Experiment set19IT023 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with no fungus

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS03685 +2.6 6.2 Tol system periplasmic component YbgF compare
BPHYT_RS25980 +2.5 2.7 urea carboxylase compare
BPHYT_RS29540 +1.9 2.4 aldolase compare
BPHYT_RS08615 +1.8 2.8 hypothetical protein compare
BPHYT_RS34185 +1.8 7.1 cold-shock protein compare
BPHYT_RS11395 +1.7 2.1 hypothetical protein compare
BPHYT_RS10540 +1.7 1.4 secretion protein compare
BPHYT_RS30365 +1.6 1.4 beta-lactamase compare
BPHYT_RS26675 +1.6 3.1 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS25020 +1.6 2.9 phospholipid-binding protein compare
BPHYT_RS07480 +1.6 2.4 FAD-dependent oxidoreductase compare
BPHYT_RS05255 +1.6 2.0 phage abortive infection protein compare
BPHYT_RS33385 +1.6 2.4 major facilitator superfamily protein compare
BPHYT_RS07935 +1.6 2.5 Rrf2 family transcriptional regulator compare
BPHYT_RS25005 +1.5 1.0 FMN reductase compare
BPHYT_RS04255 +1.5 3.7 diadenosine tetraphosphatase compare
BPHYT_RS14135 +1.5 2.8 phosphate transporter permease subunit PtsA compare
BPHYT_RS13935 +1.4 1.8 mannosyltransferase compare
BPHYT_RS24755 +1.4 1.9 catalase compare
BPHYT_RS16290 +1.3 1.1 hypothetical protein compare
BPHYT_RS08210 +1.3 2.0 membrane protein compare
BPHYT_RS22940 +1.3 1.8 pilus assembly protein TadE compare
BPHYT_RS02575 +1.3 5.1 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS16335 +1.3 1.3 membrane protein compare
BPHYT_RS33030 +1.2 1.2 hypothetical protein compare
BPHYT_RS27850 +1.2 2.1 hemerythrin compare
BPHYT_RS03015 +1.2 0.8 aldolase compare
BPHYT_RS13170 +1.2 2.7 ATPase compare
BPHYT_RS27760 +1.2 2.5 ABC transporter compare
BPHYT_RS00530 +1.2 1.6 hypothetical protein compare
BPHYT_RS10470 +1.2 1.9 hypothetical protein compare
BPHYT_RS15955 +1.2 2.4 methylated-DNA--protein-cysteine methyltransferase compare
BPHYT_RS34815 +1.2 1.9 ABC transporter compare
BPHYT_RS11610 +1.2 2.8 peroxiredoxin compare
BPHYT_RS29720 +1.2 1.2 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS30790 +1.2 1.3 porin compare
BPHYT_RS36570 +1.2 1.6 histone compare
BPHYT_RS22470 +1.2 1.3 hydrolase compare
BPHYT_RS22580 +1.2 4.1 transcriptional regulator compare
BPHYT_RS27890 +1.2 1.4 hypothetical protein compare
BPHYT_RS10285 +1.2 2.6 hypothetical protein compare
BPHYT_RS03905 +1.2 2.3 hypothetical protein compare
BPHYT_RS32735 +1.1 2.2 hypothetical protein compare
BPHYT_RS14140 +1.1 3.1 phosphate transporter permease subunit PstC compare
BPHYT_RS32775 +1.1 3.0 MarR family transcriptional regulator compare
BPHYT_RS20475 +1.1 1.9 hypothetical protein compare
BPHYT_RS35245 +1.1 1.7 hypothetical protein compare
BPHYT_RS15035 +1.1 1.7 hypothetical protein compare
BPHYT_RS22190 +1.1 1.1 nucleoid-structuring protein H-NS compare
BPHYT_RS32860 +1.1 0.9 hypothetical protein compare
BPHYT_RS20715 +1.1 1.5 peptidase compare
BPHYT_RS36555 +1.1 4.3 hypothetical protein compare
BPHYT_RS11310 +1.1 1.1 LysR family transcriptional regulator compare
BPHYT_RS20290 +1.1 4.5 LysR family transcriptional regulator compare
BPHYT_RS34220 +1.1 1.9 L-fucono-1,5-lactonase (from data) compare
BPHYT_RS19260 +1.1 1.1 hypothetical protein compare
BPHYT_RS13105 +1.1 1.3 LacI family transcription regulator compare
BPHYT_RS26230 +1.1 1.0 MFS transporter compare
BPHYT_RS26925 +1.1 1.8 NIPSNAP family containing protein compare
BPHYT_RS30720 +1.1 0.8 hypothetical protein compare
BPHYT_RS05565 +1.0 1.1 membrane protein compare
BPHYT_RS27120 +1.0 1.8 hypothetical protein compare
BPHYT_RS28245 +1.0 1.6 MFS transporter compare
BPHYT_RS11155 +1.0 1.1 hypothetical protein compare
BPHYT_RS27655 +1.0 0.9 potassium transporter compare
BPHYT_RS34545 +1.0 2.3 transcriptional regulator compare
BPHYT_RS34400 +1.0 1.4 hypothetical protein compare
BPHYT_RS07170 +1.0 1.6 ABC transporter compare
BPHYT_RS10240 +1.0 1.1 translation initiation inhibitor compare
BPHYT_RS19955 +1.0 1.2 LysR family transcriptional regulator compare
BPHYT_RS11040 +1.0 0.9 GntR family transcriptional regulator compare
BPHYT_RS36475 +1.0 1.3 hypothetical protein compare
BPHYT_RS05355 +1.0 0.9 Crp/Fnr family transcriptional regulator compare
BPHYT_RS14740 +1.0 3.9 threonine-phosphate decarboxylase compare
BPHYT_RS08590 +1.0 1.9 hypothetical protein compare
BPHYT_RS10265 +1.0 1.7 aminotransferase compare
BPHYT_RS30490 +1.0 0.9 2-haloalkanoic acid dehalogenase compare
BPHYT_RS20150 +1.0 1.3 glycosyl transferase family 1 compare
BPHYT_RS31030 +1.0 1.5 tyrosine protein kinase compare
BPHYT_RS33125 +1.0 1.7 hypothetical protein compare
BPHYT_RS25590 +1.0 1.3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS32830 +1.0 2.0 AraC family transcriptional regulator compare
BPHYT_RS24220 +1.0 0.9 alpha/beta hydrolase compare
BPHYT_RS28030 +1.0 1.5 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS22930 +0.9 1.1 type II secretion system protein compare
BPHYT_RS25560 +0.9 1.3 RNA polymerase sigma factor compare
BPHYT_RS20105 +0.9 1.3 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS25585 +0.9 1.5 membrane protein compare
BPHYT_RS32120 +0.9 2.3 hypothetical protein compare
BPHYT_RS34190 +0.9 2.4 chemotaxis protein compare
BPHYT_RS10860 +0.9 2.3 transcriptional regulator compare
BPHYT_RS26960 +0.9 2.1 LysR family transcriptional regulator compare
BPHYT_RS23855 +0.9 1.7 hypothetical protein compare
BPHYT_RS22485 +0.9 1.4 NADP-dependent aryl-alcohol dehydrogenase compare
BPHYT_RS32055 +0.9 1.8 hypothetical protein compare
BPHYT_RS30890 +0.9 0.9 hypothetical protein compare
BPHYT_RS05085 +0.9 2.0 LysR family transcriptional regulator compare
BPHYT_RS14340 +0.9 5.1 Fis family transcriptional regulator compare
BPHYT_RS28660 +0.9 1.4 polyvinylalcohol dehydrogenase compare
BPHYT_RS26715 +0.9 2.4 GTP-binding protein compare
BPHYT_RS28680 +0.9 1.4 porin compare
BPHYT_RS04170 +0.9 1.6 hypothetical protein compare
BPHYT_RS29250 +0.9 1.6 dihydrodipicolinate synthase compare
BPHYT_RS34680 +0.9 2.8 hypothetical protein compare
BPHYT_RS08340 +0.9 0.3 chemotaxis protein CheY compare
BPHYT_RS33765 +0.9 0.7 membrane protein compare
BPHYT_RS11220 +0.9 2.8 LacI family transcriptional regulator compare
BPHYT_RS28685 +0.9 1.1 GntR family transcriptional regulator compare
BPHYT_RS17030 +0.9 0.8 lipid hydroperoxide peroxidase compare
BPHYT_RS29155 +0.9 1.8 hypothetical protein compare
BPHYT_RS36025 +0.9 1.8 hypothetical protein compare
BPHYT_RS00455 +0.9 2.1 DNA topoisomerase III in PFGI-1-like cluster compare
BPHYT_RS29815 +0.9 1.2 UDP-N-acetyl-D-mannosamine transferase compare
BPHYT_RS05335 +0.9 1.5 AraC family transcriptional regulator compare
BPHYT_RS17680 +0.9 1.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS34605 +0.9 1.6 transcriptional regulator compare
BPHYT_RS05840 +0.9 3.3 hypothetical protein compare
BPHYT_RS24690 +0.8 3.0 ionic transporter y4hA compare
BPHYT_RS06580 +0.8 1.3 carbonic anhydrase compare
BPHYT_RS13035 +0.8 3.3 hypothetical protein compare
BPHYT_RS26730 +0.8 1.8 membrane protein compare
BPHYT_RS31215 +0.8 1.2 antibiotic hydrolase compare
BPHYT_RS25995 +0.8 1.9 2OG-Fe(II) oxygenase compare
BPHYT_RS33355 +0.8 1.7 oxalyl-CoA decarboxylase compare
BPHYT_RS27735 +0.8 1.6 nitroreductase compare
BPHYT_RS16420 +0.8 1.7 copper resistance protein CopD compare
BPHYT_RS32540 +0.8 1.5 hypothetical protein compare
BPHYT_RS04400 +0.8 0.9 Crp/Fnr family transcriptional regulator compare
BPHYT_RS11765 +0.8 0.7 polyamine ABC transporter permease compare
BPHYT_RS34505 +0.8 1.0 hypothetical protein compare
BPHYT_RS16445 +0.8 0.9 RNA helicase compare
BPHYT_RS00770 +0.8 0.7 conjugal transfer protein TraC compare
BPHYT_RS18590 +0.8 0.6 hypothetical protein compare
BPHYT_RS23155 +0.8 0.8 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS24740 +0.8 1.7 RNA polymerase subunit sigma-24 compare
BPHYT_RS08595 +0.8 1.1 multidrug transporter compare
BPHYT_RS03720 +0.8 1.7 malonic semialdehyde reductase compare
BPHYT_RS00585 +0.8 0.9 hypothetical protein compare
BPHYT_RS29620 +0.8 0.5 hypothetical protein compare
BPHYT_RS30910 +0.8 1.2 histidine kinase compare
BPHYT_RS24495 +0.8 1.3 transcriptional regulator compare
BPHYT_RS05320 +0.8 0.7 beta-lactamase compare
BPHYT_RS29165 +0.8 1.5 hypothetical protein compare
BPHYT_RS32865 +0.8 2.9 choloylglycine hydrolase compare
BPHYT_RS09280 +0.8 0.8 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS21840 +0.8 1.5 hypothetical protein compare
BPHYT_RS26285 +0.8 1.3 glycogen debranching protein compare
BPHYT_RS20170 +0.8 1.0 sugar transporter compare
BPHYT_RS35400 +0.8 1.2 ABC transporter compare
BPHYT_RS30130 +0.8 2.2 AraC family transcriptional regulator compare
BPHYT_RS25540 +0.8 1.0 phosphohydrolase compare
BPHYT_RS13555 +0.8 1.1 acyl-CoA dehydrogenase compare
BPHYT_RS12300 +0.8 2.1 haloacid dehalogenase compare
BPHYT_RS03715 +0.8 1.9 4-hydroxybenzoyl-CoA thioesterase compare
BPHYT_RS10340 +0.8 1.2 sensor protein Chase2 compare
BPHYT_RS01825 +0.8 1.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS29715 +0.8 1.8 acylaldehyde oxidase compare
BPHYT_RS36565 +0.8 4.4 hypothetical protein compare
BPHYT_RS33630 +0.8 1.3 chromate transporter compare
BPHYT_RS07665 +0.8 1.4 hypothetical protein compare
BPHYT_RS30205 +0.8 2.6 dehalogenase compare
BPHYT_RS08415 +0.8 1.4 hypothetical protein compare
BPHYT_RS13505 +0.8 1.9 2,4-dienoyl-CoA reductase compare
BPHYT_RS07650 +0.8 2.1 sulfurtransferase compare
BPHYT_RS31320 +0.8 1.0 hypothetical protein compare
BPHYT_RS30915 +0.8 1.3 hypothetical protein compare
BPHYT_RS05290 +0.8 0.7 hypothetical protein compare
BPHYT_RS32225 +0.8 1.1 hypothetical protein compare
BPHYT_RS13325 +0.8 2.0 TetR family transcriptional regulator compare
BPHYT_RS34990 +0.8 1.3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS13040 +0.8 1.4 hypothetical protein compare
BPHYT_RS30085 +0.8 0.5 hypothetical protein compare
BPHYT_RS34905 +0.8 1.1 hypothetical protein compare
BPHYT_RS21960 +0.8 1.2 nucleoside transporter compare
BPHYT_RS06390 +0.8 0.9 ribosome-associated protein IOJAP compare
BPHYT_RS27500 +0.8 1.1 hypothetical protein compare
BPHYT_RS12955 +0.8 1.3 damage-inducible protein compare
BPHYT_RS10410 +0.8 1.9 monooxygenase compare
BPHYT_RS23895 +0.8 1.1 hypothetical protein compare
BPHYT_RS06940 +0.7 1.9 peroxiredoxin compare
BPHYT_RS29235 +0.7 1.0 cell shape determination protein CcmA compare
BPHYT_RS28870 +0.7 1.3 MarR family transcriptional regulator compare
BPHYT_RS26965 +0.7 0.7 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS12320 +0.7 1.4 AraC family transcriptional regulator compare
BPHYT_RS00835 +0.7 1.4 plasmid stabilization protein compare
BPHYT_RS13110 +0.7 1.3 ABC transporter substrate-binding protein compare
BPHYT_RS30930 +0.7 2.0 PAS/PAC sensor signal transduction histidine kinase compare
BPHYT_RS24760 +0.7 1.5 cytochrome B561 compare
BPHYT_RS10715 +0.7 0.8 acyl-CoA dehydrogenase compare
BPHYT_RS20285 +0.7 2.1 MFS transporter compare
BPHYT_RS29065 +0.7 1.2 hypothetical protein compare
BPHYT_RS32345 +0.7 2.3 LrgB family protein compare
BPHYT_RS01755 +0.7 1.4 ATPase compare
BPHYT_RS27390 +0.7 1.0 hydroxyacid dehydrogenase compare
BPHYT_RS21600 +0.7 2.3 3-oxoacyl-ACP reductase compare
BPHYT_RS36600 +0.7 0.9 lytic transglycosylase compare
BPHYT_RS27065 +0.7 0.8 hypothetical protein compare
BPHYT_RS29105 +0.7 1.6 class V aminotransferase compare
BPHYT_RS01945 +0.7 1.3 hypothetical protein compare
BPHYT_RS35205 +0.7 1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in agar plate interaction control experiments