Experiment set19IT030 for Pseudomonas stutzeri RCH2

Compare to:

Defined media with L-tyrosine disodium salt

200 most important genes:

  gene name fitness t score description  
Psest_0279 -5.7 -3.9 methionine biosynthesis protein MetW compare
Psest_0062 -5.6 -6.6 tryptophan synthase, alpha subunit compare
Psest_3866 -5.2 -10.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3648 -5.1 -3.5 anthranilate phosphoribosyltransferase compare
Psest_0852 -5.0 -7.6 glucose-6-phosphate 1-dehydrogenase compare
Psest_0508 -5.0 -6.8 gamma-glutamyl phosphate reductase compare
Psest_2590 -4.9 -1.4 3-isopropylmalate dehydratase, small subunit compare
Psest_0153 -4.8 -9.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3650 -4.8 -8.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3647 -4.8 -5.7 Indole-3-glycerol phosphate synthase compare
Psest_0063 -4.7 -7.8 tryptophan synthase, beta subunit compare
Psest_0280 -4.5 -10.4 homoserine O-acetyltransferase compare
Psest_3384 -4.5 -6.8 glutamate 5-kinase compare
Psest_0152 -4.4 -6.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_0325 -4.3 -10.1 Putative threonine efflux protein compare
Psest_3512 -4.3 -10.3 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) compare
Psest_3864 -4.2 -12.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2578 -4.2 -10.7 O-succinylhomoserine sulfhydrylase compare
Psest_0155 -4.0 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0853 -4.0 -3.9 6-phosphogluconolactonase compare
Psest_3299 -4.0 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3943 -4.0 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2584 -3.8 -4.3 Phosphoribosylanthranilate isomerase compare
Psest_3649 -3.8 -8.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0855 -3.7 -7.1 NAD-dependent aldehyde dehydrogenases compare
Psest_1473 -3.7 -6.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2591 -3.7 -2.5 3-isopropylmalate dehydratase, large subunit compare
Psest_2589 -3.6 -10.2 3-isopropylmalate dehydrogenase compare
Psest_3298 -3.6 -10.8 histidinol dehydrogenase compare
Psest_1772 -3.5 -3.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3700 -3.4 -1.6 hypothetical protein compare
Psest_0849 -3.3 -15.0 6-phosphogluconate dehydratase compare
Psest_0313 -3.3 -4.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0326 -3.2 -11.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3944 -3.1 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2901 -3.1 -2.2 hypothetical protein compare
Psest_0687 -3.1 -8.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3998 -3.0 -3.6 glutamate--cysteine ligase compare
Psest_2872 -2.9 -2.7 protein RecA compare
Psest_3511 -2.9 -9.1 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Psest_1463 -2.8 -1.3 SufE protein probably involved in Fe-S center assembly compare
Psest_2532 -2.7 -4.1 Uncharacterized protein conserved in bacteria compare
Psest_1306 -2.5 -2.1 hypothetical protein compare
Psest_0498 -2.4 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_0296 -2.4 -10.0 glutathione synthetase, prokaryotic compare
Psest_3297 -2.4 -9.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3818 -2.4 -8.2 endoribonuclease L-PSP, putative compare
Psest_1898 -2.3 -10.7 ABC-type sugar transport system, permease component compare
Psest_3031 -2.3 -0.9 hypothetical protein compare
Psest_1897 -2.3 -12.1 ABC-type sugar transport systems, permease components compare
Psest_3014 -2.3 -2.4 cob(I)alamin adenosyltransferase compare
Psest_3226 -2.2 -0.8 Predicted membrane protein compare
Psest_0327 -2.1 -4.3 Transcriptional regulator compare
Psest_1895 -2.1 -6.7 Signal transduction histidine kinase compare
Psest_2756 -2.1 -1.6 hypothetical protein compare
Psest_1037 -2.0 -2.8 acetolactate synthase, small subunit compare
Psest_1999 -2.0 -0.9 pseudouridine synthase compare
Psest_0867 -1.9 -2.2 hypothetical protein compare
Psest_2579 -1.8 -2.8 amidophosphoribosyltransferase compare
Psest_0850 -1.8 -7.1 glucokinase, proteobacterial type compare
Psest_2329 -1.8 -10.8 Transcriptional regulator compare
Psest_3322 -1.8 -13.0 TIGR02099 family protein compare
Psest_2088 -1.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1896 -1.7 -5.3 ABC-type sugar transport system, periplasmic component compare
Psest_4183 -1.7 -2.4 PilZ domain. compare
Psest_2454 -1.7 -2.2 Rhodanese-related sulfurtransferase compare
Psest_4406 -1.7 -1.0 hypothetical protein compare
Psest_1315 -1.7 -2.2 hypothetical protein compare
Psest_1814 -1.7 -10.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4177 -1.7 -1.9 flagellar biosynthetic protein FliP compare
Psest_1679 -1.6 -1.8 ribonuclease, Rne/Rng family compare
Psest_2090 -1.6 -2.7 Protein of unknown function (DUF2970). compare
Psest_3502 -1.6 -3.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_4088 -1.6 -4.2 Transcriptional regulators compare
Psest_4219 -1.6 -2.1 DNA polymerase I compare
Psest_1082 -1.6 -1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1657 -1.6 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0999 -1.5 -1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1986 -1.5 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1077 -1.5 -6.0 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) (from data) compare
Psest_0520 -1.5 -0.9 hypothetical protein compare
Psest_0558 -1.5 -0.7 urease, beta subunit compare
Psest_1805 -1.5 -1.7 integration host factor, beta subunit compare
Psest_0078 -1.5 -1.1 hypothetical protein compare
Psest_0958 -1.5 -5.6 Oligoketide cyclase/lipid transport protein compare
Psest_1167 -1.5 -1.0 hypothetical protein compare
Psest_3910 -1.5 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_0716 -1.4 -1.9 Protein of unknown function (DUF3094). compare
Psest_1078 -1.4 -4.0 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_0993 -1.4 -7.8 Glucose-6-phosphate isomerase compare
Psest_1899 -1.4 -3.3 ABC-type sugar transport systems, ATPase components compare
Psest_0718 -1.4 -3.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_3514 -1.4 -7.6 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) compare
Psest_2424 -1.4 -1.9 K+ transport systems, NAD-binding component compare
Psest_0494 -1.4 -5.2 Rhodanese-related sulfurtransferase compare
Psest_3881 -1.4 -1.3 hypothetical protein compare
Psest_2757 -1.3 -1.3 hypothetical protein compare
Psest_2025 -1.3 -1.0 cold shock domain protein CspD compare
Psest_1686 -1.3 -3.9 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3247 -1.3 -1.5 Uncharacterized membrane protein compare
Psest_2718 -1.3 -1.0 hypothetical protein compare
Psest_1474 -1.3 -0.9 phosphoribosylaminoimidazole synthetase compare
Psest_0485 -1.3 -2.3 clan AA aspartic protease, TIGR02281 family compare
Psest_2651 -1.3 -2.8 DNA topoisomerase I, bacterial compare
Psest_2017 -1.3 -4.4 Predicted acyltransferase compare
Psest_3391 -1.3 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0359 -1.3 -2.0 Transcriptional regulators compare
Psest_4010 -1.3 -1.2 peroxiredoxin, OsmC subfamily compare
Psest_0744 -1.3 -0.8 Uncharacterized conserved protein compare
Psest_0782 -1.3 -3.5 Transcriptional regulator of aromatic amino acids metabolism compare
Psest_3159 -1.3 -2.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1647 -1.3 -4.1 Lhr-like helicases compare
Psest_3070 -1.3 -1.9 3-oxoadipyl-CoA thiolase compare
Psest_0489 -1.2 -0.8 phosphoserine phosphatase SerB compare
Psest_3190 -1.2 -4.0 pyruvate kinase compare
Psest_3562 -1.2 -1.8 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_1456 -1.2 -2.4 Protein of unknown function (DUF2892). compare
Psest_1013 -1.2 -1.1 phosphoribosylamine--glycine ligase compare
Psest_4303 -1.2 -1.8 HEAT repeat. compare
Psest_4152 -1.2 -2.6 flagellar basal-body rod protein FlgC compare
Psest_2023 -1.2 -2.8 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2470 -1.2 -1.5 hypothetical protein compare
Psest_1248 -1.2 -4.0 RNA methyltransferase, TrmH family, group 1 compare
Psest_3129 -1.2 -0.6 tyrosine recombinase XerD compare
Psest_3270 -1.1 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2123 -1.1 -1.5 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_2907 -1.1 -1.0 Protein of unknown function (DUF3618). compare
Psest_1677 -1.1 -2.3 Protein-tyrosine-phosphatase compare
Psest_3531 -1.1 -0.9 Peptidase propeptide and YPEB domain. compare
Psest_3862 -1.1 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2899 -1.1 -1.3 hypothetical protein compare
Psest_1492 -1.1 -5.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1305 -1.1 -2.9 Heat shock protein compare
Psest_0609 -1.1 -0.8 hypothetical protein compare
Psest_2122 -1.1 -0.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_4298 -1.1 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1242 -1.1 -1.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4363 -1.1 -5.0 ATPases involved in chromosome partitioning compare
Psest_1000 -1.1 -5.7 PAS domain S-box compare
Psest_1388 -1.0 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3174 -1.0 -7.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2750 -1.0 -3.4 Nucleoside-diphosphate-sugar epimerases compare
Psest_2561 -1.0 -0.7 hypothetical protein compare
Psest_2248 -1.0 -2.2 Predicted transcriptional regulators compare
Psest_1704 -1.0 -0.7 Dehydrogenases (flavoproteins) compare
Psest_2527 -1.0 -3.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1905 -1.0 -2.3 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_2786 -1.0 -0.9 Domain of unknown function (DUF3597). compare
Psest_0276 -1.0 -4.9 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_4335 -1.0 -2.0 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3113 -1.0 -1.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2446 -1.0 -1.1 acetyl-CoA acetyltransferases compare
Psest_4371 -1.0 -2.4 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1876 -1.0 -2.0 Predicted membrane protein compare
Psest_0511 -1.0 -1.5 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3191 -1.0 -1.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_3002 -1.0 -1.2 Putative translation initiation inhibitor, yjgF family compare
Psest_3146 -1.0 -1.5 hypothetical protein compare
Psest_3546 -1.0 -0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0466 -0.9 -2.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2585 -0.9 -0.6 pseudouridylate synthase I compare
Psest_3477 -0.9 -2.3 Signal transduction histidine kinase compare
Psest_3237 -0.9 -1.0 hypothetical protein compare
Psest_3399 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_1819 -0.9 -7.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_2339 -0.9 -3.7 transcription elongation factor GreB compare
Psest_2855 -0.9 -0.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1001 -0.9 -1.7 hypothetical protein compare
Psest_2885 -0.9 -1.7 Acyl carrier protein compare
Psest_3792 -0.9 -1.9 Putative translation initiation inhibitor, yjgF family compare
Psest_3872 -0.9 -4.3 FAD/FMN-containing dehydrogenases compare
Psest_2520 -0.9 -1.0 Predicted SAM-dependent methyltransferase compare
Psest_2988 -0.9 -3.7 aspartate kinase, monofunctional class compare
Psest_0151 -0.9 -2.5 Response regulator with putative antiterminator output domain compare
Psest_1183 -0.9 -2.1 hydroxyisourate hydrolase compare
Psest_1660 -0.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3766 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2708 -0.9 -4.7 transaldolase compare
Psest_0715 -0.9 -5.7 NADH dehydrogenase, FAD-containing subunit compare
Psest_1147 -0.9 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4064 -0.9 -1.5 Lactate dehydrogenase and related dehydrogenases compare
Psest_0154 -0.9 -2.8 Uncharacterized conserved protein compare
Psest_0087 -0.9 -2.7 hypothetical protein compare
Psest_0376 -0.9 -2.3 glucarate dehydratase compare
Psest_3565 -0.8 -1.0 hypothetical protein compare
Psest_4243 -0.8 -1.3 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1424 -0.8 -1.6 Lipoate-protein ligase A compare
Psest_2766 -0.8 -0.8 hypothetical protein compare
Psest_1783 -0.8 -1.4 Predicted transporter component compare
Psest_2083 -0.8 -2.7 Putative sterol carrier protein compare
Psest_3736 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1640 -0.8 -5.1 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2906 -0.8 -1.7 tRNA_Thr_CGT compare
Psest_0959 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0709 -0.8 -4.3 pseudouridine synthase, RluA family compare
Psest_2322 -0.8 -2.0 Transcriptional regulators compare
Psest_4079 -0.8 -2.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1666 -0.8 -3.1 PilZ domain. compare
Psest_0299 -0.8 -2.0 Chemotaxis signal transduction protein compare
Psest_1277 -0.8 -4.5 2-isopropylmalate synthase, yeast type compare


Specific Phenotypes

For 18 genes in this experiment

For nutrient L-tyrosine disodium salt in Pseudomonas stutzeri RCH2

For nutrient L-tyrosine disodium salt across organisms