Experiment set19IT022 for Burkholderia phytofirmans PsJN

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Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
BPHYT_RS08960 -5.2 -2.2 threonine synthase compare
BPHYT_RS01455 -5.2 -1.3 peptide deformylase compare
BPHYT_RS07705 -5.0 -2.8 arginine succinyltransferase compare
BPHYT_RS16710 -4.9 -1.2 LysR family transcriptional regulator compare
BPHYT_RS23875 -4.8 -1.2 sugar ABC transporter ATP-binding protein compare
BPHYT_RS03640 -4.6 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS09515 -4.4 -3.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS36385 -4.3 -1.0 TetR family transcriptional regulator compare
BPHYT_RS16245 -4.3 -4.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14190 -4.3 -9.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS08850 -4.1 -1.9 transcriptional regulator compare
BPHYT_RS06610 -4.0 -1.4 triosephosphate isomerase compare
BPHYT_RS06685 -4.0 -1.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12845 -3.9 -16.6 ATPase compare
BPHYT_RS23990 -3.9 -1.3 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS23230 -3.9 -1.3 histidine kinase compare
BPHYT_RS04095 -3.9 -1.3 SAM-dependent methyltransferase PhcB compare
BPHYT_RS16255 -3.8 -2.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS20095 -3.8 -0.9 transcriptional regulator compare
BPHYT_RS16675 -3.8 -2.0 dihydroorotase compare
BPHYT_RS04290 -3.7 -1.8 glycosyl transferase family 2 compare
BPHYT_RS20235 -3.7 -5.9 iron ABC transporter compare
BPHYT_RS16835 -3.5 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14865 -3.5 -2.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS33920 -3.5 -6.8 type II citrate synthase compare
BPHYT_RS15710 -3.4 -1.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS12615 -3.4 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS33150 -3.3 -1.1 beta-lactamase compare
BPHYT_RS06405 -3.3 -4.9 phosphoribosylamine--glycine ligase compare
BPHYT_RS32475 -3.3 -2.0 dihydroxyacetone kinase compare
BPHYT_RS09480 -3.2 -1.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12465 -3.2 -2.1 inositol monophosphatase compare
BPHYT_RS18340 -3.2 -1.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS04285 -3.1 -1.8 rhamnosyltransferase compare
BPHYT_RS01625 -3.1 -2.0 chemotaxis protein CheY compare
BPHYT_RS01620 -3.1 -10.2 sensor histidine kinase compare
BPHYT_RS14855 -3.1 -1.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06400 -3.1 -4.7 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS17945 -3.1 -1.7 cytochrome C biogenesis protein compare
BPHYT_RS16880 -3.1 -1.7 malic enzyme compare
BPHYT_RS12985 -3.1 -1.8 amino acid acetyltransferase compare
BPHYT_RS15415 -3.0 -9.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS16270 -2.9 -2.9 phosphoglycerate kinase compare
BPHYT_RS02590 -2.9 -5.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17520 -2.9 -5.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS28065 -2.9 -0.9 hypothetical protein compare
BPHYT_RS16840 -2.8 -2.0 transketolase compare
BPHYT_RS14550 -2.8 -1.0 tRNA-Asn compare
BPHYT_RS19435 -2.8 -3.3 16S rRNA methyltransferase compare
BPHYT_RS11310 -2.8 -0.9 LysR family transcriptional regulator compare
BPHYT_RS06190 -2.7 -2.4 heptosyltransferase compare
BPHYT_RS06175 -2.7 -2.6 LPS biosynthesis compare
BPHYT_RS14400 -2.7 -3.4 anti-sigma factor compare
BPHYT_RS16340 -2.7 -4.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS33840 -2.7 -8.9 amidophosphoribosyltransferase compare
BPHYT_RS16345 -2.7 -4.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS09500 -2.6 -4.8 glucose-6-phosphate isomerase compare
BPHYT_RS35310 -2.6 -1.9 GCN5 family N-acetyltransferase compare
BPHYT_RS04890 -2.5 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS09620 -2.5 -1.9 aminodeoxychorismate lyase compare
BPHYT_RS04965 -2.5 -6.2 ATP-binding protein compare
BPHYT_RS17920 -2.5 -1.2 protein CyaY compare
BPHYT_RS03280 -2.5 -1.4 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS02135 -2.5 -2.1 glyoxylate reductase compare
BPHYT_RS15620 -2.4 -2.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS01485 -2.4 -0.8 histidine kinase compare
BPHYT_RS36275 -2.4 -1.7 hypothetical protein compare
BPHYT_RS18320 -2.4 -6.5 orotate phosphoribosyltransferase compare
BPHYT_RS06195 -2.4 -1.8 membrane protein compare
BPHYT_RS15075 -2.4 -1.4 dihydrokaempferol 4-reductase compare
BPHYT_RS29695 -2.3 -2.1 hypothetical protein compare
BPHYT_RS32260 -2.3 -1.5 hypothetical protein compare
BPHYT_RS11555 -2.3 -2.1 allantoinase compare
BPHYT_RS12840 -2.2 -2.9 pyruvate dehydrogenase compare
BPHYT_RS03410 -2.2 -1.5 queuine tRNA-ribosyltransferase compare
BPHYT_RS06550 -2.1 -1.9 acetolactate synthase compare
BPHYT_RS33845 -2.1 -3.3 bacteriocin production protein compare
BPHYT_RS22940 -2.1 -1.3 pilus assembly protein TadE compare
BPHYT_RS06530 -2.1 -1.3 membrane protein compare
BPHYT_RS10650 -2.1 -1.3 membrane protein compare
BPHYT_RS20245 -2.1 -4.2 iron ABC transporter substrate-binding protein compare
BPHYT_RS33460 -2.0 -1.0 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS26855 -2.0 -2.7 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS18705 -2.0 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS10165 -2.0 -1.3 transcriptional regulator compare
BPHYT_RS02525 -2.0 -5.4 membrane protein compare
BPHYT_RS02880 -2.0 -1.3 ATP-dependent protease compare
BPHYT_RS34400 -2.0 -2.1 hypothetical protein compare
BPHYT_RS09160 -2.0 -3.9 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS25095 -2.0 -2.1 AraC family transcriptional regulator compare
BPHYT_RS19610 -1.9 -1.4 general secretion pathway protein GspC compare
BPHYT_RS18260 -1.9 -6.8 phenylacetic acid degradation protein compare
BPHYT_RS17620 -1.9 -8.9 cytochrome C compare
BPHYT_RS19260 -1.9 -0.9 hypothetical protein compare
BPHYT_RS11635 -1.9 -1.0 RNA polymerase subunit sigma-24 compare
BPHYT_RS34780 -1.9 -2.9 phytoene synthase compare
BPHYT_RS23940 -1.9 -1.1 GntR family transcriptional regulator compare
BPHYT_RS18250 -1.9 -5.5 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS29840 -1.9 -1.2 polysaccharide biosynthesis protein compare
BPHYT_RS08565 -1.8 -0.6 dihydroorotate dehydrogenase compare
BPHYT_RS36035 -1.8 -2.0 hypothetical protein compare
BPHYT_RS05155 -1.8 -3.5 acetyltransferase GCN5 compare
BPHYT_RS01630 -1.8 -1.6 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS06075 -1.8 -4.2 hypothetical protein compare
BPHYT_RS17035 -1.8 -2.6 sugar kinase compare
BPHYT_RS17625 -1.8 -11.8 cytochrome B compare
BPHYT_RS23265 -1.8 -3.3 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS12725 -1.7 -8.7 regulator compare
BPHYT_RS33580 -1.7 -3.7 geranyltranstransferase compare
BPHYT_RS17530 -1.7 -2.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03645 -1.7 -1.4 tRNA dimethylallyltransferase compare
BPHYT_RS18590 -1.7 -0.7 hypothetical protein compare
BPHYT_RS31900 -1.7 -2.1 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS22265 -1.7 -1.0 hypothetical protein compare
BPHYT_RS30775 -1.7 -1.5 gluconate 2-dehydrogenase compare
BPHYT_RS26955 -1.6 -0.9 succinylglutamate desuccinylase compare
BPHYT_RS16180 -1.6 -0.8 TetR family transcriptional regulator compare
BPHYT_RS14485 -1.6 -3.6 ribonuclease E compare
BPHYT_RS33645 -1.6 -3.9 homoserine kinase compare
BPHYT_RS12925 -1.6 -0.8 exodeoxyribonuclease III compare
BPHYT_RS20225 -1.6 -3.7 taurine catabolism dioxygenase tauD/tfdA compare
BPHYT_RS28620 -1.6 -1.8 enoyl-CoA hydratase compare
BPHYT_RS09330 -1.6 -8.6 phytoene synthase compare
BPHYT_RS09585 -1.6 -1.5 hypothetical protein compare
BPHYT_RS19130 -1.6 -2.9 acetyltransferase compare
BPHYT_RS35955 -1.6 -1.0 hypothetical protein compare
BPHYT_RS28440 -1.6 -1.6 heat shock Hsp20 compare
BPHYT_RS17955 -1.6 -5.2 cytochrome C compare
BPHYT_RS08410 -1.5 -0.9 dehydrogenase compare
BPHYT_RS30040 -1.5 -1.0 hypothetical protein compare
BPHYT_RS16905 -1.5 -2.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS21935 -1.5 -2.2 MarR family transcriptional regulator compare
BPHYT_RS24585 -1.5 -1.0 NUDIX hydrolase compare
BPHYT_RS10725 -1.5 -1.9 polyketide cyclase compare
BPHYT_RS09765 -1.5 -1.8 G-D-S-L family lipolytic protein compare
BPHYT_RS11480 -1.5 -1.8 heme ABC transporter ATP-binding protein compare
BPHYT_RS13245 -1.5 -3.7 hypothetical protein compare
BPHYT_RS33515 -1.4 -6.3 porin compare
BPHYT_RS14845 -1.4 -0.7 cysteine synthase compare
BPHYT_RS03240 -1.4 -2.5 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS28350 -1.4 -1.5 fatty acid desaturase compare
BPHYT_RS19085 -1.4 -3.8 flagellin compare
BPHYT_RS33385 -1.4 -0.9 major facilitator superfamily protein compare
BPHYT_RS17630 -1.4 -3.7 ubiquinol-cytochrome C reductase compare
BPHYT_RS08415 -1.4 -1.4 hypothetical protein compare
BPHYT_RS22910 -1.4 -0.9 hypothetical protein compare
BPHYT_RS23160 -1.4 -3.1 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
BPHYT_RS26465 -1.4 -0.9 metallophosphoesterase compare
BPHYT_RS18835 -1.4 -1.2 flagellar biosynthesis protein FliR compare
BPHYT_RS17395 -1.4 -1.7 anthranilate synthase subunit II compare
BPHYT_RS09280 -1.4 -0.9 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS08060 -1.4 -3.8 ribosome maturation factor RimP compare
BPHYT_RS06325 -1.4 -3.2 ATPase compare
BPHYT_RS28245 -1.4 -1.2 MFS transporter compare
BPHYT_RS01505 -1.4 -1.4 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02765 -1.4 -1.1 cytochrome BD oxidase subunit I compare
BPHYT_RS25020 -1.4 -1.2 phospholipid-binding protein compare
BPHYT_RS31635 -1.4 -1.6 choline dehydrogenase compare
BPHYT_RS27085 -1.3 -1.2 alkylhydroperoxidase compare
BPHYT_RS28360 -1.3 -0.8 carboxymuconolactone decarboxylase compare
BPHYT_RS23275 -1.3 -2.4 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS17490 -1.3 -1.9 haloacid dehalogenase compare
BPHYT_RS35885 -1.3 -2.8 hypothetical protein compare
BPHYT_RS10095 -1.3 -0.8 integrase compare
BPHYT_RS17205 -1.3 -2.0 peroxiredoxin compare
BPHYT_RS18270 -1.3 -5.5 phenylacetic acid degradation protein compare
BPHYT_RS30085 -1.3 -1.0 hypothetical protein compare
BPHYT_RS22400 -1.3 -0.9 hypothetical protein compare
BPHYT_RS35750 -1.3 -0.9 hypothetical protein compare
BPHYT_RS36525 -1.3 -2.6 hypothetical protein compare
BPHYT_RS14105 -1.3 -6.9 exopolyphosphatase compare
BPHYT_RS09315 -1.3 -0.6 chemotaxis protein CheY compare
BPHYT_RS27305 -1.3 -1.2 hypothetical protein compare
BPHYT_RS29485 -1.3 -1.1 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS27560 -1.3 -1.6 histidine kinase compare
BPHYT_RS20775 -1.3 -1.1 3-ketoacyl-ACP reductase compare
BPHYT_RS27030 -1.3 -1.1 transcriptional regulator compare
BPHYT_RS04060 -1.3 -2.5 glycosyl transferase compare
BPHYT_RS04370 -1.3 -0.7 glycosyl transferase compare
BPHYT_RS14180 -1.3 -1.6 membrane protein compare
BPHYT_RS06985 -1.3 -4.0 fumarate hydratase compare
BPHYT_RS36545 -1.3 -2.4 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS02130 -1.3 -2.2 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS01340 -1.3 -2.2 ChrB domain-containing protein compare
BPHYT_RS24095 -1.3 -2.3 membrane protein compare
BPHYT_RS18265 -1.2 -1.8 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS30285 -1.2 -1.8 succinate-semialdehyde dehydrogenase compare
BPHYT_RS33695 -1.2 -1.9 molybdenum ABC transporter ATPase compare
BPHYT_RS03110 -1.2 -1.5 MarR family transcriptional regulator compare
BPHYT_RS27295 -1.2 -1.1 hypothetical protein compare
BPHYT_RS19545 -1.2 -2.9 nuclear protein SET compare
BPHYT_RS18840 -1.2 -4.0 flagellar hook-associated protein FlgL compare
BPHYT_RS31690 -1.2 -1.4 hypothetical protein compare
BPHYT_RS10720 -1.2 -1.0 hypothetical protein compare
BPHYT_RS35120 -1.2 -1.1 hypothetical protein compare
BPHYT_RS25065 -1.2 -0.8 glycine/betaine ABC transporter ATPase compare
BPHYT_RS32930 -1.2 -1.7 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS23910 -1.2 -1.6 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS08955 -1.2 -4.1 homoserine dehydrogenase compare
BPHYT_RS08125 -1.2 -4.4 ATPase compare


Specific Phenotypes

For 1 genes in this experiment