Experiment set19IT008 for Burkholderia phytofirmans PsJN

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
BPHYT_RS08960 -5.1 -2.9 threonine synthase compare
BPHYT_RS14190 -5.0 -9.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS06405 -4.5 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS17520 -4.4 -5.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS16245 -4.3 -6.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33840 -4.1 -11.0 amidophosphoribosyltransferase compare
BPHYT_RS18320 -4.0 -8.7 orotate phosphoribosyltransferase compare
BPHYT_RS03640 -4.0 -3.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS12615 -4.0 -1.9 dihydrodipicolinate synthase compare
BPHYT_RS16675 -3.8 -2.6 dihydroorotase compare
BPHYT_RS09515 -3.7 -4.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS36275 -3.6 -2.3 hypothetical protein compare
BPHYT_RS16905 -3.6 -5.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17690 -3.3 -8.6 imidazole glycerol phosphate synthase compare
BPHYT_RS33645 -2.8 -5.9 homoserine kinase compare
BPHYT_RS16255 -2.7 -5.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS33920 -2.7 -7.1 type II citrate synthase compare
BPHYT_RS03725 -2.7 -2.1 serine hydroxymethyltransferase compare
BPHYT_RS17700 -2.5 -3.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06900 -2.5 -6.3 aspartate aminotransferase compare
BPHYT_RS18705 -2.5 -2.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS07320 -2.4 -1.7 dihydrodipicolinate synthetase compare
BPHYT_RS17680 -2.3 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS08850 -2.2 -1.8 transcriptional regulator compare
BPHYT_RS23230 -2.2 -1.7 histidine kinase compare
BPHYT_RS12845 -2.2 -13.1 ATPase compare
BPHYT_RS15670 -2.1 -5.2 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS15415 -2.1 -7.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17685 -2.1 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS16270 -2.1 -2.8 phosphoglycerate kinase compare
BPHYT_RS06990 -2.0 -1.7 membrane protein compare
BPHYT_RS34815 -1.9 -2.0 ABC transporter compare
BPHYT_RS08955 -1.9 -3.8 homoserine dehydrogenase compare
BPHYT_RS36385 -1.9 -0.9 TetR family transcriptional regulator compare
BPHYT_RS25780 -1.9 -1.1 DeoR faimly transcriptional regulator compare
BPHYT_RS16710 -1.9 -1.2 LysR family transcriptional regulator compare
BPHYT_RS06610 -1.9 -1.7 triosephosphate isomerase compare
BPHYT_RS12465 -1.8 -2.8 inositol monophosphatase compare
BPHYT_RS16835 -1.8 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02975 -1.8 -2.1 membrane protein compare
BPHYT_RS16880 -1.8 -1.8 malic enzyme compare
BPHYT_RS24590 -1.7 -1.4 DeoR faimly transcriptional regulator compare
BPHYT_RS25080 -1.7 -1.9 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS17445 -1.7 -2.9 GTP-binding protein YchF compare
BPHYT_RS08565 -1.7 -0.7 dihydroorotate dehydrogenase compare
BPHYT_RS18340 -1.7 -1.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS22860 -1.6 -1.2 chemotaxis protein CheY compare
BPHYT_RS22360 -1.6 -2.5 response regulator receiver compare
BPHYT_RS25800 -1.6 -1.7 sugar ABC transporter permease compare
BPHYT_RS05705 -1.5 -1.0 hypothetical protein compare
BPHYT_RS14755 -1.5 -1.7 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS03090 -1.5 -1.5 hypothetical protein compare
BPHYT_RS08405 -1.5 -1.2 hypothetical protein compare
BPHYT_RS06685 -1.5 -1.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS14845 -1.4 -0.9 cysteine synthase compare
BPHYT_RS17530 -1.4 -2.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17675 -1.4 -2.2 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS23875 -1.4 -1.0 sugar ABC transporter ATP-binding protein compare
BPHYT_RS29855 -1.4 -1.1 protein-tyrosine-phosphatase compare
BPHYT_RS13645 -1.4 -8.8 threonine--tRNA ligase compare
BPHYT_RS04955 -1.4 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS26555 -1.4 -2.5 multidrug MFS transporter compare
BPHYT_RS17715 -1.4 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS06335 -1.4 -1.1 CopG family transcriptional regulator compare
BPHYT_RS27560 -1.3 -1.2 histidine kinase compare
BPHYT_RS31400 -1.3 -1.0 methyl-accepting chemotaxis protein compare
BPHYT_RS04010 -1.3 -1.4 glycosyl transferase compare
BPHYT_RS28025 -1.3 -1.7 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS14595 -1.3 -2.3 RNA-binding protein compare
BPHYT_RS03410 -1.3 -1.5 queuine tRNA-ribosyltransferase compare
BPHYT_RS36545 -1.3 -2.9 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS00885 -1.3 -2.2 chemotaxis protein CheY compare
BPHYT_RS23650 -1.3 -0.9 hypothetical protein compare
BPHYT_RS12530 -1.2 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS28505 -1.2 -2.3 5-deoxyglucuronate isomerase compare
BPHYT_RS12840 -1.2 -2.4 pyruvate dehydrogenase compare
BPHYT_RS07840 -1.2 -2.8 muconate cycloisomerase compare
BPHYT_RS27295 -1.2 -1.5 hypothetical protein compare
BPHYT_RS22940 -1.2 -1.2 pilus assembly protein TadE compare
BPHYT_RS02590 -1.2 -3.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS02865 -1.2 -1.7 hypothetical protein compare
BPHYT_RS16510 -1.2 -2.5 3,4-Dihydroxy-2-butanone 4-phosphate synthase compare
BPHYT_RS30010 -1.2 -1.4 cell division protein compare
BPHYT_RS11540 -1.2 -1.3 ureidoglycolate hydrolase compare
BPHYT_RS06325 -1.2 -3.9 ATPase compare
BPHYT_RS15620 -1.1 -2.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS13470 -1.1 -0.9 arylsulfate sulfotransferase compare
BPHYT_RS04290 -1.1 -1.2 glycosyl transferase family 2 compare
BPHYT_RS30720 -1.1 -1.6 hypothetical protein compare
BPHYT_RS34655 -1.1 -1.4 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS12550 -1.1 -0.9 GTP-binding protein HflX compare
BPHYT_RS21975 -1.1 -2.1 2-dehydropantoate 2-reductase compare
BPHYT_RS07140 -1.1 -1.6 hypothetical protein compare
BPHYT_RS26435 -1.1 -1.0 hypothetical protein compare
BPHYT_RS30350 -1.1 -2.0 LysR family transcriptional regulator compare
BPHYT_RS14195 -1.1 -1.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS09355 -1.1 -1.3 LysR family transcriptional regulator compare
BPHYT_RS19545 -1.1 -2.5 nuclear protein SET compare
BPHYT_RS07600 -1.1 -1.4 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS26575 -1.1 -2.2 hypothetical protein compare
BPHYT_RS23535 -1.1 -1.2 ABC transporter substrate-binding protein compare
BPHYT_RS00855 -1.1 -1.5 hypothetical protein compare
BPHYT_RS36600 -1.1 -0.9 lytic transglycosylase compare
BPHYT_RS26695 -1.1 -2.8 cobalamin biosynthesis protein CbiG compare
BPHYT_RS30990 -1.0 -1.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS06345 -1.0 -3.6 sensor histidine kinase compare
BPHYT_RS10040 -1.0 -0.7 hypothetical protein compare
BPHYT_RS34780 -1.0 -3.1 phytoene synthase compare
BPHYT_RS18590 -1.0 -0.6 hypothetical protein compare
BPHYT_RS33150 -1.0 -0.9 beta-lactamase compare
BPHYT_RS12280 -1.0 -1.1 RNA helicase compare
BPHYT_RS14670 -1.0 -1.0 hypothetical protein compare
BPHYT_RS15290 -1.0 -1.8 tRNA-Arg compare
BPHYT_RS12055 -1.0 -7.2 phosphoenolpyruvate synthase compare
BPHYT_RS04990 -1.0 -1.9 hypothetical protein compare
BPHYT_RS05155 -1.0 -3.5 acetyltransferase GCN5 compare
BPHYT_RS21075 -1.0 -1.3 (2Fe-2S)-binding protein compare
BPHYT_RS34470 -1.0 -2.1 ABC transporter compare
BPHYT_RS11400 -1.0 -1.0 hypothetical protein compare
BPHYT_RS20865 -1.0 -1.7 2-hydroxyacid dehydrogenase compare
BPHYT_RS26540 -0.9 -0.9 hypothetical protein compare
BPHYT_RS32155 -0.9 -3.4 type IV secretion system protein VirB11 compare
BPHYT_RS07415 -0.9 -2.1 hypothetical protein compare
BPHYT_RS16250 -0.9 -0.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS05320 -0.9 -0.7 beta-lactamase compare
BPHYT_RS09330 -0.9 -5.5 phytoene synthase compare
BPHYT_RS25000 -0.9 -2.1 MFS transporter compare
BPHYT_RS12725 -0.9 -6.1 regulator compare
BPHYT_RS17380 -0.9 -3.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS26820 -0.9 -1.3 LysR family transcriptional regulator compare
BPHYT_RS10165 -0.9 -1.0 transcriptional regulator compare
BPHYT_RS05025 -0.9 -1.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS02985 -0.9 -0.9 MaoC family dehydratase compare
BPHYT_RS12985 -0.9 -1.0 amino acid acetyltransferase compare
BPHYT_RS26975 -0.9 -1.3 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS33630 -0.9 -0.7 chromate transporter compare
BPHYT_RS01960 -0.9 -2.7 cytochrome C compare
BPHYT_RS23500 -0.9 -1.2 hypothetical protein compare
BPHYT_RS25575 -0.9 -0.9 alpha/beta hydrolase compare
BPHYT_RS06510 -0.9 -1.7 DeoR faimly transcriptional regulator compare
BPHYT_RS11795 -0.9 -0.8 membrane protein compare
BPHYT_RS03215 -0.9 -1.3 TetR family transcriptional regulator compare
BPHYT_RS33060 -0.9 -1.2 hypothetical protein compare
BPHYT_RS31890 -0.9 -1.0 transposase compare
BPHYT_RS28830 -0.9 -0.6 LysR family transcriptional regulator compare
BPHYT_RS14095 -0.9 -1.0 phosphohistidine phosphatase compare
BPHYT_RS00115 -0.9 -1.0 acetaldehyde dehydrogenase compare
BPHYT_RS21130 -0.9 -1.1 F420-dependent oxidoreductase compare
BPHYT_RS28255 -0.9 -1.0 hypothetical protein compare
BPHYT_RS14140 -0.9 -1.4 phosphate transporter permease subunit PstC compare
BPHYT_RS13935 -0.9 -1.3 mannosyltransferase compare
BPHYT_RS06350 -0.9 -1.2 chemotaxis protein CheY compare
BPHYT_RS16435 -0.9 -5.8 alcohol dehydrogenase compare
BPHYT_RS06250 -0.9 -1.8 pilus assembly protein PapD compare
BPHYT_RS21860 -0.9 -1.0 hypothetical protein compare
BPHYT_RS36495 -0.9 -1.7 peptidase compare
BPHYT_RS33885 -0.9 -5.3 tRNA pseudouridine synthase A compare
BPHYT_RS34320 -0.9 -1.2 DNA-binding protein compare
BPHYT_RS34805 -0.8 -3.5 ABC transporter compare
BPHYT_RS18655 -0.8 -1.7 3-oxoacyl-ACP synthase compare
BPHYT_RS10645 -0.8 -0.9 cyanate hydratase compare
BPHYT_RS20150 -0.8 -1.7 glycosyl transferase family 1 compare
BPHYT_RS15305 -0.8 -4.1 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS32250 -0.8 -1.8 membrane protein compare
BPHYT_RS33680 -0.8 -2.3 phosphoesterase compare
BPHYT_RS17670 -0.8 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS20520 -0.8 -0.9 transcriptional regulator compare
BPHYT_RS23385 -0.8 -1.2 group 1 glycosyl transferase compare
BPHYT_RS22910 -0.8 -0.8 hypothetical protein compare
BPHYT_RS23255 -0.8 -1.5 TetR family transcriptional regulator compare
BPHYT_RS17185 -0.8 -3.4 N-acetylglutamate synthase compare
BPHYT_RS22530 -0.8 -1.3 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS21700 -0.8 -1.3 phosphotransacetylase compare
BPHYT_RS17905 -0.8 -1.5 fimbrial assembly family protein compare
BPHYT_RS26675 -0.8 -1.1 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS01625 -0.8 -1.1 chemotaxis protein CheY compare
BPHYT_RS33245 -0.8 -1.6 hypothetical protein compare
BPHYT_RS30295 -0.8 -1.4 acyl-CoA dehydrogenase compare
BPHYT_RS16430 -0.8 -6.1 cytochrome C compare
BPHYT_RS29890 -0.8 -1.8 LysR family transcriptional regulator compare
BPHYT_RS10115 -0.8 -1.0 hypothetical protein compare
BPHYT_RS07515 -0.8 -1.1 photosystem reaction center subunit H compare
BPHYT_RS00225 -0.8 -1.1 hypothetical protein compare
BPHYT_RS27145 -0.8 -1.5 TetR family transcriptional regulator compare
BPHYT_RS08165 -0.8 -1.1 pilus assembly protein TadE compare
BPHYT_RS14620 -0.8 -2.2 acyl-CoA hydrolase compare
BPHYT_RS28470 -0.8 -0.8 hypothetical protein compare
BPHYT_RS14975 -0.8 -1.9 hypothetical protein compare
BPHYT_RS25165 -0.8 -1.4 HTH-type transcriptional regulator BetI compare
BPHYT_RS08715 -0.8 -1.7 adenylyl-sulfate kinase compare
BPHYT_RS12510 -0.8 -1.1 RNA-binding protein compare
BPHYT_RS30780 -0.8 -1.1 GMC family oxidoreductase compare
BPHYT_RS25935 -0.8 -2.1 type III secretion protein compare
BPHYT_RS31905 -0.8 -1.1 hypothetical protein compare
BPHYT_RS13565 -0.8 -1.8 bacterioferritin compare
BPHYT_RS04335 -0.8 -0.7 membrane protein compare
BPHYT_RS35310 -0.8 -1.1 GCN5 family N-acetyltransferase compare
BPHYT_RS06985 -0.8 -2.5 fumarate hydratase compare
BPHYT_RS28000 -0.8 -1.1 permease compare
BPHYT_RS00900 -0.8 -1.2 beta-lactamase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms