Experiment set18S404 for Ralstonia solanacearum GMI1000

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
RS_RS02250 -5.2 -6.2 FAD-linked oxidase compare
RS_RS07885 -5.0 -1.7 chorismate synthase compare
RS_RS06650 -4.7 -3.2 pyridoxal phosphate-dependent aminotransferase compare
RS_RS08265 -4.4 -2.5 phosphoserine phosphatase SerB compare
RS_RS00275 -4.0 -1.4 dienelactone hydrolase compare
RS_RS04495 -4.0 -5.5 prephenate dehydratase compare
RS_RS14885 -3.8 -2.1 shikimate kinase compare
RS_RS12180 -3.8 -5.2 CysB family HTH-type transcriptional regulator compare
RS_RS04245 -3.6 -1.2 hypothetical protein compare
RS_RS09735 -3.5 -1.2 membrane protein compare
RS_RS00135 -3.4 -3.3 homoserine O-acetyltransferase compare
RS_RS01525 -3.4 -1.1 SPOR domain-containing protein compare
RS_RS04510 -3.3 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
RS_RS09740 -3.2 -1.1 tail protein X compare
RS_RS04490 -3.2 -3.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
RS_RS05680 -3.0 -1.0 threonylcarbamoyl-AMP synthase compare
RS_RS14860 -3.0 -8.0 glutamate synthase subunit alpha compare
RS_RS24735 -2.9 -4.0 hypothetical protein compare
RS_RS08210 -2.9 -1.0 peptidoglycan editing factor PgeF compare
RS_RS10780 -2.9 -1.6 hypothetical protein compare
RS_RS14865 -2.9 -4.0 transposase compare
RS_RS15365 -2.9 -3.2 AGE family epimerase/isomerase compare
RS_RS09835 -2.8 -3.3 glutamate racemase compare
RS_RS15470 -2.8 -1.3 hypothetical protein compare
RS_RS17655 -2.7 -2.6 hypothetical protein compare
RS_RS12515 -2.7 -1.6 hypothetical protein compare
RS_RS08960 -2.6 -0.9 GNAT family N-acetyltransferase compare
RS_RS06035 -2.6 -1.5 protein-L-isoaspartate O-methyltransferase compare
RS_RS06870 -2.6 -3.6 lysophospholipid transporter LplT compare
RS_RS26080 -2.6 -1.4 hypothetical protein compare
RS_RS23925 -2.6 -0.9 response regulator compare
RS_RS10045 -2.6 -0.9 CoA ester lyase compare
RS_RS06730 -2.6 -0.9 transporter compare
RS_RS16775 -2.5 -1.7 copper-translocating P-type ATPase compare
RS_RS26075 -2.5 -0.8 hypothetical protein compare
RS_RS22360 -2.4 -1.4 pilus assembly protein compare
RS_RS09750 -2.4 -1.6 hypothetical protein compare
RS_RS01735 -2.4 -1.4 S41 family peptidase compare
RS_RS07930 -2.4 -2.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
RS_RS12155 -2.4 -3.2 sulfate adenylyltransferase subunit CysD compare
RS_RS10160 -2.4 -1.1 isoprenylcysteine carboxylmethyltransferase family protein compare
RS_RS01245 -2.3 -1.6 DUF1254 domain-containing protein compare
RS_RS03455 -2.3 -1.8 glycosyltransferase family 2 protein compare
RS_RS18685 -2.3 -1.3 Cd(II)/Pb(II)-responsive transcriptional regulator compare
RS_RS09675 -2.3 -1.1 hypothetical protein compare
RS_RS12680 -2.3 -1.1 biopolymer transporter ExbD compare
RS_RS14490 -2.3 -0.8 thiol:disulfide interchange protein compare
RS_RS15770 -2.3 -1.5 MarR family transcriptional regulator compare
RS_RS14430 -2.2 -3.1 anthranilate synthase component I compare
RS_RS12290 -2.2 -4.1 nicotinate-nucleotide diphosphorylase (carboxylating) compare
RS_RS03790 -2.2 -1.2 membrane protein compare
RS_RS11005 -2.2 -3.4 nicotinate-nucleotide adenylyltransferase compare
RS_RS05760 -2.2 -1.5 methyl-accepting chemotaxis protein compare
RS_RS10000 -2.2 -1.1 3-isopropylmalate dehydratase large subunit compare
RS_RS04550 -2.2 -3.3 ADP-L-glycero-D-mannoheptose-6-epimerase compare
RS_RS08330 -2.2 -1.5 efflux RND transporter periplasmic adaptor subunit compare
RS_RS09435 -2.2 -1.2 AlpA family phage regulatory protein compare
RS_RS07805 -2.2 -1.2 hypothetical protein compare
RS_RS08545 -2.2 -1.4 phage tail protein compare
RS_RS00055 -2.1 -1.5 TetR family transcriptional regulator compare
RS_RS07450 -2.1 -1.2 hypothetical protein compare
RS_RS13110 -2.1 -3.4 hypothetical protein compare
RS_RS11495 -2.1 -1.2 lytic transglycosylase compare
RS_RS06890 -2.1 -0.7 DUF523 domain-containing protein compare
RS_RS10035 -2.1 -0.7 GntR family transcriptional regulator compare
RS_RS23055 -2.1 -1.0 hypothetical protein compare
RS_RS11790 -2.1 -1.6 hypothetical protein compare
RS_RS04780 -2.1 -1.2 DUF1484 domain-containing protein compare
RS_RS11300 -2.0 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
RS_RS01400 -2.0 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
RS_RS12465 -2.0 -1.0 hypothetical protein compare
RS_RS08985 -2.0 -0.7 hypothetical protein compare
RS_RS10880 -2.0 -0.7 DUF969 domain-containing protein compare
RS_RS00555 -2.0 -4.5 phosphomethylpyrimidine synthase compare
RS_RS05130 -2.0 -0.9 hypothetical protein compare
RS_RS02830 -2.0 -1.4 lipopolysaccharide heptosyltransferase II compare
RS_RS03220 -2.0 -3.0 bleomycin resistance family protein compare
RS_RS13050 -2.0 -0.7 DUF2840 domain-containing protein compare
RS_RS19535 -2.0 -0.7 HIT family protein compare
RS_RS00740 -2.0 -1.3 hypothetical protein compare
RS_RS00665 -2.0 -11.2 lauroyl acyltransferase compare
RS_RS12295 -2.0 -3.7 quinolinate synthase compare
RS_RS03465 -1.9 -1.3 glycosyl transferase compare
RS_RS19830 -1.9 -1.3 transcriptional regulator compare
RS_RS25770 -1.9 -0.6 hypothetical protein compare
RS_RS10375 -1.9 -1.1 polyribonucleotide nucleotidyltransferase compare
RS_RS13660 -1.9 -0.9 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha compare
RS_RS16090 -1.9 -0.6 hypothetical protein compare
RS_RS20930 -1.9 -1.5 translesion DNA synthesis-associated protein ImuA compare
RS_RS11945 -1.9 -1.6 iron-sulfur cluster carrier protein ApbC compare
RS_RS09080 -1.9 -0.6 2-oxo acid dehydrogenase subunit E2 compare
RS_RS13320 -1.9 -1.3 3-deoxy-7-phosphoheptulonate synthase compare
RS_RS15780 -1.9 -2.5 hypothetical protein compare
RS_RS11130 -1.9 -0.6 GatB/YqeY domain-containing protein compare
RS_RS04585 -1.8 -2.5 MetQ/NlpA family ABC transporter substrate-binding protein compare
RS_RS03100 -1.8 -0.6 recombination-associated protein RdgC compare
RS_RS09090 -1.8 -1.0 GALA protein compare
RS_RS22335 -1.8 -0.9 DUF3613 domain-containing protein compare
RS_RS12160 -1.8 -0.7 phosphoadenylyl-sulfate reductase compare
RS_RS11305 -1.8 -1.0 3-oxoadipyl-CoA thiolase compare
RS_RS08410 -1.8 -1.4 hypothetical protein compare
RS_RS17220 -1.8 -0.8 DNA-binding protein compare
RS_RS12880 -1.8 -0.6 DNA-3-methyladenine glycosylase 2 family protein compare
RS_RS08890 -1.8 -0.6 bifunctional nicotinamidase/pyrazinamidase compare
RS_RS08810 -1.8 -2.0 peptidyl-prolyl cis-trans isomerase compare
RS_RS19380 -1.8 -1.0 hypothetical protein compare
RS_RS14605 -1.7 -1.7 cytochrome o ubiquinol oxidase subunit I compare
RS_RS06285 -1.7 -1.2 sterol desaturase family protein compare
RS_RS21500 -1.7 -1.2 transcriptional regulator GcvA compare
RS_RS19150 -1.7 -0.6 transcriptional regulator compare
RS_RS02430 -1.7 -2.1 OsmC family protein compare
RS_RS25975 -1.7 -0.8 hypothetical protein compare
RS_RS22885 -1.7 -0.8 DNA-binding response regulator compare
RS_RS12175 -1.7 -1.1 sulfite exporter TauE/SafE family protein compare
RS_RS10435 -1.7 -3.1 DUF3106 domain-containing protein compare
RS_RS02650 -1.7 -0.8 hypothetical protein compare
RS_RS24985 -1.7 -0.6 hypothetical protein compare
RS_RS06280 -1.6 -1.1 polysaccharide deacetylase family protein compare
RS_RS14905 -1.6 -1.1 ferrous iron transporter B compare
RS_RS08205 -1.6 -1.1 RluA family pseudouridine synthase compare
RS_RS14840 -1.6 -5.3 ABC transporter permease compare
RS_RS16590 -1.6 -1.9 DUF3562 domain-containing protein compare
RS_RS02240 -1.6 -1.1 membrane protein compare
RS_RS06790 -1.6 -0.5 ribonuclease E inhibitor RraA compare
RS_RS14690 -1.6 -1.1 PDZ domain-containing protein compare
RS_RS22460 -1.6 -1.2 organic hydroperoxide resistance protein compare
RS_RS03360 -1.6 -0.5 response regulator compare
RS_RS06165 -1.6 -0.8 NAD-dependent deacylase compare
RS_RS07080 -1.6 -0.8 RIP metalloprotease RseP compare
RS_RS10445 -1.6 -0.9 permease compare
RS_RS08190 -1.6 -0.5 DUF465 domain-containing protein compare
RS_RS08035 -1.6 -1.1 oligopeptidase A compare
RS_RS01625 -1.6 -4.0 C4-dicarboxylate transporter 1 compare
RS_RS08665 -1.6 -1.1 tRNA-Val compare
RS_RS20120 -1.6 -0.7 ferredoxin protein compare
RS_RS10430 -1.6 -2.0 DUF3619 domain-containing protein compare
RS_RS11035 -1.6 -0.7 alkylhydroperoxidase compare
RS_RS05600 -1.6 -0.9 alpha/beta hydrolase compare
RS_RS18905 -1.6 -2.8 acyl-CoA thioesterase compare
RS_RS06930 -1.6 -1.1 glutathione ABC transporter permease GsiD compare
RS_RS06505 -1.6 -0.7 enoyl-CoA hydratase/isomerase family protein compare
RS_RS25500 -1.6 -0.5 hypothetical protein compare
RS_RS05770 -1.6 -0.5 GMP synthase compare
RS_RS06375 -1.5 -1.1 cell division protein ZapE compare
RS_RS00460 -1.5 -1.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
RS_RS05855 -1.5 -2.2 microcin C ABC transporter permease YejB compare
RS_RS14855 -1.5 -2.7 glutamate synthase subunit beta compare
RS_RS02515 -1.5 -0.9 tRNA dihydrouridine synthase DusB compare
RS_RS13245 -1.5 -0.7 formimidoylglutamase compare
RS_RS19165 -1.5 -9.8 TonB-dependent receptor compare
RS_RS10875 -1.5 -2.0 DUF979 domain-containing protein compare
RS_RS01620 -1.5 -0.7 ferredoxin compare
RS_RS12425 -1.5 -2.1 hypothetical protein compare
RS_RS07645 -1.5 -0.7 RNA-binding protein compare
RS_RS12150 -1.5 -2.3 sulfate adenylyltransferase subunit 1 compare
RS_RS26540 -1.5 -1.0 hypothetical protein compare
RS_RS22520 -1.5 -2.0 transcriptional regulator compare
RS_RS06685 -1.5 -0.7 fluoride efflux transporter CrcB compare
RS_RS09790 -1.5 -1.3 hypothetical protein compare
RS_RS07985 -1.5 -1.3 aldose 1-epimerase compare
RS_RS13965 -1.5 -1.2 membrane protein compare
RS_RS04505 -1.5 -2.0 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
RS_RS00785 -1.5 -1.4 ornithine--oxo-acid transaminase compare
RS_RS13455 -1.4 -1.0 DNA starvation/stationary phase protection protein compare
RS_RS08650 -1.4 -1.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
RS_RS25635 -1.4 -2.9 hypothetical protein compare
RS_RS13260 -1.4 -0.8 histidine utilization repressor compare
RS_RS03730 -1.4 -1.0 hypothetical protein compare
RS_RS12060 -1.4 -0.8 cell division protein ZapA compare
RS_RS07010 -1.4 -0.5 cell division protein FtsZ compare
RS_RS19185 -1.4 -1.3 MFS transporter compare
RS_RS08325 -1.4 -0.8 squalene synthase HpnD compare
RS_RS06185 -1.4 -1.2 methyl-accepting chemotaxis protein compare
RS_RS09825 -1.4 -1.2 membrane protein compare
RS_RS12065 -1.4 -2.9 EVE domain-containing protein compare
RS_RS14445 -1.4 -0.8 Anthranilate phosphoribosyltransferase 1 compare
RS_RS12675 -1.4 -1.6 MotA/TolQ/ExbB proton channel family protein compare
RS_RS07395 -1.4 -0.6 (2Fe-2S)-binding protein compare
RS_RS01040 -1.4 -0.7 transcriptional regulator compare
RS_RS09920 -1.4 -0.6 nodulation factor ABC transporter ATP-binding protein NodI compare
RS_RS11645 -1.4 -1.4 heavy metal-responsive transcriptional regulator compare
RS_RS12145 -1.4 -0.9 uroporphyrinogen-III C-methyltransferase compare
RS_RS14035 -1.4 -0.9 sigma-54-dependent Fis family transcriptional regulator compare
RS_RS00340 -1.3 -1.0 DNA-protecting protein DprA compare
RS_RS16910 -1.3 -1.3 hypothetical protein compare
RS_RS10040 -1.3 -0.9 malate dehydrogenase compare
RS_RS07135 -1.3 -1.1 NfeD family protein compare
RS_RS05020 -1.3 -3.7 LacI family transcriptional regulator compare
RS_RS13890 -1.3 -2.9 shikimate dehydrogenase compare
RS_RS07570 -1.3 -1.5 DUF2892 domain-containing protein compare
RS_RS04740 -1.3 -0.4 hypothetical protein compare
RS_RS16025 -1.3 -0.6 hypothetical protein compare
RS_RS03405 -1.3 -0.9 bifunctional pyrimidine operon transcriptional regulator/uracil phosphoribosyltransferase compare
RS_RS03160 -1.3 -0.4 cytochrome c compare
RS_RS06805 -1.3 -2.1 GALA protein compare
RS_RS03845 -1.3 -1.1 flavin reductase compare
RS_RS09145 -1.3 -2.6 hypothetical protein compare
RS_RS01515 -1.3 -0.9 ferritin compare
RS_RS04980 -1.3 -2.0 4Fe-4S dicluster domain-containing protein compare
RS_RS03675 -1.3 -1.2 NAD(P)-dependent oxidoreductase compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum GMI1000 in carbon source experiments

For carbon source D,L-Malic Acid across organisms