Experiment set19IT021 for Burkholderia phytofirmans PsJN

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Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
BPHYT_RS07705 -5.7 -2.6 arginine succinyltransferase compare
BPHYT_RS16345 -5.5 -3.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS14865 -5.1 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS01455 -5.0 -1.1 peptide deformylase compare
BPHYT_RS36275 -5.0 -1.9 hypothetical protein compare
BPHYT_RS08960 -4.7 -1.8 threonine synthase compare
BPHYT_RS16710 -4.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS09515 -4.7 -2.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS04370 -4.6 -1.0 glycosyl transferase compare
BPHYT_RS12845 -4.6 -13.3 ATPase compare
BPHYT_RS06190 -4.6 -2.8 heptosyltransferase compare
BPHYT_RS16270 -4.5 -2.9 phosphoglycerate kinase compare
BPHYT_RS06550 -4.3 -2.4 acetolactate synthase compare
BPHYT_RS26815 -4.3 -3.1 1-aminocyclopropane-1-carboxylate deaminase compare
BPHYT_RS25080 -4.3 -1.3 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS03640 -4.3 -2.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS23455 -4.3 -1.0 phosphorylase compare
BPHYT_RS29520 -3.9 -0.9 hypothetical protein compare
BPHYT_RS14855 -3.9 -1.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04285 -3.9 -1.5 rhamnosyltransferase compare
BPHYT_RS20150 -3.8 -2.1 glycosyl transferase family 1 compare
BPHYT_RS09500 -3.8 -2.8 glucose-6-phosphate isomerase compare
BPHYT_RS36385 -3.8 -0.9 TetR family transcriptional regulator compare
BPHYT_RS20235 -3.8 -5.1 iron ABC transporter compare
BPHYT_RS02880 -3.8 -1.2 ATP-dependent protease compare
BPHYT_RS16245 -3.7 -3.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06405 -3.7 -5.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS13450 -3.6 -1.2 GntR family transcriptional regulator compare
BPHYT_RS33060 -3.6 -1.9 hypothetical protein compare
BPHYT_RS23230 -3.6 -1.1 histidine kinase compare
BPHYT_RS06685 -3.5 -1.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12985 -3.5 -1.6 amino acid acetyltransferase compare
BPHYT_RS09825 -3.5 -1.5 Fe-S protein compare
BPHYT_RS36090 -3.5 -2.0 hypothetical protein compare
BPHYT_RS30750 -3.4 -1.3 GntR family transcriptional regulator compare
BPHYT_RS22265 -3.4 -1.1 hypothetical protein compare
BPHYT_RS33515 -3.4 -9.8 porin compare
BPHYT_RS16255 -3.4 -2.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS15620 -3.4 -3.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS04290 -3.3 -1.5 glycosyl transferase family 2 compare
BPHYT_RS16675 -3.3 -1.7 dihydroorotase compare
BPHYT_RS14190 -3.3 -7.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS03725 -3.3 -1.2 serine hydroxymethyltransferase compare
BPHYT_RS12465 -3.2 -1.4 inositol monophosphatase compare
BPHYT_RS24630 -3.2 -1.8 (2Fe-2S)-binding protein compare
BPHYT_RS14485 -3.2 -4.5 ribonuclease E compare
BPHYT_RS13605 -3.1 -0.7 tRNA-Pro compare
BPHYT_RS09160 -3.1 -3.0 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS13610 -3.1 -3.1 MerR family transcriptional regulator compare
BPHYT_RS16905 -3.0 -3.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS04335 -3.0 -1.6 membrane protein compare
BPHYT_RS26965 -3.0 -0.9 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS20245 -2.9 -3.0 iron ABC transporter substrate-binding protein compare
BPHYT_RS02525 -2.9 -7.6 membrane protein compare
BPHYT_RS09620 -2.8 -1.5 aminodeoxychorismate lyase compare
BPHYT_RS18910 -2.8 -1.5 FlgN compare
BPHYT_RS23910 -2.8 -1.5 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS02975 -2.7 -1.6 membrane protein compare
BPHYT_RS06325 -2.7 -4.4 ATPase compare
BPHYT_RS01625 -2.7 -1.6 chemotaxis protein CheY compare
BPHYT_RS16880 -2.7 -1.4 malic enzyme compare
BPHYT_RS08665 -2.7 -1.0 hypothetical protein compare
BPHYT_RS13320 -2.7 -1.0 allantoate amidohydrolase compare
BPHYT_RS33920 -2.6 -4.9 type II citrate synthase compare
BPHYT_RS18870 -2.6 -5.1 flagellar basal body rod protein FlgG compare
BPHYT_RS05705 -2.6 -0.8 hypothetical protein compare
BPHYT_RS14195 -2.6 -2.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS23650 -2.6 -0.8 hypothetical protein compare
BPHYT_RS22870 -2.6 -1.4 copper transporter compare
BPHYT_RS17520 -2.6 -4.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS26685 -2.6 -0.8 precorrin-8X methylmutase compare
BPHYT_RS09905 -2.5 -1.1 hypothetical protein compare
BPHYT_RS31910 -2.5 -1.0 hypothetical protein compare
BPHYT_RS04095 -2.5 -1.0 SAM-dependent methyltransferase PhcB compare
BPHYT_RS15415 -2.4 -8.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS16840 -2.4 -1.6 transketolase compare
BPHYT_RS10345 -2.4 -0.9 flagellar motor protein MotB compare
BPHYT_RS17630 -2.4 -5.1 ubiquinol-cytochrome C reductase compare
BPHYT_RS34655 -2.4 -1.3 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS33845 -2.4 -2.4 bacteriocin production protein compare
BPHYT_RS17530 -2.4 -2.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS33580 -2.4 -4.2 geranyltranstransferase compare
BPHYT_RS15075 -2.4 -1.4 dihydrokaempferol 4-reductase compare
BPHYT_RS36130 -2.3 -1.0 hypothetical protein compare
BPHYT_RS01620 -2.3 -6.5 sensor histidine kinase compare
BPHYT_RS28920 -2.3 -1.0 cellulose synthase compare
BPHYT_RS28255 -2.3 -1.2 hypothetical protein compare
BPHYT_RS18935 -2.3 -8.8 flagellar biosynthesis regulator FlhF compare
BPHYT_RS18945 -2.3 -5.5 flagellar biosynthesis protein FlhB compare
BPHYT_RS34780 -2.3 -2.6 phytoene synthase compare
BPHYT_RS19335 -2.3 -3.2 hypothetical protein compare
BPHYT_RS17525 -2.3 -1.7 glutaredoxin compare
BPHYT_RS29855 -2.2 -0.9 protein-tyrosine-phosphatase compare
BPHYT_RS17165 -2.2 -3.5 cell division protein ZapD compare
BPHYT_RS23155 -2.2 -0.9 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS24500 -2.2 -1.4 histidine kinase compare
BPHYT_RS12615 -2.2 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS18705 -2.2 -1.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS18340 -2.2 -1.4 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS27455 -2.2 -1.4 rod shape-determining protein MreB compare
BPHYT_RS06990 -2.2 -1.1 membrane protein compare
BPHYT_RS18900 -2.2 -10.4 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS20225 -2.2 -4.4 taurine catabolism dioxygenase tauD/tfdA compare
BPHYT_RS09765 -2.2 -1.6 G-D-S-L family lipolytic protein compare
BPHYT_RS08245 -2.1 -4.6 anti-sigma factor compare
BPHYT_RS18860 -2.1 -4.0 flagellar P-ring protein FlgI compare
BPHYT_RS33645 -2.1 -4.0 homoserine kinase compare
BPHYT_RS21495 -2.1 -0.9 ABC transporter compare
BPHYT_RS17265 -2.1 -0.9 cell division protein compare
BPHYT_RS26470 -2.1 -0.8 MFS transporter compare
BPHYT_RS08850 -2.1 -1.2 transcriptional regulator compare
BPHYT_RS18250 -2.1 -5.4 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS18925 -2.1 -7.6 RNA polymerase sigma70 compare
BPHYT_RS06075 -2.1 -5.9 hypothetical protein compare
BPHYT_RS16340 -2.1 -2.6 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS19610 -2.0 -1.2 general secretion pathway protein GspC compare
BPHYT_RS18880 -2.0 -7.9 flagellar hook protein FlgE compare
BPHYT_RS12265 -2.0 -1.1 alanine acetyltransferase compare
BPHYT_RS23270 -2.0 -0.9 enoyl-CoA hydratase compare
BPHYT_RS28365 -2.0 -1.1 Germin subfamily 1 member 15 compare
BPHYT_RS25285 -2.0 -2.8 AraC family transcriptional regulator compare
BPHYT_RS18260 -2.0 -5.3 phenylacetic acid degradation protein compare
BPHYT_RS17625 -2.0 -12.0 cytochrome B compare
BPHYT_RS33695 -2.0 -2.4 molybdenum ABC transporter ATPase compare
BPHYT_RS33840 -2.0 -4.2 amidophosphoribosyltransferase compare
BPHYT_RS07475 -2.0 -1.1 nitrate reductase compare
BPHYT_RS16065 -2.0 -0.8 LacI family transcriptional regulator compare
BPHYT_RS08060 -2.0 -3.6 ribosome maturation factor RimP compare
BPHYT_RS18795 -2.0 -7.7 flagellar export protein FliJ compare
BPHYT_RS31020 -2.0 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS24175 -1.9 -3.0 C4-dicarboxylate ABC transporter compare
BPHYT_RS17030 -1.9 -0.7 lipid hydroperoxide peroxidase compare
BPHYT_RS20155 -1.9 -1.0 hypothetical protein compare
BPHYT_RS17380 -1.9 -6.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS18855 -1.9 -4.8 flagellar rod assembly protein FlgJ compare
BPHYT_RS01660 -1.9 -2.1 hypothetical protein compare
BPHYT_RS25020 -1.9 -1.2 phospholipid-binding protein compare
BPHYT_RS18835 -1.9 -1.2 flagellar biosynthesis protein FliR compare
BPHYT_RS21340 -1.9 -2.6 2OG-Fe(II) oxygenase compare
BPHYT_RS02005 -1.9 -1.4 diguanylate phosphodiesterase compare
BPHYT_RS18320 -1.9 -3.6 orotate phosphoribosyltransferase compare
BPHYT_RS30515 -1.9 -1.5 sorbose dehydrogenase compare
BPHYT_RS36360 -1.8 -1.8 hypothetical protein compare
BPHYT_RS18810 -1.8 -6.7 flagellar motor switch protein FliM compare
BPHYT_RS18885 -1.8 -4.3 flagellar basal body rod modification protein FlgD compare
BPHYT_RS15890 -1.8 -0.7 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS33150 -1.8 -0.8 beta-lactamase compare
BPHYT_RS03645 -1.8 -1.3 tRNA dimethylallyltransferase compare
BPHYT_RS30610 -1.8 -1.7 major facilitator transporter compare
BPHYT_RS06195 -1.8 -1.4 membrane protein compare
BPHYT_RS02130 -1.8 -1.8 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS18790 -1.8 -5.1 ATP synthase compare
BPHYT_RS35675 -1.8 -1.4 short-chain dehydrogenase compare
BPHYT_RS29695 -1.8 -1.5 hypothetical protein compare
BPHYT_RS08340 -1.8 -0.4 chemotaxis protein CheY compare
BPHYT_RS24565 -1.8 -2.4 membrane protein compare
BPHYT_RS26080 -1.8 -0.8 ABC transporter ATPase compare
BPHYT_RS18775 -1.8 -8.1 flagellar M-ring protein FliF compare
BPHYT_RS13935 -1.8 -1.2 mannosyltransferase compare
BPHYT_RS18805 -1.8 -6.3 flagellar basal body protein FliL compare
BPHYT_RS18255 -1.8 -1.6 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS18825 -1.8 -2.7 flagellar biosynthesis protein FliP compare
BPHYT_RS06400 -1.8 -4.5 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS28705 -1.8 -0.9 IclR family transcriptional regulator compare
BPHYT_RS30800 -1.8 -1.2 MFS transporter compare
BPHYT_RS09585 -1.8 -1.2 hypothetical protein compare
BPHYT_RS35230 -1.7 -1.0 type 11 methyltransferase compare
BPHYT_RS17760 -1.7 -3.3 ABC transporter permease compare
BPHYT_RS18890 -1.7 -6.2 flagellar basal body rod protein FlgC compare
BPHYT_RS18940 -1.7 -6.0 flagellar biosynthesis protein FlhA compare
BPHYT_RS36525 -1.7 -2.4 hypothetical protein compare
BPHYT_RS33535 -1.7 -11.3 RNA polymerase sigma factor RpoD compare
BPHYT_RS12725 -1.7 -8.5 regulator compare
BPHYT_RS02590 -1.7 -4.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS20970 -1.7 -1.1 hypothetical protein compare
BPHYT_RS18785 -1.7 -1.3 flagellar assembly protein FliH compare
BPHYT_RS02600 -1.7 -1.3 glutaredoxin compare
BPHYT_RS17955 -1.7 -3.9 cytochrome C compare
BPHYT_RS19010 -1.7 -4.0 flagellar motor protein MotB compare
BPHYT_RS35835 -1.7 -2.3 hypothetical protein compare
BPHYT_RS14245 -1.7 -0.9 membrane protein compare
BPHYT_RS25780 -1.7 -0.6 DeoR faimly transcriptional regulator compare
BPHYT_RS10015 -1.7 -2.5 NAD(P)H dehydrogenase (quinone) compare
BPHYT_RS25885 -1.7 -1.3 type III secretion protein compare
BPHYT_RS04965 -1.7 -4.4 ATP-binding protein compare
BPHYT_RS19305 -1.7 -3.7 ATP-dependent DNA helicase Rep compare
BPHYT_RS06080 -1.7 -1.6 endonuclease IV compare
BPHYT_RS08415 -1.7 -1.7 hypothetical protein compare
BPHYT_RS25220 -1.7 -1.5 ferredoxin oxidoreductase compare
BPHYT_RS31635 -1.7 -1.3 choline dehydrogenase compare
BPHYT_RS10695 -1.6 -1.0 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS06985 -1.6 -3.1 fumarate hydratase compare
BPHYT_RS16835 -1.6 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS18780 -1.6 -3.8 flagellar motor switch protein FliG compare
BPHYT_RS12510 -1.6 -1.1 RNA-binding protein compare
BPHYT_RS03235 -1.6 -1.7 enoyl-CoA hydratase compare
BPHYT_RS15015 -1.6 -0.7 ArsR family transcriptional regulator compare
BPHYT_RS18800 -1.6 -3.7 flagellar hook-length control protein compare
BPHYT_RS04385 -1.6 -2.2 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS05155 -1.6 -3.8 acetyltransferase GCN5 compare


Specific Phenotypes

For 6 genes in this experiment