Experiment set19IT032 for Pseudomonas stutzeri RCH2

Compare to:

Min media with glucose

200 most important genes:

  gene name fitness t score description  
Psest_0279 -5.9 -4.1 methionine biosynthesis protein MetW compare
Psest_0508 -5.8 -5.7 gamma-glutamyl phosphate reductase compare
Psest_0062 -5.5 -9.2 tryptophan synthase, alpha subunit compare
Psest_3866 -5.5 -10.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0152 -5.2 -6.2 Imidazoleglycerol-phosphate dehydratase compare
Psest_3647 -5.2 -6.1 Indole-3-glycerol phosphate synthase compare
Psest_1898 -5.1 -10.8 ABC-type sugar transport system, permease component compare
Psest_1895 -5.1 -8.4 Signal transduction histidine kinase compare
Psest_2590 -5.1 -1.4 3-isopropylmalate dehydratase, small subunit compare
Psest_0155 -5.1 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3648 -5.0 -6.0 anthranilate phosphoribosyltransferase compare
Psest_0063 -5.0 -6.9 tryptophan synthase, beta subunit compare
Psest_3650 -5.0 -11.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0153 -5.0 -10.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3649 -4.9 -4.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3864 -4.9 -10.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1897 -4.9 -14.7 ABC-type sugar transport systems, permease components compare
Psest_0852 -4.9 -8.1 glucose-6-phosphate 1-dehydrogenase compare
Psest_3384 -4.9 -5.8 glutamate 5-kinase compare
Psest_2578 -4.8 -9.1 O-succinylhomoserine sulfhydrylase compare
Psest_1896 -4.5 -6.8 ABC-type sugar transport system, periplasmic component compare
Psest_3944 -4.5 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2584 -4.4 -7.3 Phosphoribosylanthranilate isomerase compare
Psest_3943 -4.4 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0326 -4.4 -17.0 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0280 -4.3 -12.5 homoserine O-acetyltransferase compare
Psest_0325 -4.3 -12.1 Putative threonine efflux protein compare
Psest_3298 -4.3 -10.6 histidinol dehydrogenase compare
Psest_3299 -4.2 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0853 -4.2 -4.1 6-phosphogluconolactonase compare
Psest_0855 -4.1 -6.8 NAD-dependent aldehyde dehydrogenases compare
Psest_0849 -4.0 -15.2 6-phosphogluconate dehydratase compare
Psest_2591 -3.9 -2.7 3-isopropylmalate dehydratase, large subunit compare
Psest_3818 -3.9 -8.4 endoribonuclease L-PSP, putative compare
Psest_2589 -3.8 -10.2 3-isopropylmalate dehydrogenase compare
Psest_0313 -3.7 -3.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0687 -3.6 -8.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3226 -3.5 -1.0 Predicted membrane protein compare
Psest_3297 -3.4 -12.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3998 -3.3 -3.2 glutamate--cysteine ligase compare
Psest_1899 -3.2 -6.1 ABC-type sugar transport systems, ATPase components compare
Psest_1473 -3.1 -6.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1772 -3.1 -4.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1496 -3.1 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_0850 -2.9 -9.7 glucokinase, proteobacterial type compare
Psest_4086 -2.8 -11.3 Transcriptional regulator compare
Psest_4084 -2.7 -14.2 oxaloacetate decarboxylase alpha subunit compare
Psest_4085 -2.6 -13.1 Biotin carboxylase compare
Psest_3322 -2.5 -17.0 TIGR02099 family protein compare
Psest_3190 -2.5 -6.4 pyruvate kinase compare
Psest_1805 -2.4 -2.6 integration host factor, beta subunit compare
Psest_2123 -2.3 -2.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_2579 -2.3 -2.7 amidophosphoribosyltransferase compare
Psest_2585 -2.3 -0.9 pseudouridylate synthase I compare
Psest_0999 -2.2 -1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2532 -2.2 -4.2 Uncharacterized protein conserved in bacteria compare
Psest_3399 -2.2 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2766 -2.0 -1.4 hypothetical protein compare
Psest_1295 -2.0 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0327 -2.0 -4.5 Transcriptional regulator compare
Psest_2786 -2.0 -1.3 Domain of unknown function (DUF3597). compare
Psest_1814 -1.9 -12.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2872 -1.9 -2.2 protein RecA compare
Psest_4088 -1.9 -3.7 Transcriptional regulators compare
Psest_3247 -1.9 -1.9 Uncharacterized membrane protein compare
Psest_1974 -1.9 -3.8 integration host factor, alpha subunit compare
Psest_2088 -1.9 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1986 -1.9 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_3565 -1.9 -1.6 hypothetical protein compare
Psest_3338 -1.8 -1.3 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2988 -1.8 -4.9 aspartate kinase, monofunctional class compare
Psest_2329 -1.8 -11.1 Transcriptional regulator compare
Psest_2967 -1.7 -1.7 flagellar basal-body rod protein FlgC compare
Psest_1012 -1.7 -4.2 Signal transduction histidine kinase compare
Psest_1037 -1.7 -2.0 acetolactate synthase, small subunit compare
Psest_3355 -1.7 -5.0 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_2968 -1.6 -5.8 flagellar basal-body rod protein FlgB compare
Psest_3697 -1.6 -2.8 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0558 -1.6 -0.7 urease, beta subunit compare
Psest_0993 -1.6 -8.9 Glucose-6-phosphate isomerase compare
Psest_3304 -1.6 -5.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3693 -1.5 -1.8 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1870 -1.5 -1.5 Transcriptional regulators compare
Psest_1474 -1.5 -1.7 phosphoribosylaminoimidazole synthetase compare
Psest_2983 -1.5 -1.9 hypothetical protein compare
Psest_0359 -1.5 -1.9 Transcriptional regulators compare
Psest_3496 -1.5 -1.4 Predicted metal-binding protein compare
Psest_0511 -1.4 -1.5 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3456 -1.4 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_1997 -1.4 -2.0 6-phosphogluconolactonase compare
Psest_1686 -1.4 -4.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0718 -1.4 -3.0 nicotinate-nucleotide pyrophosphorylase compare
Psest_3092 -1.4 -2.0 ribonuclease III, bacterial compare
Psest_0489 -1.4 -1.3 phosphoserine phosphatase SerB compare
Psest_3159 -1.4 -3.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0842 -1.4 -2.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_2525 -1.4 -2.1 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_0715 -1.3 -8.5 NADH dehydrogenase, FAD-containing subunit compare
Psest_1704 -1.3 -0.9 Dehydrogenases (flavoproteins) compare
Psest_2090 -1.3 -2.6 Protein of unknown function (DUF2970). compare
Psest_0958 -1.3 -4.7 Oligoketide cyclase/lipid transport protein compare
Psest_0494 -1.3 -5.5 Rhodanese-related sulfurtransferase compare
Psest_2308 -1.3 -1.2 Predicted Fe-S protein compare
Psest_2726 -1.3 -1.2 Rhodanese-related sulfurtransferase compare
Psest_3377 -1.3 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3146 -1.3 -1.8 hypothetical protein compare
Psest_1640 -1.3 -7.6 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0191 -1.3 -0.6 PAS domain S-box compare
Psest_1626 -1.3 -2.9 Predicted integral membrane protein compare
Psest_2651 -1.3 -2.6 DNA topoisomerase I, bacterial compare
Psest_1562 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1659 -1.3 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1463 -1.3 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_2538 -1.2 -1.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3189 -1.2 -2.6 hypothetical protein compare
Psest_1013 -1.2 -2.5 phosphoribosylamine--glycine ligase compare
Psest_1602 -1.2 -2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2454 -1.2 -1.9 Rhodanese-related sulfurtransferase compare
Psest_3476 -1.2 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3736 -1.2 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_3395 -1.2 -1.1 hypothetical protein compare
Psest_2698 -1.2 -3.3 benzoate 1,2-dioxygenase, small subunit compare
Psest_2718 -1.2 -1.0 hypothetical protein compare
Psest_3213 -1.2 -4.0 acetate kinase compare
Psest_4221 -1.1 -2.0 homoserine kinase, Neisseria type compare
Psest_0922 -1.1 -3.3 alkylhydroperoxidase AhpD family core domain compare
Psest_2304 -1.1 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2025 -1.1 -0.9 cold shock domain protein CspD compare
Psest_3005 -1.1 -2.6 Fructose-2,6-bisphosphatase compare
Psest_2379 -1.1 -4.8 PAS domain S-box compare
Psest_3937 -1.1 -1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0790 -1.0 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_4151 -1.0 -2.3 Flagellar hook capping protein compare
Psest_3843 -1.0 -4.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3305 -1.0 -5.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3546 -1.0 -0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0719 -1.0 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_2744 -1.0 -1.2 Uncharacterized conserved protein compare
Psest_1905 -1.0 -1.7 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_1277 -1.0 -6.0 2-isopropylmalate synthase, yeast type compare
Psest_3862 -1.0 -6.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2626 -1.0 -1.7 Flp pilus assembly protein CpaB compare
Psest_0078 -1.0 -0.9 hypothetical protein compare
Psest_3042 -1.0 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_2864 -1.0 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3323 -1.0 -2.8 ribonuclease, Rne/Rng family compare
Psest_1075 -1.0 -2.7 Predicted transcriptional regulators compare
Psest_3064 -1.0 -1.9 hypothetical protein compare
Psest_0060 -1.0 -1.9 Predicted Fe-S protein compare
Psest_0697 -1.0 -1.7 ribosomal protein L9 compare
Psest_3890 -1.0 -1.3 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3659 -1.0 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3306 -0.9 -3.2 conserved hypothetical integral membrane protein compare
Psest_1884 -0.9 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1000 -0.9 -5.0 PAS domain S-box compare
Psest_1492 -0.9 -4.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_4043 -0.9 -2.2 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1665 -0.9 -2.9 hypothetical protein compare
Psest_1417 -0.9 -1.0 hypothetical protein compare
Psest_2083 -0.9 -3.4 Putative sterol carrier protein compare
Psest_1349 -0.9 -2.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0316 -0.9 -0.9 Cytochrome c556 compare
Psest_3787 -0.9 -3.0 Domain of Unknown Function (DUF1080). compare
Psest_1657 -0.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2712 -0.9 -2.5 Surface lipoprotein compare
Psest_2023 -0.9 -1.8 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1016 -0.9 -3.3 putative TIM-barrel protein, nifR3 family compare
Psest_2531 -0.9 -5.4 cytochrome c oxidase accessory protein FixG compare
Psest_1546 -0.9 -3.3 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Psest_3710 -0.9 -5.9 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3711 -0.9 -6.3 Glutamate synthase domain 2 compare
Psest_1864 -0.9 -2.7 diguanylate cyclase (GGDEF) domain compare
Psest_0870 -0.9 -4.6 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_3884 -0.9 -0.6 Signal transduction histidine kinase compare
Psest_2278 -0.9 -1.5 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1837 -0.9 -3.6 Endoglucanase compare
Psest_0498 -0.9 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_3048 -0.9 -1.2 hypothetical protein compare
Psest_3743 -0.8 -2.1 Regulator of sigma D compare
Psest_3214 -0.8 -3.4 phosphate acetyltransferase compare
Psest_1472 -0.8 -4.2 Protein of unknown function (DUF3108). compare
Psest_0208 -0.8 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_3895 -0.8 -1.9 hypothetical protein compare
Psest_3531 -0.8 -1.1 Peptidase propeptide and YPEB domain. compare
Psest_1082 -0.8 -1.4 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3455 -0.8 -1.3 Dihaem cytochrome c. compare
Psest_0083 -0.8 -1.6 Uncharacterized conserved protein compare
Psest_0778 -0.8 -1.6 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_1145 -0.8 -1.9 Predicted methylated DNA-protein cysteine methyltransferase compare
Psest_3790 -0.8 -4.3 Cytochrome c5 compare
Psest_3991 -0.8 -1.2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3307 -0.8 -3.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1468 -0.8 -2.2 hypothetical protein compare
Psest_2334 -0.8 -5.0 Uncharacterized protein conserved in bacteria compare
Psest_2899 -0.8 -1.1 hypothetical protein compare
Psest_2850 -0.8 -1.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1053 -0.8 -1.2 hypothetical protein compare
Psest_3927 -0.8 -1.8 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3770 -0.8 -3.7 secondary thiamine-phosphate synthase enzyme compare
Psest_1893 -0.8 -2.5 glucokinase, proteobacterial type compare


Specific Phenotypes

For 13 genes in this experiment