Experiment set19IT026 for Pseudomonas stutzeri RCH2

Compare to:

Defined media with L-Histidine

200 most important genes:

  gene name fitness t score description  
Psest_0279 -6.0 -4.2 methionine biosynthesis protein MetW compare
Psest_0852 -5.7 -5.5 glucose-6-phosphate 1-dehydrogenase compare
Psest_0062 -5.7 -9.5 tryptophan synthase, alpha subunit compare
Psest_3648 -5.5 -3.8 anthranilate phosphoribosyltransferase compare
Psest_1898 -5.4 -6.4 ABC-type sugar transport system, permease component compare
Psest_3647 -5.4 -5.2 Indole-3-glycerol phosphate synthase compare
Psest_3866 -5.4 -11.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1896 -5.3 -5.1 ABC-type sugar transport system, periplasmic component compare
Psest_1897 -5.3 -10.1 ABC-type sugar transport systems, permease components compare
Psest_3650 -5.3 -8.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1895 -5.2 -7.9 Signal transduction histidine kinase compare
Psest_3384 -5.1 -3.5 glutamate 5-kinase compare
Psest_2584 -5.1 -3.5 Phosphoribosylanthranilate isomerase compare
Psest_2590 -5.1 -1.6 3-isopropylmalate dehydratase, small subunit compare
Psest_0508 -4.9 -8.2 gamma-glutamyl phosphate reductase compare
Psest_0063 -4.9 -8.8 tryptophan synthase, beta subunit compare
Psest_0280 -4.8 -10.7 homoserine O-acetyltransferase compare
Psest_0855 -4.7 -5.6 NAD-dependent aldehyde dehydrogenases compare
Psest_3649 -4.7 -7.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2578 -4.5 -10.4 O-succinylhomoserine sulfhydrylase compare
Psest_0850 -4.4 -10.5 glucokinase, proteobacterial type compare
Psest_0853 -4.3 -4.2 6-phosphogluconolactonase compare
Psest_0849 -4.3 -13.6 6-phosphogluconate dehydratase compare
Psest_2591 -4.0 -2.8 3-isopropylmalate dehydratase, large subunit compare
Psest_4085 -3.8 -17.6 Biotin carboxylase compare
Psest_0313 -3.8 -3.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2589 -3.8 -10.6 3-isopropylmalate dehydrogenase compare
Psest_3226 -3.6 -1.1 Predicted membrane protein compare
Psest_1772 -3.6 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4084 -3.5 -16.6 oxaloacetate decarboxylase alpha subunit compare
Psest_3818 -3.5 -8.1 endoribonuclease L-PSP, putative compare
Psest_4086 -3.3 -13.0 Transcriptional regulator compare
Psest_1899 -3.2 -5.2 ABC-type sugar transport systems, ATPase components compare
Psest_2726 -3.0 -1.9 Rhodanese-related sulfurtransferase compare
Psest_4088 -2.7 -4.0 Transcriptional regulators compare
Psest_2872 -2.7 -3.1 protein RecA compare
Psest_3047 -2.7 -1.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2967 -2.6 -2.2 flagellar basal-body rod protein FlgC compare
Psest_3092 -2.6 -2.5 ribonuclease III, bacterial compare
Psest_3322 -2.6 -17.5 TIGR02099 family protein compare
Psest_2532 -2.5 -4.1 Uncharacterized protein conserved in bacteria compare
Psest_3190 -2.5 -6.6 pyruvate kinase compare
Psest_1037 -2.5 -2.9 acetolactate synthase, small subunit compare
Psest_2579 -2.4 -1.7 amidophosphoribosyltransferase compare
Psest_2988 -2.4 -6.5 aspartate kinase, monofunctional class compare
Psest_1492 -2.3 -10.2 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0511 -2.3 -2.4 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0498 -2.3 -1.7 ribosome small subunit-dependent GTPase A compare
Psest_0999 -2.3 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3531 -2.3 -2.0 Peptidase propeptide and YPEB domain. compare
Psest_3862 -2.1 -11.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2329 -2.0 -11.9 Transcriptional regulator compare
Psest_1814 -2.0 -13.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1082 -2.0 -2.8 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3178 -1.9 -3.4 formyltetrahydrofolate deformylase compare
Psest_1012 -1.9 -4.7 Signal transduction histidine kinase compare
Psest_1686 -1.9 -4.9 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3323 -1.9 -5.6 ribonuclease, Rne/Rng family compare
Psest_1473 -1.9 -6.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1974 -1.9 -2.9 integration host factor, alpha subunit compare
Psest_4219 -1.8 -2.7 DNA polymerase I compare
Psest_3998 -1.7 -6.1 glutamate--cysteine ligase compare
Psest_1295 -1.7 -4.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1474 -1.7 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_0078 -1.7 -1.2 hypothetical protein compare
Psest_0489 -1.7 -1.1 phosphoserine phosphatase SerB compare
Psest_3159 -1.6 -3.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1388 -1.6 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3146 -1.6 -2.3 hypothetical protein compare
Psest_0260 -1.6 -2.0 Cell division protein compare
Psest_0277 -1.6 -1.5 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3438 -1.6 -5.9 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_0520 -1.6 -1.0 hypothetical protein compare
Psest_2645 -1.6 -6.7 Transcriptional regulator compare
Psest_0359 -1.6 -1.9 Transcriptional regulators compare
Psest_2757 -1.5 -1.6 hypothetical protein compare
Psest_1013 -1.5 -1.5 phosphoribosylamine--glycine ligase compare
Psest_0325 -1.5 -9.7 Putative threonine efflux protein compare
Psest_0401 -1.5 -1.9 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_1679 -1.5 -2.1 ribonuclease, Rne/Rng family compare
Psest_2850 -1.5 -1.4 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2025 -1.5 -1.2 cold shock domain protein CspD compare
Psest_1997 -1.5 -2.6 6-phosphogluconolactonase compare
Psest_3927 -1.5 -3.8 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3338 -1.5 -1.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1884 -1.5 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1075 -1.4 -5.9 Predicted transcriptional regulators compare
Psest_0218 -1.4 -3.6 Acyl-CoA hydrolase compare
Psest_0969 -1.4 -1.9 transcription elongation factor GreA compare
Psest_0718 -1.4 -4.0 nicotinate-nucleotide pyrophosphorylase compare
Psest_0958 -1.4 -5.5 Oligoketide cyclase/lipid transport protein compare
Psest_3084 -1.4 -1.9 methyltransferase, putative compare
Psest_2975 -1.4 -2.5 tRNA_Arg_CCT compare
Psest_4010 -1.3 -1.3 peroxiredoxin, OsmC subfamily compare
Psest_3496 -1.3 -1.3 Predicted metal-binding protein compare
Psest_3351 -1.3 -3.2 peptide chain release factor 3 compare
Psest_2954 -1.3 -2.7 hypothetical protein compare
Psest_2458 -1.3 -2.9 MoxR-like ATPases compare
Psest_0715 -1.3 -8.5 NADH dehydrogenase, FAD-containing subunit compare
Psest_3317 -1.2 -3.0 Phosphotransferase System HPr (HPr) Family compare
Psest_1166 -1.2 -2.3 transcriptional regulator, ArgP family compare
Psest_1574 -1.2 -3.0 phenazine biosynthesis protein PhzF family compare
Psest_3843 -1.2 -6.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1805 -1.2 -1.2 integration host factor, beta subunit compare
Psest_2766 -1.2 -1.1 hypothetical protein compare
Psest_3400 -1.2 -1.1 Copper resistance protein D. compare
Psest_3767 -1.1 -3.0 tyrosine recombinase XerC compare
Psest_2935 -1.1 -2.0 hypothetical protein compare
Psest_2018 -1.1 -1.8 Uncharacterized conserved protein compare
Psest_1518 -1.1 -1.2 tRNA_Ser_CGA compare
Psest_0316 -1.1 -2.2 Cytochrome c556 compare
Psest_1496 -1.1 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_0716 -1.1 -1.3 Protein of unknown function (DUF3094). compare
Psest_4049 -1.1 -1.6 hypothetical protein compare
Psest_3872 -1.1 -5.5 FAD/FMN-containing dehydrogenases compare
Psest_0181 -1.1 -4.9 glycine cleavage system T protein compare
Psest_0094 -1.1 -2.2 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1994 -1.1 -2.1 Amidases related to nicotinamidase compare
Psest_1602 -1.0 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4191 -1.0 -2.3 Transcriptional regulator compare
Psest_3077 -1.0 -3.1 Protein of unknown function (DUF3203). compare
Psest_2793 -1.0 -2.1 hypothetical protein compare
Psest_0020 -1.0 -3.2 K+ transport systems, NAD-binding component compare
Psest_3148 -1.0 -1.0 hypothetical protein compare
Psest_1008 -1.0 -0.9 hypothetical protein compare
Psest_3973 -1.0 -1.3 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3756 -1.0 -2.7 hypothetical protein compare
Psest_4330 -1.0 -2.4 Protein of unknown function (DUF2909). compare
Psest_4003 -1.0 -3.9 TIGR00153 family protein compare
Psest_1277 -1.0 -6.1 2-isopropylmalate synthase, yeast type compare
Psest_2716 -1.0 -1.8 ABC-type multidrug transport system, ATPase component compare
Psest_1065 -1.0 -2.3 hypothetical protein compare
Psest_1397 -1.0 -2.8 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_2017 -1.0 -3.7 Predicted acyltransferase compare
Psest_2225 -1.0 -2.1 Diacylglycerol kinase compare
Psest_1541 -1.0 -4.5 TIGR00370 family protein compare
Psest_3850 -1.0 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3213 -0.9 -3.3 acetate kinase compare
Psest_3910 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1647 -0.9 -3.0 Lhr-like helicases compare
Psest_2949 -0.9 -3.6 Aspartyl aminopeptidase compare
Psest_3090 -0.9 -4.6 DNA repair protein RecO compare
Psest_2531 -0.9 -5.7 cytochrome c oxidase accessory protein FixG compare
Psest_3305 -0.9 -4.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1472 -0.9 -4.0 Protein of unknown function (DUF3108). compare
Psest_4363 -0.9 -4.2 ATPases involved in chromosome partitioning compare
Psest_3979 -0.9 -2.0 Fructose-2,6-bisphosphatase compare
Psest_1417 -0.9 -0.9 hypothetical protein compare
Psest_2809 -0.9 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1230 -0.9 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2561 -0.9 -0.8 hypothetical protein compare
Psest_3307 -0.9 -3.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_4082 -0.9 -1.8 hypothetical protein compare
Psest_2626 -0.9 -1.2 Flp pilus assembly protein CpaB compare
Psest_1489 -0.9 -2.7 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_3048 -0.9 -1.6 hypothetical protein compare
Psest_0744 -0.9 -0.7 Uncharacterized conserved protein compare
Psest_1058 -0.9 -1.7 ribosomal-protein-alanine acetyltransferase compare
Psest_3700 -0.9 -1.0 hypothetical protein compare
Psest_2454 -0.9 -1.6 Rhodanese-related sulfurtransferase compare
Psest_0006 -0.9 -2.7 alkyl hydroperoxide reductase, F subunit compare
Psest_4054 -0.8 -2.1 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_0212 -0.8 -1.7 exodeoxyribonuclease V, gamma subunit compare
Psest_3936 -0.8 -2.0 ATP-dependent protease HslVU, peptidase subunit compare
Psest_2405 -0.8 -1.7 NAD-dependent protein deacetylases, SIR2 family compare
Psest_2379 -0.8 -4.5 PAS domain S-box compare
Psest_0533 -0.8 -2.6 Sel1 repeat. compare
Psest_1804 -0.8 -0.9 Superfamily II DNA and RNA helicases compare
Psest_1888 -0.8 -0.7 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2968 -0.8 -2.7 flagellar basal-body rod protein FlgB compare
Psest_0870 -0.8 -4.2 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_3766 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0064 -0.8 -1.9 Transcriptional regulator compare
Psest_2864 -0.8 -1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2939 -0.8 -1.8 Predicted membrane protein compare
Psest_4126 -0.8 -0.9 Predicted peroxiredoxins compare
Psest_2334 -0.8 -5.6 Uncharacterized protein conserved in bacteria compare
Psest_1782 -0.8 -1.6 Predicted transcriptional regulators compare
Psest_0587 -0.8 -1.9 Domain of Unknown Function (DUF326). compare
Psest_0415 -0.8 -2.2 dethiobiotin synthase compare
Psest_0510 -0.8 -2.3 iojap-like ribosome-associated protein compare
Psest_4247 -0.8 -2.0 Serine/threonine protein phosphatase compare
Psest_0675 -0.8 -2.4 Predicted periplasmic lipoprotein compare
Psest_3456 -0.8 -0.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_2470 -0.7 -1.1 hypothetical protein compare
Psest_2349 -0.7 -2.3 urea carboxylase-associated protein 1 compare
Psest_1000 -0.7 -4.0 PAS domain S-box compare
Psest_2724 -0.7 -1.7 hypothetical protein compare
Psest_4209 -0.7 -2.1 Uncharacterized conserved small protein compare
Psest_1306 -0.7 -1.1 hypothetical protein compare
Psest_3110 -0.7 -2.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2327 -0.7 -3.4 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_1242 -0.7 -0.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4193 -0.7 -3.9 Predicted signal transduction protein compare
Psest_1235 -0.7 -3.1 Leucyl aminopeptidase compare
Psest_4095 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3943 -0.7 -1.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0175 -0.7 -3.2 Xaa-Pro aminopeptidase compare
Psest_3419 -0.7 -3.0 Predicted transcriptional regulators compare
Psest_1879 -0.7 -1.4 Trk-type K+ transport systems, membrane components compare


Specific Phenotypes

For 15 genes in this experiment

For nutrient L-Histidine in Pseudomonas stutzeri RCH2

For nutrient L-Histidine across organisms