Experiment set19IT010 for Burkholderia phytofirmans PsJN

Compare to:

R2A control

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS02570 +1.7 11.4 phosphocarrier protein HPr compare
BPHYT_RS13605 +1.6 1.7 tRNA-Pro compare
BPHYT_RS02480 +1.6 1.8 alkaline phosphatase compare
BPHYT_RS29035 +1.5 3.3 arsenic transporter compare
BPHYT_RS14880 +1.3 2.7 integration host factor subunit beta compare
BPHYT_RS33385 +1.3 2.9 major facilitator superfamily protein compare
BPHYT_RS29720 +1.3 1.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS19890 +1.3 2.0 hypothetical protein compare
BPHYT_RS03730 +1.3 2.7 transcriptional repressor NrdR compare
BPHYT_RS22470 +1.1 1.9 hydrolase compare
BPHYT_RS05850 +1.1 1.6 hypothetical protein compare
BPHYT_RS02575 +1.1 6.0 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS17030 +1.1 1.6 lipid hydroperoxide peroxidase compare
BPHYT_RS32335 +1.1 3.0 AsnC family transcriptional regulator compare
BPHYT_RS35730 +1.1 2.0 hypothetical protein compare
BPHYT_RS22455 +1.1 1.3 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS32880 +1.1 1.4 alanine acetyltransferase compare
BPHYT_RS15015 +1.0 1.7 ArsR family transcriptional regulator compare
BPHYT_RS18305 +1.0 7.4 MFS transporter compare
BPHYT_RS10040 +1.0 1.3 hypothetical protein compare
BPHYT_RS23525 +1.0 1.7 hypothetical protein compare
BPHYT_RS00115 +1.0 1.7 acetaldehyde dehydrogenase compare
BPHYT_RS21025 +0.9 1.0 cation-binding protein compare
BPHYT_RS05730 +0.9 3.5 hypothetical protein compare
BPHYT_RS31290 +0.9 2.8 histidine kinase compare
BPHYT_RS28830 +0.9 1.1 LysR family transcriptional regulator compare
BPHYT_RS14475 +0.9 3.6 HAD family hydrolase compare
BPHYT_RS25395 +0.9 1.1 3-oxoacyl-ACP reductase compare
BPHYT_RS34410 +0.9 1.3 hypothetical protein compare
BPHYT_RS30465 +0.9 1.2 short-chain dehydrogenase compare
BPHYT_RS25065 +0.9 1.5 glycine/betaine ABC transporter ATPase compare
BPHYT_RS25470 +0.9 1.4 alkylhydroperoxidase compare
BPHYT_RS30230 +0.8 1.7 LysR family transcriptional regulator compare
BPHYT_RS03455 +0.8 2.2 paraquat-inducible protein A compare
BPHYT_RS26490 +0.8 1.2 hypothetical protein compare
BPHYT_RS22145 +0.8 1.8 phosphoesterase compare
BPHYT_RS24975 +0.8 2.8 RNA polymerase sigma24 factor compare
BPHYT_RS18970 +0.8 5.2 chemotaxis protein compare
BPHYT_RS05900 +0.8 1.7 hypothetical protein compare
BPHYT_RS29250 +0.8 2.2 dihydrodipicolinate synthase compare
BPHYT_RS34240 +0.8 1.5 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS15890 +0.8 1.1 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS10320 +0.8 2.6 hypothetical protein compare
BPHYT_RS36220 +0.8 1.1 hypothetical protein compare
BPHYT_RS26880 +0.8 2.3 ketosteroid isomerase compare
BPHYT_RS10350 +0.8 1.8 hypothetical protein compare
BPHYT_RS07475 +0.8 1.6 nitrate reductase compare
BPHYT_RS09565 +0.8 1.4 acetyl-CoA acetyltransferase compare
BPHYT_RS01265 +0.8 1.6 lysine transporter LysE compare
BPHYT_RS02295 +0.8 2.4 hypothetical protein compare
BPHYT_RS34430 +0.8 1.3 2-keto-4-pentenoate hydratase compare
BPHYT_RS07425 +0.8 2.7 hypothetical protein compare
BPHYT_RS02685 +0.8 4.2 cytochrome C oxidase subunit I compare
BPHYT_RS31305 +0.8 1.8 alcohol dehydrogenase compare
BPHYT_RS11555 +0.8 1.5 allantoinase compare
BPHYT_RS22930 +0.7 1.5 type II secretion system protein compare
BPHYT_RS02935 +0.7 4.2 potassium transporter compare
BPHYT_RS32750 +0.7 1.1 lipoprotein compare
BPHYT_RS27720 +0.7 1.2 hypothetical protein compare
BPHYT_RS20840 +0.7 1.5 beta-lactamase compare
BPHYT_RS09525 +0.7 1.4 toxin HipA compare
BPHYT_RS05195 +0.7 1.5 hypothetical protein compare
BPHYT_RS28280 +0.7 1.7 hypothetical protein compare
BPHYT_RS18660 +0.7 1.6 hypothetical protein compare
BPHYT_RS09150 +0.7 4.5 acetyl-CoA acetyltransferase compare
BPHYT_RS33355 +0.7 1.9 oxalyl-CoA decarboxylase compare
BPHYT_RS22420 +0.7 1.0 membrane protein compare
BPHYT_RS27485 +0.7 1.4 NAD-dependent dehydratase compare
BPHYT_RS13555 +0.7 1.8 acyl-CoA dehydrogenase compare
BPHYT_RS09905 +0.7 1.4 hypothetical protein compare
BPHYT_RS06095 +0.7 4.0 esterase compare
BPHYT_RS21700 +0.7 1.3 phosphotransacetylase compare
BPHYT_RS29920 +0.7 0.7 hypothetical protein compare
BPHYT_RS36585 +0.7 2.1 hypothetical protein compare
BPHYT_RS33010 +0.7 1.9 hypothetical protein compare
BPHYT_RS28680 +0.7 1.6 porin compare
BPHYT_RS10005 +0.7 1.6 hypothetical protein compare
BPHYT_RS36460 +0.7 2.0 hypothetical protein compare
BPHYT_RS24075 +0.7 3.7 ATPase compare
BPHYT_RS00955 +0.7 1.4 DNA polymerase compare
BPHYT_RS34605 +0.7 2.4 transcriptional regulator compare
BPHYT_RS05085 +0.7 1.7 LysR family transcriptional regulator compare
BPHYT_RS29235 +0.7 2.0 cell shape determination protein CcmA compare
BPHYT_RS12825 +0.7 2.0 phasin family protein compare
BPHYT_RS15775 +0.7 2.1 peptide ABC transporter permease compare
BPHYT_RS27655 +0.7 1.1 potassium transporter compare
BPHYT_RS18525 +0.7 2.0 hypothetical protein compare
BPHYT_RS28115 +0.7 1.7 hypothetical protein compare
BPHYT_RS02965 +0.7 1.4 membrane protein compare
BPHYT_RS22530 +0.7 1.2 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS20695 +0.7 1.0 ribokinase compare
BPHYT_RS30055 +0.6 1.2 hypothetical protein compare
BPHYT_RS26470 +0.6 0.9 MFS transporter compare
BPHYT_RS24005 +0.6 1.9 L-histidine ABC transporter, permease component 1 (from data) compare
BPHYT_RS20790 +0.6 1.3 TetR family transcriptional regulator compare
BPHYT_RS25645 +0.6 1.8 dehydrogenase compare
BPHYT_RS06930 +0.6 3.1 hypothetical protein compare
BPHYT_RS28130 +0.6 1.4 GntR family transcriptional regulator compare
BPHYT_RS35735 +0.6 0.8 nitroreductase compare
BPHYT_RS21330 +0.6 0.9 hypothetical protein compare
BPHYT_RS29810 +0.6 1.0 hexapeptide transferase compare
BPHYT_RS31320 +0.6 1.3 hypothetical protein compare
BPHYT_RS01170 +0.6 2.0 hypothetical protein compare
BPHYT_RS06710 +0.6 0.9 hypothetical protein compare
BPHYT_RS22760 +0.6 2.2 sugar ABC transporter ATP-binding protein compare
BPHYT_RS34260 +0.6 0.9 hypothetical protein compare
BPHYT_RS30760 +0.6 1.7 MmgE/PrpD family protein compare
BPHYT_RS31110 +0.6 2.0 hypothetical protein compare
BPHYT_RS00400 +0.6 2.9 hypothetical protein compare
BPHYT_RS20605 +0.6 1.8 LysR family transcriptional regulator compare
BPHYT_RS20280 +0.6 1.2 hypothetical protein compare
BPHYT_RS33585 +0.6 1.4 exodeoxyribonuclease VII small subunit compare
BPHYT_RS25770 +0.6 1.1 hypothetical protein compare
BPHYT_RS00205 +0.6 1.6 DeoR family transcriptional regulator compare
BPHYT_RS21845 +0.6 2.1 hypothetical protein compare
BPHYT_RS30905 +0.6 1.3 histidine kinase compare
BPHYT_RS35205 +0.6 1.6 hypothetical protein compare
BPHYT_RS31625 +0.6 1.9 membrane protein compare
BPHYT_RS33450 +0.6 1.5 LysR family transcriptional regulator compare
BPHYT_RS27180 +0.6 2.5 GntR family transcriptional regulator compare
BPHYT_RS19660 +0.6 1.2 hypothetical protein compare
BPHYT_RS00980 +0.6 0.7 GCN5 family acetyltransferase compare
BPHYT_RS05645 +0.6 1.9 hypothetical protein compare
BPHYT_RS23940 +0.6 1.2 GntR family transcriptional regulator compare
BPHYT_RS25980 +0.6 0.7 urea carboxylase compare
BPHYT_RS34360 +0.6 1.8 methyl-accepting chemotaxis protein compare
BPHYT_RS25810 +0.6 2.2 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
BPHYT_RS23225 +0.6 1.1 hypothetical protein compare
BPHYT_RS10715 +0.6 1.1 acyl-CoA dehydrogenase compare
BPHYT_RS14775 +0.6 2.0 membrane protein compare
BPHYT_RS23350 +0.6 1.0 NAD-dependent epimerase/dehydratase compare
BPHYT_RS31910 +0.6 0.8 hypothetical protein compare
BPHYT_RS13450 +0.6 1.1 GntR family transcriptional regulator compare
BPHYT_RS07585 +0.6 1.8 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
BPHYT_RS10850 +0.6 0.8 LysR family transcriptional regulator compare
BPHYT_RS09620 +0.6 1.7 aminodeoxychorismate lyase compare
BPHYT_RS29345 +0.6 1.5 lipoyl synthase compare
BPHYT_RS00215 +0.6 1.9 aminoglycoside phosphotransferase compare
BPHYT_RS35245 +0.6 1.1 hypothetical protein compare
BPHYT_RS29950 +0.6 1.2 hypothetical protein compare
BPHYT_RS22250 +0.6 1.0 D-amino acid dehydrogenase compare
BPHYT_RS04500 +0.6 1.2 urease accessory protein UreF compare
BPHYT_RS35165 +0.6 1.4 peptidase compare
BPHYT_RS06195 +0.6 1.5 membrane protein compare
BPHYT_RS14550 +0.6 0.7 tRNA-Asn compare
BPHYT_RS36230 +0.6 1.0 hypothetical protein compare
BPHYT_RS17075 +0.6 2.0 ABC transporter permease compare
BPHYT_RS36305 +0.6 3.1 hypothetical protein compare
BPHYT_RS09385 +0.6 0.7 FAD-dependent oxidoreductase compare
BPHYT_RS06975 +0.6 1.0 glutamate racemase compare
BPHYT_RS14150 +0.6 1.7 transposase compare
BPHYT_RS20425 +0.6 1.0 hypothetical protein compare
BPHYT_RS02010 +0.5 1.1 copper homeostasis protein CutC compare
BPHYT_RS15455 +0.5 1.8 hypothetical protein compare
BPHYT_RS26540 +0.5 0.9 hypothetical protein compare
BPHYT_RS35750 +0.5 0.5 hypothetical protein compare
BPHYT_RS07935 +0.5 1.1 Rrf2 family transcriptional regulator compare
BPHYT_RS03235 +0.5 1.1 enoyl-CoA hydratase compare
BPHYT_RS29365 +0.5 0.9 ATP-NAD kinase compare
BPHYT_RS04015 +0.5 0.9 glycosyl transferase compare
BPHYT_RS01105 +0.5 1.2 hypothetical protein compare
BPHYT_RS31190 +0.5 2.0 ABC transporter permease compare
BPHYT_RS05500 +0.5 3.5 histidine/lysine/arginine/ornithine ABC transporter permease HisM compare
BPHYT_RS29500 +0.5 0.9 hypothetical protein compare
BPHYT_RS34665 +0.5 1.0 hypothetical protein compare
BPHYT_RS24095 +0.5 1.5 membrane protein compare
BPHYT_RS28985 +0.5 1.0 hypothetical protein compare
BPHYT_RS26265 +0.5 1.2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS22375 +0.5 3.5 4-hydroxybenzoyl-CoA thioesterase compare
BPHYT_RS10995 +0.5 1.2 GntR family transcriptional regulator compare
BPHYT_RS05795 +0.5 1.5 hypothetical protein compare
BPHYT_RS33615 +0.5 0.8 decarboxylase compare
BPHYT_RS17085 +0.5 2.9 hypoxanthine phosphoribosyltransferase compare
BPHYT_RS35835 +0.5 2.1 hypothetical protein compare
BPHYT_RS27395 +0.5 1.0 N-acetyltransferase GCN5 compare
BPHYT_RS28955 +0.5 1.3 hypothetical protein compare
BPHYT_RS22380 +0.5 2.6 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) compare
BPHYT_RS23720 +0.5 2.3 nH(3)-dependent NAD(+) synthetase compare
BPHYT_RS10965 +0.5 1.3 hypothetical protein compare
BPHYT_RS23975 +0.5 1.4 peroxidase compare
BPHYT_RS36590 +0.5 1.3 hypothetical protein compare
BPHYT_RS11515 +0.5 2.0 LysR family transcriptional regulator compare
BPHYT_RS17140 +0.5 3.1 magnesium and cobalt efflux protein CorC compare
BPHYT_RS22295 +0.5 0.8 LysR family transcriptional regulator compare
BPHYT_RS36435 +0.5 1.6 hypothetical protein compare
BPHYT_RS06135 +0.5 1.6 hypothetical protein compare
BPHYT_RS22835 +0.5 0.8 flagellar motor protein MotA compare
BPHYT_RS13810 +0.5 1.1 type VI secretion protein compare
BPHYT_RS09280 +0.5 0.8 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS29630 +0.5 1.3 SAM-dependent methyltransferase compare
BPHYT_RS32735 +0.5 1.1 hypothetical protein compare
BPHYT_RS25780 +0.5 0.6 DeoR faimly transcriptional regulator compare
BPHYT_RS11685 +0.5 0.7 phasin family protein compare
BPHYT_RS18330 +0.5 2.1 phosphatidylethanolamine-binding protein compare
BPHYT_RS05115 +0.5 2.5 NADH-ubiquinone oxidoreductase subunit 6 compare
BPHYT_RS27155 +0.5 1.0 peroxiredoxin compare
BPHYT_RS17050 +0.5 1.5 hypothetical protein compare
BPHYT_RS29715 +0.5 2.3 acylaldehyde oxidase compare
BPHYT_RS22680 +0.5 2.2 3-dehydroquinate dehydratase compare
BPHYT_RS16815 +0.5 0.9 ureidoglycolate hydrolase compare


Specific Phenotypes

For 2 genes in this experiment