Experiment set18S422 for Ralstonia solanacearum GMI1000

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
RS_RS11840 -6.7 -6.5 phosphoenolpyruvate carboxylase compare
RS_RS04490 -6.4 -7.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
RS_RS08265 -6.0 -3.4 phosphoserine phosphatase SerB compare
RS_RS02250 -5.8 -8.9 FAD-linked oxidase compare
RS_RS14865 -5.6 -5.0 transposase compare
RS_RS04610 -5.5 -9.1 AsnC family transcriptional regulator conserved
RS_RS07130 -5.4 -7.4 phosphoenolpyruvate synthase compare
RS_RS24735 -5.2 -13.5 hypothetical protein compare
RS_RS12180 -5.2 -10.6 CysB family HTH-type transcriptional regulator compare
RS_RS04495 -5.1 -6.1 prephenate dehydratase compare
RS_RS00135 -5.0 -6.9 homoserine O-acetyltransferase compare
RS_RS00555 -4.8 -7.4 phosphomethylpyrimidine synthase compare
RS_RS07885 -4.4 -1.5 chorismate synthase compare
RS_RS04605 -4.4 -8.9 D-amino acid dehydrogenase small subunit compare
RS_RS14860 -4.0 -8.2 glutamate synthase subunit alpha compare
RS_RS14885 -3.7 -1.9 shikimate kinase compare
RS_RS14430 -3.4 -11.0 anthranilate synthase component I compare
RS_RS16775 -3.4 -6.8 copper-translocating P-type ATPase compare
RS_RS11945 -3.4 -2.8 iron-sulfur cluster carrier protein ApbC compare
RS_RS13890 -3.4 -4.6 shikimate dehydrogenase compare
RS_RS13335 -3.2 -2.6 ATP:cob(I)alamin adenosyltransferase compare
RS_RS01735 -3.0 -1.7 S41 family peptidase compare
RS_RS12145 -3.0 -2.0 uroporphyrinogen-III C-methyltransferase compare
RS_RS12155 -2.9 -6.7 sulfate adenylyltransferase subunit CysD compare
RS_RS12150 -2.9 -3.4 sulfate adenylyltransferase subunit 1 compare
RS_RS06760 -2.8 -3.6 CysB family HTH-type transcriptional regulator compare
RS_RS07210 -2.8 -0.9 ribbon-helix-helix protein, CopG family compare
RS_RS07010 -2.8 -0.9 cell division protein FtsZ compare
RS_RS18515 -2.7 -16.1 APC family permease compare
RS_RS11780 -2.7 -4.8 NAD+ synthase compare
RS_RS16090 -2.7 -0.9 hypothetical protein compare
RS_RS00460 -2.6 -1.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
RS_RS01830 -2.6 -2.8 protoheme IX farnesyltransferase compare
RS_RS06315 -2.6 -2.1 PAS domain-containing sensor histidine kinase compare
RS_RS16315 -2.6 -0.8 hypothetical protein compare
RS_RS21285 -2.6 -0.8 type III secretion protein HrpB4 compare
RS_RS18685 -2.6 -1.5 Cd(II)/Pb(II)-responsive transcriptional regulator compare
RS_RS03465 -2.5 -2.4 glycosyl transferase compare
RS_RS25285 -2.5 -0.8 hypothetical protein compare
RS_RS03365 -2.5 -3.7 response regulator compare
RS_RS13455 -2.5 -1.7 DNA starvation/stationary phase protection protein compare
RS_RS08365 -2.4 -2.8 DUF2016 domain-containing protein compare
RS_RS12170 -2.4 -2.8 nitrite/sulfite reductase compare
RS_RS08045 -2.4 -1.7 DNA-binding response regulator compare
RS_RS10425 -2.4 -1.3 RNA polymerase sigma factor compare
RS_RS12160 -2.4 -1.1 phosphoadenylyl-sulfate reductase compare
RS_RS25805 -2.4 -1.9 hypothetical protein compare
RS_RS14675 -2.3 -3.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
RS_RS04505 -2.3 -5.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
RS_RS20255 -2.3 -1.8 DNA-binding response regulator compare
RS_RS01705 -2.2 -0.9 PTS fructose transporter subunit IIA compare
RS_RS21650 -2.2 -0.7 gluconokinase compare
RS_RS04510 -2.2 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RS_RS11355 -2.1 -9.0 D-amino acid dehydrogenase small subunit compare
RS_RS18615 -2.1 -0.7 hypothetical protein compare
RS_RS14690 -2.1 -1.4 PDZ domain-containing protein compare
RS_RS08050 -2.1 -9.8 PAS domain-containing sensor histidine kinase compare
RS_RS07930 -2.1 -2.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
RS_RS14670 -2.0 -5.1 cytochrome b compare
RS_RS02615 -2.0 -0.7 hypothetical protein compare
RS_RS18680 -2.0 -1.3 heavy metal translocating P-type ATPase compare
RS_RS01515 -2.0 -1.3 ferritin compare
RS_RS26135 -2.0 -1.8 DUF2946 domain-containing protein compare
RS_RS14405 -1.9 -1.3 murein transglycosylase compare
RS_RS08890 -1.9 -0.6 bifunctional nicotinamidase/pyrazinamidase compare
RS_RS02605 -1.9 -1.9 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase compare
RS_RS12855 -1.9 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
RS_RS14655 -1.8 -1.0 ClpXP protease specificity-enhancing factor compare
RS_RS06580 -1.8 -1.0 DUF47 domain-containing protein compare
RS_RS16755 -1.8 -1.4 ABC transporter ATP-binding protein compare
RS_RS07080 -1.8 -0.8 RIP metalloprotease RseP compare
RS_RS01400 -1.8 -3.0 thiol:disulfide interchange protein DsbA/DsbL compare
RS_RS08255 -1.8 -1.0 hypothetical protein compare
RS_RS12600 -1.8 -1.1 hypothetical protein compare
RS_RS12140 -1.7 -1.1 5-carboxymethyl-2-hydroxymuconate isomerase compare
RS_RS15295 -1.7 -1.9 DeoR/GlpR transcriptional regulator compare
RS_RS03100 -1.7 -0.5 recombination-associated protein RdgC compare
RS_RS08150 -1.7 -0.9 tRNA-Met compare
RS_RS05225 -1.7 -2.3 RNA polymerase sigma factor RpoE compare
RS_RS16195 -1.7 -1.0 hypothetical protein compare
RS_RS16730 -1.7 -0.5 hypothetical protein compare
RS_RS08465 -1.7 -0.5 HNH endonuclease compare
RS_RS07735 -1.7 -0.5 sulfite exporter TauE/SafE family protein compare
RS_RS08650 -1.6 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
RS_RS06285 -1.6 -1.1 sterol desaturase family protein compare
RS_RS06745 -1.6 -7.6 sulfate ABC transporter permease subunit CysT compare
RS_RS21290 -1.6 -1.0 HrpE/YscL family type III secretion apparatus protein compare
RS_RS10040 -1.6 -1.4 malate dehydrogenase compare
RS_RS11805 -1.6 -1.2 NAD(P)-dependent oxidoreductase compare
RS_RS06995 -1.6 -1.0 hypothetical protein compare
RS_RS10060 -1.5 -1.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
RS_RS05275 -1.5 -0.8 DNA repair protein RecO compare
RS_RS18155 -1.5 -2.1 phytanoyl-CoA dioxygenase compare
RS_RS13320 -1.5 -3.3 3-deoxy-7-phosphoheptulonate synthase compare
RS_RS12880 -1.5 -0.5 DNA-3-methyladenine glycosylase 2 family protein compare
RS_RS08865 -1.5 -1.4 hypothetical protein compare
RS_RS26095 -1.5 -0.5 hypothetical protein compare
RS_RS03305 -1.5 -0.7 type 4 prepilin peptidase 1 compare
RS_RS01825 -1.5 -2.7 heme A synthase compare
RS_RS05130 -1.4 -0.6 hypothetical protein compare
RS_RS09825 -1.4 -1.8 membrane protein compare
RS_RS02640 -1.4 -1.6 PhoH family protein compare
RS_RS05680 -1.4 -0.6 threonylcarbamoyl-AMP synthase compare
RS_RS00930 -1.4 -0.8 conjugal transfer protein TraR compare
RS_RS18760 -1.4 -3.1 DNA-binding protein compare
RS_RS05700 -1.4 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
RS_RS11290 -1.4 -0.4 4-carboxymuconolactone decarboxylase compare
RS_RS08330 -1.4 -0.9 efflux RND transporter periplasmic adaptor subunit compare
RS_RS11215 -1.4 -1.4 hypothetical protein compare
RS_RS17330 -1.4 -0.7 DNA-binding protein compare
RS_RS21300 -1.3 -0.4 type III secretion protein HrpB7 compare
RS_RS19690 -1.3 -0.6 Rrf2 family transcriptional regulator compare
RS_RS12295 -1.3 -6.2 quinolinate synthase compare
RS_RS20290 -1.3 -2.1 LysR family transcriptional regulator compare
RS_RS00845 -1.3 -1.4 short-chain dehydrogenase compare
RS_RS14570 -1.3 -2.5 glucan biosynthesis protein H compare
RS_RS07405 -1.3 -1.0 LysR family transcriptional regulator compare
RS_RS08010 -1.3 -1.4 DUF1488 domain-containing protein compare
RS_RS16930 -1.3 -2.1 hypothetical protein compare
RS_RS02170 -1.3 -0.7 hypothetical protein compare
RS_RS25745 -1.3 -1.2 HNH endonuclease compare
RS_RS01795 -1.3 -1.7 cytochrome c oxidase assembly protein compare
RS_RS03160 -1.3 -0.4 cytochrome c compare
RS_RS19675 -1.3 -1.5 DNA-binding response regulator compare
RS_RS00520 -1.3 -6.0 hypothetical protein compare
RS_RS12730 -1.3 -2.2 N-acetylmuramoyl-L-alanine amidase compare
RS_RS08675 -1.3 -1.2 peptidyl-prolyl cis-trans isomerase compare
RS_RS22315 -1.3 -0.9 hypothetical protein compare
RS_RS07680 -1.3 -2.6 phosphate ABC transporter, permease protein PstA compare
RS_RS18255 -1.2 -1.3 benzaldehyde dehydrogenase compare
RS_RS09740 -1.2 -0.4 tail protein X compare
RS_RS14035 -1.2 -0.8 sigma-54-dependent Fis family transcriptional regulator compare
RS_RS19525 -1.2 -1.6 efflux RND transporter periplasmic adaptor subunit compare
RS_RS06115 -1.2 -0.8 GTPase HflX compare
RS_RS00055 -1.2 -3.8 TetR family transcriptional regulator compare
RS_RS25095 -1.2 -0.4 membrane protein compare
RS_RS07640 -1.2 -0.7 DUF4149 domain-containing protein compare
RS_RS19535 -1.2 -0.9 HIT family protein compare
RS_RS13895 -1.2 -2.0 energy transducer TonB compare
RS_RS06070 -1.2 -0.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
RS_RS25030 -1.2 -2.0 RNA polymerase sigma factor compare
RS_RS18955 -1.2 -1.4 flagellar biosynthetic protein FliQ compare
RS_RS01785 -1.2 -6.5 cytochrome c oxidase subunit II compare
RS_RS02860 -1.2 -0.5 phosphoglycerate kinase compare
RS_RS10485 -1.2 -0.4 oxygen-binding protein (globin) compare
RS_RS18470 -1.2 -1.7 tRNA-Leu compare
RS_RS03535 -1.2 -0.5 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
RS_RS10430 -1.2 -1.3 DUF3619 domain-containing protein compare
RS_RS00465 -1.2 -1.9 phage holin family protein compare
RS_RS04405 -1.2 -0.8 hypothetical protein compare
RS_RS01680 -1.2 -0.4 hypothetical protein compare
RS_RS07915 -1.2 -0.5 3-hydroxybutyrate dehydrogenase compare
RS_RS13985 -1.2 -0.4 hemagglutinin compare
RS_RS14945 -1.2 -2.9 membrane protein compare
RS_RS03180 -1.1 -0.7 flavodoxin family protein compare
RS_RS04740 -1.1 -0.3 hypothetical protein compare
RS_RS22880 -1.1 -0.3 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
RS_RS20405 -1.1 -5.1 EamA/RhaT family transporter compare
RS_RS06470 -1.1 -1.8 tRNA pseudouridine(55) synthase TruB compare
RS_RS01790 -1.1 -6.9 cytochrome c oxidase subunit I compare
RS_RS23150 -1.1 -0.5 hypothetical protein compare
RS_RS00450 -1.1 -2.1 5-formyltetrahydrofolate cyclo-ligase compare
RS_RS24665 -1.1 -1.4 lipoprotein transmembrane compare
RS_RS09975 -1.1 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
RS_RS23265 -1.1 -0.3 hypothetical protein compare
RS_RS04690 -1.1 -1.8 molybdopterin adenylyltransferase compare
RS_RS09760 -1.1 -2.2 capsid scaffolding protein compare
RS_RS09100 -1.1 -4.0 voltage-gated chloride channel protein compare
RS_RS06225 -1.1 -2.7 sugar ABC transporter ATP-binding protein compare
RS_RS05240 -1.1 -0.9 PDZ domain-containing protein compare
RS_RS19745 -1.1 -1.1 hypothetical protein compare
RS_RS06830 -1.1 -2.1 haloacid dehalogenase type II compare
RS_RS01805 -1.1 -6.0 cytochrome c oxidase subunit 3 compare
RS_RS01995 -1.1 -0.7 RNase adaptor protein RapZ compare
RS_RS04030 -1.1 -1.7 membrane protein compare
RS_RS18670 -1.1 -0.3 nuclear transport factor 2 family protein compare
RS_RS25795 -1.1 -0.3 hypothetical protein compare
RS_RS01820 -1.1 -3.5 cytochrome c oxidase subunit I compare
RS_RS18160 -1.1 -1.4 hypothetical protein compare
RS_RS12175 -1.1 -1.1 sulfite exporter TauE/SafE family protein compare
RS_RS14890 -1.1 -1.9 type IV pilus secretin PilQ compare
RS_RS09250 -1.0 -2.2 NAD(P)/FAD-dependent oxidoreductase compare
RS_RS09990 -1.0 -0.7 3-isopropylmalate dehydrogenase compare
RS_RS10075 -1.0 -3.5 DUF2863 domain-containing protein compare
RS_RS07845 -1.0 -0.3 NAD(P)H:quinone oxidoreductase compare
RS_RS10065 -1.0 -3.0 aconitate hydratase AcnA compare
RS_RS14970 -1.0 -2.1 cytochrome c4 compare
RS_RS08385 -1.0 -1.5 hypothetical protein compare
RS_RS09095 -1.0 -1.5 DJ-1/PfpI family protein compare
RS_RS11790 -1.0 -0.9 hypothetical protein compare
RS_RS02795 -1.0 -2.1 pilin compare
RS_RS11295 -1.0 -1.0 3-oxoadipate enol-lactonase compare
RS_RS08360 -1.0 -1.6 hypothetical protein compare
RS_RS10660 -1.0 -5.0 aminopeptidase N compare
RS_RS06280 -1.0 -1.3 polysaccharide deacetylase family protein compare
RS_RS17205 -1.0 -1.7 cold-shock protein compare
RS_RS11580 -1.0 -2.8 type II/IV secretion system protein compare
RS_RS18335 -1.0 -4.5 peroxiredoxin compare
RS_RS02580 -1.0 -1.5 ribosomal RNA small subunit methyltransferase A compare
RS_RS02020 -1.0 -0.7 RNA polymerase sigma-54 factor compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Alanine in Ralstonia solanacearum GMI1000

For carbon source L-Alanine across organisms