Experiment set19IT009 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Post-colonization (Day 2) - Cage6;Mouse1

200 most important genes:

  gene name fitness t score description  
BT3933 -5.5 -3.8 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT1843 -4.9 -3.4 adenylosuccinate synthetase (NCBI ptt file) compare
BT0892 -4.8 -3.2 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT1374 -4.4 -3.1 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT0155 -4.3 -4.2 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) compare
BT3320 -4.2 -7.6 dihydrodipicolinate reductase (NCBI ptt file) compare
BT1607 -4.2 -6.3 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT4610 -4.1 -2.8 RecA (NCBI ptt file) compare
BT0156 -4.0 -2.8 transcriptional regulator (NCBI ptt file) compare
BT3253 -4.0 -2.8 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT1375 -3.8 -8.5 aspartokinase (NCBI ptt file) compare
BT4211 -3.8 -2.6 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT1733 -3.6 -5.0 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT2843 -3.5 -2.4 integrase (NCBI ptt file) compare
BT3733 -3.4 -15.0 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT0557 -3.4 -8.4 carbamyl phosphate synthetase (NCBI ptt file) compare
BT0891 -3.2 -3.0 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT3936 -3.1 -2.2 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT0556 -3.1 -3.7 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) compare
BT4572 -3.0 -8.5 enolase (NCBI ptt file) compare
BT0700 -3.0 -6.7 GTP pyrophosphokinase (NCBI ptt file) compare
BT2417 -3.0 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT3717 -3.0 -7.0 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT_2008 -2.9 -2.8 hypothetical protein (RefSeq) compare
BT1747 -2.9 -5.9 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT3688 -2.9 -10.3 putative acetyltransferase (NCBI ptt file) compare
BT2396 -2.8 -10.8 putative membrane transporter involved in nicotinamide mononucleotide transport (NCBI ptt file) compare
BT1698 -2.8 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT1758 -2.7 -5.5 fructose transporter (from data) compare
BT2403 -2.7 -13.7 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT3821 -2.7 -11.9 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) compare
BT1859 -2.7 -5.8 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3981 -2.6 -3.9 hypothetical protein (NCBI ptt file) compare
BT4649 -2.6 -2.6 hypothetical protein (NCBI ptt file) compare
BT3268 -2.6 -1.8 glucose-inhibited division protein A (NCBI ptt file) compare
BT1081 -2.5 -2.8 recombination protein recR (NCBI ptt file) compare
BT0771 -2.5 -4.9 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT0619 -2.4 -2.3 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) compare
BT1857 -2.4 -8.8 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT1222 -2.4 -2.7 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT3758 -2.3 -5.1 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT4300 -2.3 -4.6 transcription regulator, CRP family (NCBI ptt file) compare
BT0555 -2.3 -8.8 amidophosphoribosyltransferase (NCBI ptt file) compare
BT0548 -2.3 -3.9 diaminopimelate epimerase (NCBI ptt file) compare
BT2153 -2.2 -2.9 putative Fe-S oxidoreductases (NCBI ptt file) compare
p5482_02 -2.2 -7.6 hypothetical protein (NCBI) compare
BT0249 -2.2 -2.9 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file) compare
BT0655 -2.2 -4.7 superoxide dismutase [Fe] (NCBI ptt file) compare
BT1564 -2.2 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT0180 -2.2 -9.9 5-methyltetrahydrofolate-homocysteine methyltransferase (NCBI ptt file) compare
BT0547 -2.2 -6.4 aspartate aminotransferase (NCBI ptt file) compare
BT4551 -2.1 -2.5 putative GTPase, ThdF family (NCBI ptt file) compare
BT4098 -2.1 -1.4 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT1912 -2.0 -2.3 hypothetical protein (NCBI ptt file) compare
BT3395 -2.0 -5.9 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT0258 -2.0 -9.5 glucosamine-6-phosphate isomerase (NCBI ptt file) compare
BT3712 -2.0 -5.7 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT1844 -2.0 -3.7 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT1355 -1.9 -6.3 hypothetical protein (NCBI ptt file) compare
BT1757 -1.9 -3.8 fructokinase (NCBI ptt file) compare
BT1739 -1.9 -11.5 excinuclease ABC subunit A (NCBI ptt file) compare
BT3077 -1.9 -2.5 ribonuclease R (NCBI ptt file) compare
BT1476 -1.8 -5.5 aspartate aminotransferase (NCBI ptt file) compare
BT4658 -1.8 -5.2 glucuronyl hydrolase (NCBI ptt file) compare
BT3549 -1.8 -8.0 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT2438 -1.8 -7.3 hypothetical protein (NCBI ptt file) compare
BT1854 -1.8 -1.6 putative membrane-associated phospholipid phosphatase (NCBI ptt file) compare
BT2161 -1.7 -3.6 50S ribosomal protein L9 (NCBI ptt file) compare
BT3760 -1.7 -6.5 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT0519 -1.7 -4.4 hypothetical protein (NCBI ptt file) compare
BT0490 -1.7 -2.0 hypothetical protein (NCBI ptt file) compare
BT1439 -1.6 -8.6 Outer membrane binding protein for vancomycin (SusD-like) (from data) compare
BT0570 -1.6 -5.1 excinuclease ABC subunit B (NCBI ptt file) compare
BT0618 -1.6 -1.9 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC (NCBI ptt file) compare
BT4386 -1.6 -2.1 hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file) compare
BT1343 -1.6 -4.7 putative capsule biosynthesis protein (NCBI ptt file) compare
BT1933 -1.6 -2.6 transposase (NCBI ptt file) compare
BT2062 -1.6 -6.7 6-phosphofructokinase (NCBI ptt file) compare
BT2413 -1.6 -8.0 homoserine O-succinyltransferase (NCBI ptt file) compare
BT2397 -1.6 -6.7 conserved hypothetical protein (NCBI ptt file) compare
BT0621 -1.6 -2.5 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file) compare
BT2145 -1.6 -8.5 ribonucleoside-diphosphate reductase alpha chain (NCBI ptt file) compare
BT1759 -1.6 -4.3 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) compare
BT2437 -1.6 -7.2 hypothetical protein (NCBI ptt file) compare
BT1220 -1.6 -2.5 6-phosphogluconolactonase (NCBI ptt file) compare
BT3762 -1.6 -5.2 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT3935 -1.6 -4.3 aminotransferase (NCBI ptt file) compare
BT3195 -1.6 -4.1 conserved hypothetical protein (NCBI ptt file) compare
BT1353 -1.6 -2.1 glycosyltransferase (NCBI ptt file) compare
BT0578 -1.5 -5.8 excinuclease ABC subunit A (NCBI ptt file) compare
BT1153 -1.5 -4.7 phosphoserine aminotransferase (NCBI ptt file) compare
BT3260 -1.5 -2.3 DNA polymerase I (NCBI ptt file) compare
BT1351 -1.5 -3.0 glucose-1-phosphate cytidylyltransferase (NCBI ptt file) compare
BT0173 -1.5 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT3072 -1.5 -5.9 collagenase precursor (NCBI ptt file) compare
BT0917 -1.5 -3.9 competence-damage inducible protein (NCBI ptt file) compare
BT3694 -1.5 -1.7 glycosyltransferase (NCBI ptt file) compare
BT1860 -1.4 -4.6 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT3845 -1.4 -3.2 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
BT2841 -1.4 -1.6 pyruvate kinase (NCBI ptt file) compare
BT1347 -1.4 -4.0 conserved hypothetical protein (NCBI ptt file) compare
BT0740 -1.4 -1.8 flavoredoxin (NCBI ptt file) compare
BT3730 -1.4 -1.8 putative regulatory protein (NCBI ptt file) compare
BT1189 -1.4 -2.6 conserved hypothetical protein (NCBI ptt file) compare
BT1304 -1.4 -1.6 putative transcriptional regulator (NCBI ptt file) compare
BT3761 -1.4 -4.7 N-succinylglutamate synthase (from data) compare
BT4346 -1.4 -3.2 conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file) compare
BT0013 -1.4 -2.4 hypothetical protein (NCBI ptt file) compare
BT1082 -1.4 -6.8 Na+/solute symporter (NCBI ptt file) compare
BT0370 -1.4 -5.2 galactokinase (NCBI ptt file) compare
BT3759 -1.3 -6.1 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT1348 -1.3 -3.3 CDP-abequose synthase (NCBI ptt file) compare
BT0527 -1.3 -4.2 tryptophan synthase alpha chain (NCBI ptt file) compare
BT1342 -1.3 -5.0 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT2798 -1.3 -9.5 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT1350 -1.3 -4.7 CDP-glucose 4,6-dehydratase (NCBI ptt file) compare
BT2387 -1.3 -6.1 O-acetylhomoserine (thiol)-lyase (NCBI ptt file) compare
BT1221 -1.3 -3.0 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT2148 -1.3 -3.1 glycosyltransferase (NCBI ptt file) compare
BT4330 -1.3 -6.3 xanthosine permease (NCBI ptt file) compare
BT1346 -1.3 -4.1 capsule biosynthesis protein capA (NCBI ptt file) compare
BT4191 -1.3 -6.7 hypothetical protein (NCBI ptt file) compare
BT4587 -1.3 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT2386 -1.3 -4.2 AsnC family transcriptional regulator (NCBI ptt file) compare
BT3729 -1.3 -3.5 putative protoporphyrinogen oxidase (NCBI ptt file) compare
BT2742 -1.3 -1.0 integrase, site-specific recombinase (NCBI ptt file) compare
BT1440 -1.3 -6.0 TonB-dependent receptor for vancomycin (SusC-like) (from data) compare
BT3819 -1.3 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT4041 -1.3 -3.8 conserved hypothetical protein (NCBI ptt file) compare
BT1352 -1.3 -3.5 putative glycosyltransferase HI1698 (NCBI ptt file) compare
BT1098 -1.3 -3.4 methylglyoxal synthase (NCBI ptt file) compare
BT3801 -1.2 -3.0 rteB, two-component system response regulator (NCBI ptt file) compare
BT2977 -1.2 -6.7 peptidylprolyl isomerase (NCBI ptt file) compare
BT3368 -1.2 -1.8 putative glycosyltransferase (NCBI ptt file) compare
BT0828 -1.2 -2.2 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT3550 -1.2 -3.9 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) compare
BT4265 -1.2 -2.5 GMP synthase (glutamine-hydrolyzing) (NCBI ptt file) compare
BT1363 -1.2 -0.8 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT1612 -1.2 -3.1 hypothetical protein (NCBI ptt file) compare
BT4349 -1.2 -2.9 hypothetical protein (NCBI ptt file) compare
BT0900 -1.2 -2.6 putative tetratricopeptide repeat family protein (NCBI ptt file) compare
BT3979 -1.2 -2.2 putative methyltransferase (NCBI ptt file) compare
BT2236 -1.2 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT4097 -1.2 -1.1 Trk system K+ uptake protein trkH (NCBI ptt file) compare
BT4305 -1.2 -7.2 putative alpha-amylase (NCBI ptt file) compare
BT0216 -1.2 -2.6 putative rubrerythrin (NCBI ptt file) compare
BT4644 -1.2 -2.3 putative anti-sigma factor (NCBI ptt file) compare
BT0876 -1.2 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT3980 -1.2 -1.3 hypothetical protein (NCBI ptt file) compare
BT1917 -1.2 -3.8 propionyl-CoA carboxylase beta chain (NCBI ptt file) compare
BT2749 -1.1 -7.3 putative membrane-associated HD superfamily hydrolase (NCBI ptt file) compare
BT4304 -1.1 -7.5 putative glycosyltransferase (NCBI ptt file) compare
BT3431 -1.1 -4.3 DNA repair protein (NCBI ptt file) compare
BT0157 -1.1 -2.2 hypothetical protein (NCBI ptt file) compare
BT1752 -1.1 -1.9 hypothetical protein (NCBI ptt file) compare
BT2938 -1.1 -2.6 putative glycosyltransferase (NCBI ptt file) compare
BT1211 -1.1 -2.2 hypothetical protein (NCBI ptt file) compare
BT0088 -1.1 -2.2 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1339 -1.1 -3.7 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (NCBI ptt file) compare
BT0184 -1.1 -2.5 uridine kinase (uridine monophosphokinase) (NCBI ptt file) compare
BT0954 -1.1 -3.1 conserved hypothetical protein (NCBI ptt file) compare
BT3363 -1.1 -1.4 lipopolysaccharide core biosynthesis protein LpsA (NCBI ptt file) compare
BT2090 -1.1 -5.6 methylmalonyl-CoA mutase large subunit (NCBI ptt file) compare
BT0747 -1.1 -1.5 putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file) compare
BT1589 -1.1 -2.1 hypothetical protein (NCBI ptt file) compare
BT1358 -1.1 -2.6 putative transcriptional regulator (NCBI ptt file) compare
BT2059 -1.1 -1.4 TonB (NCBI ptt file) compare
BT2074 -1.0 -4.8 ketol-acid reductoisomerase (NCBI ptt file) compare
BT4723 -1.0 -2.9 putative anti-sigma factor (NCBI ptt file) compare
BT0643 -1.0 -4.8 RNA methyltransferase (NCBI ptt file) compare
BT3805 -1.0 -2.9 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0746 -1.0 -2.3 putative zinc protease (NCBI ptt file) compare
BT1270 -1.0 -4.1 putative Na+/H+ antiporter (NCBI ptt file) compare
BT0927 -1.0 -1.1 two-component system sensor histidine kinase (NCBI ptt file) compare
BT1345 -1.0 -3.4 glycosyltransferase (NCBI ptt file) compare
BT0955 -1.0 -2.8 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT0887 -1.0 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT2091 -1.0 -3.9 methylmalonyl-CoA mutase small subunit (NCBI ptt file) compare
BT2146 -1.0 -6.6 4-alpha-glucanotransferase (NCBI ptt file) compare
BT1446 -1.0 -4.2 dethiobiotin synthetase (NCBI ptt file) compare
BT1953 -1.0 -4.8 putative TonB-linked outer membrane receptor (NCBI ptt file) compare
BT4339 -1.0 -2.6 glutamine synthetase (NCBI ptt file) compare
BT3266 -1.0 -6.6 excinuclease ABC subunit C (NCBI ptt file) compare
BT0378 -1.0 -1.7 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) compare
BT4027 -1.0 -1.7 hypothetical protein (NCBI ptt file) compare
BT1356 -1.0 -2.7 putative capsule polysaccharide export protein (NCBI ptt file) compare
BT1466 -1.0 -2.2 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT4195 -1.0 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1341 -0.9 -3.4 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT1354 -0.9 -3.9 putative flippase (NCBI ptt file) compare
BT0193 -0.9 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT3503 -0.9 -1.4 glutaminase A (NCBI ptt file) compare
BT4557 -0.9 -4.4 hypothetical protein (NCBI ptt file) compare
BT3369 -0.9 -1.5 putative glycosyltransferase (NCBI ptt file) compare
BT1557 -0.9 -1.5 hypothetical protein (NCBI ptt file) compare
BT1916 -0.9 -3.0 conserved hypothetical protein (NCBI ptt file) compare
BT4255 -0.9 -2.3 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT1068 -0.9 -2.3 hypothetical protein (NCBI ptt file) compare
BT1340 -0.9 -3.7 putative lipopolysaccharide biosynthesis glycosyltransferase (NCBI ptt file) compare
BT0091 -0.9 -2.7 conserved protein found in conjugate transposon (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in mouse_post_colonization experiments