Experiment set19IT017 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14195 -5.8 -3.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS16270 -5.6 -3.8 phosphoglycerate kinase compare
BPHYT_RS01455 -5.3 -1.4 peptide deformylase compare
BPHYT_RS08960 -5.3 -2.4 threonine synthase compare
BPHYT_RS16880 -5.2 -2.3 malic enzyme compare
BPHYT_RS17095 -5.2 -3.3 proline--tRNA ligase compare
BPHYT_RS15620 -4.9 -4.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08060 -4.9 -7.5 ribosome maturation factor RimP compare
BPHYT_RS17240 -4.5 -1.2 cell division protein FtsW compare
BPHYT_RS09515 -4.2 -4.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS08850 -4.1 -2.1 transcriptional regulator compare
BPHYT_RS16835 -4.1 -6.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06610 -4.1 -1.5 triosephosphate isomerase compare
BPHYT_RS17620 -4.0 -12.1 cytochrome C compare
BPHYT_RS16255 -4.0 -2.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS01620 -4.0 -10.0 sensor histidine kinase compare
BPHYT_RS03725 -3.8 -1.7 serine hydroxymethyltransferase compare
BPHYT_RS12465 -3.8 -1.8 inositol monophosphatase compare
BPHYT_RS29085 -3.7 -1.8 LysR family transcriptional regulator compare
BPHYT_RS14755 -3.7 -2.5 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS04890 -3.5 -1.3 cobalamin biosynthesis protein CobD compare
BPHYT_RS13605 -3.5 -0.9 tRNA-Pro compare
BPHYT_RS14865 -3.5 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS16345 -3.4 -5.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS18320 -3.4 -8.9 orotate phosphoribosyltransferase compare
BPHYT_RS33515 -3.4 -9.6 porin compare
BPHYT_RS17520 -3.4 -5.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS01625 -3.4 -2.3 chemotaxis protein CheY compare
BPHYT_RS17625 -3.4 -14.8 cytochrome B compare
BPHYT_RS14190 -3.3 -6.7 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16675 -3.2 -2.4 dihydroorotase compare
BPHYT_RS02590 -3.2 -6.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33920 -3.2 -7.7 type II citrate synthase compare
BPHYT_RS15415 -3.2 -11.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS12845 -3.1 -12.5 ATPase compare
BPHYT_RS12055 -3.1 -12.4 phosphoenolpyruvate synthase compare
BPHYT_RS06405 -3.0 -5.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS28575 -3.0 -1.1 transcriptional regulator compare
BPHYT_RS17630 -3.0 -6.6 ubiquinol-cytochrome C reductase compare
BPHYT_RS14855 -2.9 -1.8 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS09500 -2.8 -6.3 glucose-6-phosphate isomerase compare
BPHYT_RS18875 -2.8 -4.8 flagellar basal body rod protein FlgF compare
BPHYT_RS03645 -2.8 -2.2 tRNA dimethylallyltransferase compare
BPHYT_RS03640 -2.7 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16710 -2.7 -1.2 LysR family transcriptional regulator compare
BPHYT_RS16840 -2.7 -2.6 transketolase compare
BPHYT_RS18910 -2.7 -1.6 FlgN compare
BPHYT_RS04965 -2.6 -9.6 ATP-binding protein compare
BPHYT_RS26435 -2.5 -1.6 hypothetical protein compare
BPHYT_RS33840 -2.5 -7.4 amidophosphoribosyltransferase compare
BPHYT_RS18795 -2.5 -6.2 flagellar export protein FliJ compare
BPHYT_RS03410 -2.5 -1.7 queuine tRNA-ribosyltransferase compare
BPHYT_RS14485 -2.4 -4.5 ribonuclease E compare
BPHYT_RS34780 -2.4 -4.3 phytoene synthase compare
BPHYT_RS18870 -2.4 -7.4 flagellar basal body rod protein FlgG compare
BPHYT_RS18895 -2.3 -4.6 flagellar basal body rod protein FlgB compare
BPHYT_RS36470 -2.3 -1.4 hypothetical protein compare
BPHYT_RS17955 -2.3 -3.8 cytochrome C compare
BPHYT_RS36385 -2.3 -0.8 TetR family transcriptional regulator compare
BPHYT_RS25500 -2.3 -1.7 hypothetical protein compare
BPHYT_RS09480 -2.3 -1.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS16905 -2.2 -2.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS09160 -2.2 -6.5 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS05010 -2.2 -4.2 RpiR family transcriptional regulator compare
BPHYT_RS32260 -2.2 -1.7 hypothetical protein compare
BPHYT_RS18900 -2.1 -13.1 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS06375 -2.1 -3.9 ribonuclease compare
BPHYT_RS02860 -2.1 -0.8 membrane protein compare
BPHYT_RS06325 -2.1 -4.9 ATPase compare
BPHYT_RS18785 -2.1 -1.8 flagellar assembly protein FliH compare
BPHYT_RS18800 -2.0 -8.1 flagellar hook-length control protein compare
BPHYT_RS18255 -2.0 -2.1 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS18890 -2.0 -6.2 flagellar basal body rod protein FlgC compare
BPHYT_RS02765 -2.0 -1.4 cytochrome BD oxidase subunit I compare
BPHYT_RS08415 -2.0 -2.5 hypothetical protein compare
BPHYT_RS18790 -1.9 -7.5 ATP synthase compare
BPHYT_RS18880 -1.9 -9.9 flagellar hook protein FlgE compare
BPHYT_RS06175 -1.9 -3.2 LPS biosynthesis compare
BPHYT_RS18885 -1.9 -4.0 flagellar basal body rod modification protein FlgD compare
BPHYT_RS17530 -1.9 -3.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18935 -1.9 -8.0 flagellar biosynthesis regulator FlhF compare
BPHYT_RS18840 -1.9 -7.6 flagellar hook-associated protein FlgL compare
BPHYT_RS11635 -1.9 -1.1 RNA polymerase subunit sigma-24 compare
BPHYT_RS34490 -1.9 -1.0 hypothetical protein compare
BPHYT_RS18855 -1.9 -6.9 flagellar rod assembly protein FlgJ compare
BPHYT_RS06190 -1.9 -1.9 heptosyltransferase compare
BPHYT_RS06790 -1.9 -7.6 hypothetical protein compare
BPHYT_RS18825 -1.8 -4.0 flagellar biosynthesis protein FliP compare
BPHYT_RS16340 -1.8 -5.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS18810 -1.8 -6.9 flagellar motor switch protein FliM compare
BPHYT_RS08565 -1.8 -0.6 dihydroorotate dehydrogenase compare
BPHYT_RS18940 -1.8 -6.4 flagellar biosynthesis protein FlhA compare
BPHYT_RS20245 -1.8 -5.7 iron ABC transporter substrate-binding protein compare
BPHYT_RS28360 -1.8 -1.1 carboxymuconolactone decarboxylase compare
BPHYT_RS18845 -1.8 -8.5 flagellar hook-associated protein FlgK compare
BPHYT_RS18265 -1.8 -2.4 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS31050 -1.7 -1.1 epimerase compare
BPHYT_RS02975 -1.7 -2.3 membrane protein compare
BPHYT_RS06985 -1.7 -5.5 fumarate hydratase compare
BPHYT_RS20235 -1.7 -4.0 iron ABC transporter compare
BPHYT_RS05655 -1.7 -2.5 membrane protein compare
BPHYT_RS33580 -1.7 -3.2 geranyltranstransferase compare
BPHYT_RS26925 -1.7 -1.7 NIPSNAP family containing protein compare
BPHYT_RS27295 -1.7 -1.6 hypothetical protein compare
BPHYT_RS18945 -1.7 -4.3 flagellar biosynthesis protein FlhB compare
BPHYT_RS22940 -1.7 -1.0 pilus assembly protein TadE compare
BPHYT_RS11795 -1.6 -1.0 membrane protein compare
BPHYT_RS28930 -1.6 -1.0 chromosome partitioning protein ParA compare
BPHYT_RS15075 -1.6 -1.3 dihydrokaempferol 4-reductase compare
BPHYT_RS06410 -1.6 -1.5 transcriptional regulator compare
BPHYT_RS10400 -1.6 -1.0 taurine ABC transporter permease compare
BPHYT_RS29485 -1.6 -1.7 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS18925 -1.6 -4.3 RNA polymerase sigma70 compare
BPHYT_RS06990 -1.6 -0.8 membrane protein compare
BPHYT_RS33645 -1.6 -4.3 homoserine kinase compare
BPHYT_RS18340 -1.6 -1.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS03830 -1.6 -2.1 hypothetical protein compare
BPHYT_RS29855 -1.6 -1.0 protein-tyrosine-phosphatase compare
BPHYT_RS18835 -1.6 -1.0 flagellar biosynthesis protein FliR compare
BPHYT_RS02760 -1.6 -1.1 cytochrome BD oxidase subunit II compare
BPHYT_RS14845 -1.6 -0.9 cysteine synthase compare
BPHYT_RS12985 -1.5 -1.4 amino acid acetyltransferase compare
BPHYT_RS33890 -1.5 -5.6 fimbrial protein FimV compare
BPHYT_RS12145 -1.5 -6.3 methionine aminopeptidase compare
BPHYT_RS31255 -1.5 -1.1 cytochrome B561 compare
BPHYT_RS33460 -1.5 -0.9 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS28485 -1.5 -0.9 GntR family transcriptional regulator compare
BPHYT_RS30085 -1.5 -1.2 hypothetical protein compare
BPHYT_RS10470 -1.5 -1.7 hypothetical protein compare
BPHYT_RS11040 -1.5 -0.8 GntR family transcriptional regulator compare
BPHYT_RS19120 -1.5 -4.0 3-oxoacyl-ACP synthase compare
BPHYT_RS26750 -1.5 -1.9 aldolase compare
BPHYT_RS06320 -1.4 -1.9 chemotaxis protein CheY compare
BPHYT_RS17380 -1.4 -6.0 ribulose-phosphate 3-epimerase compare
BPHYT_RS19115 -1.4 -1.9 acyl carrier protein compare
BPHYT_RS35885 -1.4 -1.9 hypothetical protein compare
BPHYT_RS18270 -1.4 -4.5 phenylacetic acid degradation protein compare
BPHYT_RS24665 -1.4 -1.6 ABC transporter permease compare
BPHYT_RS18830 -1.4 -7.5 flagellar biosynthesis protein FliQ compare
BPHYT_RS27250 -1.4 -2.0 NAD-dependent epimerase/dehydratase compare
BPHYT_RS17185 -1.4 -3.8 N-acetylglutamate synthase compare
BPHYT_RS33535 -1.4 -10.1 RNA polymerase sigma factor RpoD compare
BPHYT_RS13645 -1.4 -9.7 threonine--tRNA ligase compare
BPHYT_RS20025 -1.4 -1.9 crotonase compare
BPHYT_RS18775 -1.4 -6.8 flagellar M-ring protein FliF compare
BPHYT_RS12990 -1.4 -1.9 iron transporter compare
BPHYT_RS13160 -1.4 -1.2 membrane protein compare
BPHYT_RS17525 -1.4 -1.1 glutaredoxin compare
BPHYT_RS00980 -1.4 -0.8 GCN5 family acetyltransferase compare
BPHYT_RS02525 -1.3 -4.0 membrane protein compare
BPHYT_RS20545 -1.3 -1.5 hypothetical protein compare
BPHYT_RS12725 -1.3 -8.9 regulator compare
BPHYT_RS03090 -1.3 -1.2 hypothetical protein compare
BPHYT_RS10065 -1.3 -1.4 cytochrome C oxidase subunit I compare
BPHYT_RS18990 -1.3 -1.7 chemotaxis protein compare
BPHYT_RS33150 -1.3 -0.9 beta-lactamase compare
BPHYT_RS18865 -1.3 -2.3 flagellar L-ring protein FlgH compare
BPHYT_RS00295 -1.3 -2.0 hypothetical protein compare
BPHYT_RS02130 -1.3 -2.7 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS01435 -1.3 -11.1 LysR family transcriptional regulator compare
BPHYT_RS12840 -1.3 -2.2 pyruvate dehydrogenase compare
BPHYT_RS18805 -1.3 -4.4 flagellar basal body protein FliL compare
BPHYT_RS07760 -1.3 -1.4 diguanylate phosphodiesterase compare
BPHYT_RS20865 -1.3 -1.9 2-hydroxyacid dehydrogenase compare
BPHYT_RS15710 -1.3 -0.7 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS14105 -1.3 -6.4 exopolyphosphatase compare
BPHYT_RS34175 -1.3 -3.1 N-acylglucosamine 2-epimerase compare
BPHYT_RS18970 -1.3 -6.3 chemotaxis protein compare
BPHYT_RS05155 -1.3 -4.4 acetyltransferase GCN5 compare
BPHYT_RS28635 -1.2 -2.4 hypothetical protein compare
BPHYT_RS33885 -1.2 -6.5 tRNA pseudouridine synthase A compare
BPHYT_RS02755 -1.2 -0.8 cyd operon protein YbgT compare
BPHYT_RS04910 -1.2 -1.1 phenylacetic acid degradation protein compare
BPHYT_RS32200 -1.2 -1.1 lytic transglycosylase compare
BPHYT_RS06600 -1.2 -1.0 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS33695 -1.2 -2.9 molybdenum ABC transporter ATPase compare
BPHYT_RS36365 -1.2 -1.2 hypothetical protein compare
BPHYT_RS13080 -1.2 -1.2 hypothetical protein compare
BPHYT_RS09000 -1.2 -1.0 competence protein ComE compare
BPHYT_RS18860 -1.2 -3.7 flagellar P-ring protein FlgI compare
BPHYT_RS10095 -1.2 -1.8 integrase compare
BPHYT_RS17035 -1.2 -2.1 sugar kinase compare
BPHYT_RS33850 -1.2 -0.8 sporulation protein compare
BPHYT_RS08665 -1.2 -0.9 hypothetical protein compare
BPHYT_RS09905 -1.2 -1.1 hypothetical protein compare
BPHYT_RS08235 -1.2 -0.6 nucleoprotein, Hfg, host factor I compare
BPHYT_RS02610 -1.2 -2.0 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS36545 -1.2 -2.0 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS12060 -1.2 -1.2 hypothetical protein compare
BPHYT_RS08125 -1.2 -5.6 ATPase compare
BPHYT_RS18765 -1.2 -2.9 flagellar biosynthesis protein FliS compare
BPHYT_RS07255 -1.2 -1.6 4-oxalocrotonate decarboxylase compare
BPHYT_RS18250 -1.2 -4.0 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS07860 -1.2 -1.5 benzoate 1,2-dioxygenase subunit beta compare
BPHYT_RS20885 -1.2 -1.4 nuclear protein SET compare
BPHYT_RS10725 -1.2 -1.8 polyketide cyclase compare
BPHYT_RS11270 -1.1 -4.0 hypothetical protein compare
BPHYT_RS31650 -1.1 -1.5 FAD-binding protein compare
BPHYT_RS12150 -1.1 -6.1 PII uridylyl-transferase compare
BPHYT_RS32365 -1.1 -2.5 branched-chain amino acid ABC transporter substrate-binding protein compare


Specific Phenotypes

For 4 genes in this experiment