |
| gluconeogenesis I | 13 | 11 | 1 |