Experiment set19IT014 for Burkholderia phytofirmans PsJN

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16835 -6.3 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16270 -6.2 -3.2 phosphoglycerate kinase compare
BPHYT_RS17890 -5.4 -2.0 shikimate kinase compare
BPHYT_RS08060 -5.1 -9.2 ribosome maturation factor RimP compare
BPHYT_RS16710 -4.9 -1.1 LysR family transcriptional regulator compare
BPHYT_RS19985 -4.6 -1.0 CoA-transferase compare
BPHYT_RS17240 -4.3 -0.9 cell division protein FtsW compare
BPHYT_RS17630 -4.3 -5.9 ubiquinol-cytochrome C reductase compare
BPHYT_RS14855 -4.2 -1.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS01620 -4.0 -6.1 sensor histidine kinase compare
BPHYT_RS17625 -4.0 -15.8 cytochrome B compare
BPHYT_RS06610 -3.9 -1.2 triosephosphate isomerase compare
BPHYT_RS17095 -3.9 -2.8 proline--tRNA ligase compare
BPHYT_RS06405 -3.9 -6.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS02590 -3.9 -6.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14485 -3.8 -4.0 ribonuclease E compare
BPHYT_RS17620 -3.7 -9.5 cytochrome C compare
BPHYT_RS08850 -3.7 -1.6 transcriptional regulator compare
BPHYT_RS16255 -3.7 -2.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16675 -3.6 -1.8 dihydroorotase compare
BPHYT_RS09515 -3.6 -3.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS01455 -3.5 -1.1 peptide deformylase compare
BPHYT_RS12465 -3.5 -1.4 inositol monophosphatase compare
BPHYT_RS03725 -3.4 -1.3 serine hydroxymethyltransferase compare
BPHYT_RS33920 -3.4 -7.6 type II citrate synthase compare
BPHYT_RS12055 -3.4 -16.8 phosphoenolpyruvate synthase compare
BPHYT_RS13605 -3.3 -0.7 tRNA-Pro compare
BPHYT_RS15710 -3.3 -1.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS14670 -3.3 -1.2 hypothetical protein compare
BPHYT_RS12845 -3.3 -8.2 ATPase compare
BPHYT_RS15075 -3.2 -1.8 dihydrokaempferol 4-reductase compare
BPHYT_RS18320 -3.1 -7.3 orotate phosphoribosyltransferase compare
BPHYT_RS34780 -3.1 -4.2 phytoene synthase compare
BPHYT_RS16345 -3.1 -3.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS08960 -3.1 -1.6 threonine synthase compare
BPHYT_RS14190 -3.0 -6.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS01625 -3.0 -1.7 chemotaxis protein CheY compare
BPHYT_RS15415 -2.9 -9.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS09500 -2.9 -5.2 glucose-6-phosphate isomerase compare
BPHYT_RS18790 -2.9 -7.6 ATP synthase compare
BPHYT_RS14735 -2.9 -1.1 hypothetical protein compare
BPHYT_RS18895 -2.9 -5.0 flagellar basal body rod protein FlgB compare
BPHYT_RS33840 -2.8 -8.5 amidophosphoribosyltransferase compare
BPHYT_RS18825 -2.8 -4.9 flagellar biosynthesis protein FliP compare
BPHYT_RS00815 -2.8 -1.1 hypothetical protein compare
BPHYT_RS20235 -2.7 -5.4 iron ABC transporter compare
BPHYT_RS18785 -2.7 -1.6 flagellar assembly protein FliH compare
BPHYT_RS23270 -2.7 -0.8 enoyl-CoA hydratase compare
BPHYT_RS04290 -2.7 -1.5 glycosyl transferase family 2 compare
BPHYT_RS16840 -2.7 -1.7 transketolase compare
BPHYT_RS18875 -2.7 -6.7 flagellar basal body rod protein FlgF compare
BPHYT_RS33515 -2.7 -6.9 porin compare
BPHYT_RS25780 -2.7 -0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS17520 -2.7 -4.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS02130 -2.6 -2.5 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS18945 -2.6 -5.9 flagellar biosynthesis protein FlhB compare
BPHYT_RS03640 -2.6 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS15620 -2.5 -3.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS18865 -2.5 -3.3 flagellar L-ring protein FlgH compare
BPHYT_RS33150 -2.5 -1.0 beta-lactamase compare
BPHYT_RS18880 -2.5 -9.1 flagellar hook protein FlgE compare
BPHYT_RS14755 -2.5 -2.7 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS18800 -2.5 -6.3 flagellar hook-length control protein compare
BPHYT_RS13470 -2.5 -0.9 arylsulfate sulfotransferase compare
BPHYT_RS18900 -2.5 -10.0 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS18810 -2.4 -7.6 flagellar motor switch protein FliM compare
BPHYT_RS04285 -2.4 -1.5 rhamnosyltransferase compare
BPHYT_RS07705 -2.4 -2.4 arginine succinyltransferase compare
BPHYT_RS06990 -2.4 -1.2 membrane protein compare
BPHYT_RS02755 -2.4 -0.9 cyd operon protein YbgT compare
BPHYT_RS18855 -2.4 -4.8 flagellar rod assembly protein FlgJ compare
BPHYT_RS04335 -2.4 -1.4 membrane protein compare
BPHYT_RS18935 -2.4 -9.1 flagellar biosynthesis regulator FlhF compare
BPHYT_RS10945 -2.3 -1.6 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS14060 -2.3 -1.5 peptidase M23 compare
BPHYT_RS04010 -2.3 -1.2 glycosyl transferase compare
BPHYT_RS18840 -2.3 -7.0 flagellar hook-associated protein FlgL compare
BPHYT_RS22295 -2.3 -1.0 LysR family transcriptional regulator compare
BPHYT_RS06985 -2.3 -6.1 fumarate hydratase compare
BPHYT_RS24095 -2.3 -3.1 membrane protein compare
BPHYT_RS18780 -2.3 -4.9 flagellar motor switch protein FliG compare
BPHYT_RS18845 -2.3 -9.8 flagellar hook-associated protein FlgK compare
BPHYT_RS18775 -2.3 -10.6 flagellar M-ring protein FliF compare
BPHYT_RS14865 -2.2 -1.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS09160 -2.2 -3.5 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS02525 -2.2 -5.6 membrane protein compare
BPHYT_RS29345 -2.2 -1.6 lipoyl synthase compare
BPHYT_RS31050 -2.2 -1.0 epimerase compare
BPHYT_RS18940 -2.2 -7.2 flagellar biosynthesis protein FlhA compare
BPHYT_RS17955 -2.2 -3.8 cytochrome C compare
BPHYT_RS14195 -2.2 -1.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS07540 -2.1 -0.9 hypothetical protein compare
BPHYT_RS36600 -2.1 -1.9 lytic transglycosylase compare
BPHYT_RS11235 -2.1 -0.9 hypothetical protein compare
BPHYT_RS02975 -2.1 -1.7 membrane protein compare
BPHYT_RS18340 -2.1 -1.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS06175 -2.1 -3.2 LPS biosynthesis compare
BPHYT_RS23910 -2.1 -1.7 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS17035 -2.1 -2.0 sugar kinase compare
BPHYT_RS18860 -2.0 -3.9 flagellar P-ring protein FlgI compare
BPHYT_RS18910 -2.0 -1.3 FlgN compare
BPHYT_RS29540 -2.0 -0.9 aldolase compare
BPHYT_RS18795 -2.0 -6.2 flagellar export protein FliJ compare
BPHYT_RS09650 -2.0 -1.7 hypothetical protein compare
BPHYT_RS18870 -2.0 -3.4 flagellar basal body rod protein FlgG compare
BPHYT_RS16905 -2.0 -2.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33645 -2.0 -5.3 homoserine kinase compare
BPHYT_RS09480 -2.0 -0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12725 -2.0 -9.2 regulator compare
BPHYT_RS18890 -2.0 -2.1 flagellar basal body rod protein FlgC compare
BPHYT_RS16090 -2.0 -1.3 hypothetical protein compare
BPHYT_RS33890 -2.0 -8.5 fimbrial protein FimV compare
BPHYT_RS18925 -2.0 -6.1 RNA polymerase sigma70 compare
BPHYT_RS33580 -2.0 -3.9 geranyltranstransferase compare
BPHYT_RS27410 -2.0 -1.8 amidohydrolase compare
BPHYT_RS16340 -2.0 -3.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS01730 -2.0 -2.1 serine/threonine protein kinase compare
BPHYT_RS03110 -1.9 -1.4 MarR family transcriptional regulator compare
BPHYT_RS19260 -1.9 -0.8 hypothetical protein compare
BPHYT_RS16245 -1.9 -3.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS20245 -1.9 -4.0 iron ABC transporter substrate-binding protein compare
BPHYT_RS12990 -1.9 -1.5 iron transporter compare
BPHYT_RS36275 -1.9 -1.3 hypothetical protein compare
BPHYT_RS02610 -1.8 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33535 -1.8 -13.0 RNA polymerase sigma factor RpoD compare
BPHYT_RS18885 -1.8 -4.7 flagellar basal body rod modification protein FlgD compare
BPHYT_RS20880 -1.8 -0.8 polyketide cyclase compare
BPHYT_RS08125 -1.8 -5.6 ATPase compare
BPHYT_RS18965 -1.8 -1.2 chemotaxis protein CheY compare
BPHYT_RS27160 -1.8 -1.0 hypothetical protein compare
BPHYT_RS09825 -1.8 -1.4 Fe-S protein compare
BPHYT_RS12615 -1.8 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS26490 -1.8 -0.8 hypothetical protein compare
BPHYT_RS17445 -1.8 -3.0 GTP-binding protein YchF compare
BPHYT_RS24580 -1.8 -1.2 hypothetical protein compare
BPHYT_RS06685 -1.8 -1.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS07480 -1.7 -1.1 FAD-dependent oxidoreductase compare
BPHYT_RS19015 -1.7 -9.5 flagellar motor protein MotA compare
BPHYT_RS08995 -1.7 -0.9 hypothetical protein compare
BPHYT_RS06075 -1.7 -5.2 hypothetical protein compare
BPHYT_RS13645 -1.7 -10.2 threonine--tRNA ligase compare
BPHYT_RS14185 -1.7 -1.4 transcription elongation factor GreA compare
BPHYT_RS04965 -1.7 -5.1 ATP-binding protein compare
BPHYT_RS14400 -1.7 -2.3 anti-sigma factor compare
BPHYT_RS29705 -1.7 -2.4 (2Fe-2S)-binding protein compare
BPHYT_RS10710 -1.7 -1.5 sensor histidine kinase compare
BPHYT_RS22835 -1.7 -0.9 flagellar motor protein MotA compare
BPHYT_RS26880 -1.7 -1.4 ketosteroid isomerase compare
BPHYT_RS06790 -1.7 -4.8 hypothetical protein compare
BPHYT_RS02180 -1.7 -1.6 hypothetical protein compare
BPHYT_RS17380 -1.7 -6.6 ribulose-phosphate 3-epimerase compare
BPHYT_RS13160 -1.7 -1.1 membrane protein compare
BPHYT_RS16135 -1.7 -6.0 ABC transporter ATP-binding protein compare
BPHYT_RS36480 -1.7 -1.9 hypothetical protein compare
BPHYT_RS16215 -1.6 -3.2 sensor histidine kinase compare
BPHYT_RS08565 -1.6 -0.5 dihydroorotate dehydrogenase compare
BPHYT_RS17530 -1.6 -2.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18805 -1.6 -4.0 flagellar basal body protein FliL compare
BPHYT_RS18970 -1.6 -7.5 chemotaxis protein compare
BPHYT_RS10095 -1.6 -1.6 integrase compare
BPHYT_RS33465 -1.6 -2.9 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS18765 -1.6 -2.9 flagellar biosynthesis protein FliS compare
BPHYT_RS27330 -1.6 -0.9 hypothetical protein compare
BPHYT_RS18830 -1.6 -2.7 flagellar biosynthesis protein FliQ compare
BPHYT_RS27890 -1.6 -0.8 hypothetical protein compare
BPHYT_RS20750 -1.6 -1.3 LacI family transcriptional regulator compare
BPHYT_RS12550 -1.6 -0.7 GTP-binding protein HflX compare
BPHYT_RS14550 -1.6 -0.7 tRNA-Asn compare
BPHYT_RS29850 -1.6 -1.2 protein tyrosine kinase compare
BPHYT_RS12145 -1.5 -7.6 methionine aminopeptidase compare
BPHYT_RS33155 -1.5 -1.4 hypothetical protein compare
BPHYT_RS27560 -1.5 -1.1 histidine kinase compare
BPHYT_RS25500 -1.5 -1.1 hypothetical protein compare
BPHYT_RS23455 -1.5 -0.6 phosphorylase compare
BPHYT_RS10650 -1.5 -1.0 membrane protein compare
BPHYT_RS33885 -1.5 -8.1 tRNA pseudouridine synthase A compare
BPHYT_RS25055 -1.5 -3.1 MFS transporter compare
BPHYT_RS01795 -1.5 -4.5 histidine kinase compare
BPHYT_RS18705 -1.5 -1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS22500 -1.5 -2.3 transcriptional regulator compare
BPHYT_RS34920 -1.5 -1.3 IclR family transcriptional regulator compare
BPHYT_RS19115 -1.5 -1.8 acyl carrier protein compare
BPHYT_RS22915 -1.5 -2.0 pilus assembly protein CpaE compare
BPHYT_RS18260 -1.5 -5.2 phenylacetic acid degradation protein compare
BPHYT_RS11155 -1.4 -0.8 hypothetical protein compare
BPHYT_RS12150 -1.4 -7.5 PII uridylyl-transferase compare
BPHYT_RS18835 -1.4 -1.1 flagellar biosynthesis protein FliR compare
BPHYT_RS06550 -1.4 -1.2 acetolactate synthase compare
BPHYT_RS08190 -1.4 -1.2 type II secretion system protein compare
BPHYT_RS11270 -1.4 -4.2 hypothetical protein compare
BPHYT_RS35735 -1.4 -1.0 nitroreductase compare
BPHYT_RS05455 -1.4 -1.7 AraC family transcriptional regulator compare
BPHYT_RS01790 -1.4 -6.6 LuxR family transcriptional regulator compare
BPHYT_RS02765 -1.4 -1.0 cytochrome BD oxidase subunit I compare
BPHYT_RS18250 -1.4 -5.4 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS09000 -1.4 -0.8 competence protein ComE compare
BPHYT_RS29020 -1.4 -1.6 hypothetical protein compare
BPHYT_RS01435 -1.3 -11.6 LysR family transcriptional regulator compare
BPHYT_RS08245 -1.3 -3.4 anti-sigma factor compare
BPHYT_RS03410 -1.3 -1.5 queuine tRNA-ribosyltransferase compare


Specific Phenotypes

For 8 genes in this experiment