Experiment set18S32 for Pseudomonas syringae pv. syringae B728a

Compare to:

DMSO

200 most important genes:

  gene name fitness t score description  
Psyr_5089 -4.9 -8.4 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_5088 -4.4 -10.3 regulatory protein, LuxR:Response regulator receiver compare
Psyr_5091 -4.1 -19.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_5090 -3.8 -10.9 ABC transporter compare
Psyr_2139 -2.5 -8.2 Kef-type potassium/proton antiporter, CPA2 family compare
Psyr_5050 -2.3 -3.8 transcriptional regulator, LysR family compare
Psyr_4115 -2.2 -2.1 phosphoheptose isomerase compare
Psyr_1749 -2.1 -7.0 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_5040 -2.1 -13.9 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3262 -2.1 -2.4 dnaK suppressor protein, putative compare
Psyr_1762 -2.0 -9.9 conserved hypothetical protein compare
Psyr_3906 -2.0 -2.6 regulatory protein, DeoR compare
Psyr_5041 -1.9 -10.7 phosphate ABC transporter substrate-binding protein, PhoT family compare
Psyr_1638 -1.9 -2.2 RNAse E compare
Psyr_1613 -1.8 -2.7 septum site-determining protein MinC compare
Psyr_5039 -1.8 -10.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3698 -1.8 -2.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_1410 -1.7 -3.5 Holliday junction DNA helicase RuvB compare
Psyr_2900 -1.7 -4.3 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_3013 -1.7 -1.8 magnesium chelatase subunit ChlD compare
Psyr_4136 -1.7 -2.1 BolA-like protein compare
Psyr_1419 -1.6 -2.1 preQ(0) biosynthesis protein QueC compare
Psyr_5034 -1.5 -7.5 CBS:Protein of unknown function DUF21:Transporter-associated region compare
Psyr_0857 -1.4 -2.1 [SSU ribosomal protein S18P]-alanine acetyltransferase compare
Psyr_1400 -1.4 -9.4 outer membrane porin compare
Psyr_2897 -1.4 -3.7 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3681 -1.3 -1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_0293 -1.3 -6.7 Polyphosphate kinase compare
Psyr_3193 -1.3 -1.2 Transcription factor jumonji, jmjC compare
Psyr_4842 -1.2 -5.0 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_2134 -1.2 -2.4 protein of unknown function DUF903 compare
Psyr_0575 -1.2 -1.4 protease FtsH subunit HflC compare
Psyr_5067 -1.2 -1.8 conserved hypothetical protein compare
Psyr_3675 -1.2 -2.3 adenosylcobinamide kinase compare
Psyr_4839 -1.2 -6.4 hypothetical protein compare
Psyr_3886 -1.2 -1.3 methionyl-tRNA synthetase compare
Psyr_0574 -1.2 -2.1 protease FtsH subunit HflK compare
Psyr_4566 -1.2 -4.0 Peptidase M23B compare
Psyr_3287 -1.1 -1.7 DNA topoisomerase I compare
Psyr_1642 -1.1 -3.2 Maf-like protein compare
Psyr_0493 -1.1 -1.6 CheW-like protein compare
Psyr_4051 -1.1 -2.9 transcriptional regulator, ArsR family compare
Psyr_2253 -1.1 -3.1 Phosphonate metabolism compare
Psyr_0215 -1.1 -5.2 Exodeoxyribonuclease III xth compare
Psyr_0497 -1.0 -2.0 LamB/YcsF compare
Psyr_4941 -1.0 -2.2 NUDIX hydrolase compare
Psyr_4567 -1.0 -2.8 Protein of unknown function UPF0075 compare
Psyr_4455 -1.0 -2.3 conserved hypothetical protein compare
Psyr_4161 -1.0 -1.8 Rod shape-determining protein MreD compare
Psyr_4887 -1.0 -5.0 Peptidase S41A, C-terminal protease compare
Psyr_5038 -1.0 -5.7 phosphate ABC transporter ATP-binding protein, PhoT family compare
Psyr_0579 -1.0 -4.6 RNAse R compare
Psyr_3808 -1.0 -1.8 hypothetical protein compare
Psyr_2464 -1.0 -3.8 methionine synthase (B12-dependent) compare
Psyr_3427 -1.0 -2.3 conserved hypothetical protein compare
Psyr_4730 -1.0 -1.6 FecR protein compare
Psyr_4417 -1.0 -1.0 Ferredoxin--nitrite reductase compare
Psyr_3667 -0.9 -2.5 conserved hypothetical protein compare
Psyr_4843 -0.9 -2.4 NUDIX hydrolase compare
Psyr_4830 -0.9 -1.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2840 -0.9 -2.5 hypothetical protein compare
Psyr_0849 -0.9 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0976 -0.9 -1.8 Malate:quinone-oxidoreductase compare
Psyr_4754 -0.9 -0.8 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0885 -0.9 -1.9 conserved hypothetical protein compare
Psyr_3882 -0.9 -1.6 conserved hypothetical protein compare
Psyr_0364 -0.9 -3.0 sodium/proton antiporter, NhaA family compare
Psyr_0291 -0.9 -2.9 DedA compare
Psyr_4902 -0.8 -1.1 Protein of unknown function DUF495 compare
Psyr_0099 -0.8 -1.3 Conserved hypothetical protein compare
Psyr_1953 -0.8 -1.7 conserved hypothetical protein compare
Psyr_5131 -0.8 -2.0 16S rRNA m(7)G-527 methyltransferase compare
Psyr_2137 -0.8 -1.3 molybdopterin molybdochelatase compare
Psyr_4416 -0.8 -1.5 precorrin-8X methylmutase compare
Psyr_3282 -0.8 -2.5 transcriptional regulator, TetR family compare
Psyr_1816 -0.8 -2.4 transcriptional regulator, GntR family compare
Psyr_2415 -0.8 -3.1 hypothetical protein compare
Psyr_4019 -0.8 -2.4 H-NS family protein MvaT compare
Psyr_4415 -0.8 -3.2 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase compare
Psyr_2151 -0.8 -1.2 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_0375 -0.8 -4.4 prolyl aminopeptidase, Serine peptidase, MEROPS family S33 compare
Psyr_2262 -0.7 -2.2 Peptidase M20:Peptidase M20 compare
Psyr_1850 -0.7 -2.3 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase compare
Psyr_4750 -0.7 -2.0 cell division ATP-binding protein FtsE compare
Psyr_4350 -0.7 -2.0 Protein of unknown function DUF218 compare
Psyr_4716 -0.7 -2.0 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_4420 -0.7 -2.1 precorrin-6A reductase compare
Psyr_3795 -0.7 -2.2 hypothetical protein compare
Psyr_0153 -0.7 -1.9 conserved hypothetical protein compare
Psyr_3585 -0.7 -2.1 Sua5/YciO/YrdC/YwlC compare
Psyr_4464 -0.7 -1.0 lipoprotein, putative compare
Psyr_4167 -0.7 -2.7 Rare lipoprotein A compare
Psyr_2818 -0.7 -3.3 hypothetical protein compare
Psyr_2256 -0.7 -2.8 ABC transporter compare
Psyr_1666 -0.7 -3.1 Sporulation related protein compare
Psyr_0983 -0.7 -2.7 Protein of unknown function DUF159 compare
Psyr_0573 -0.7 -2.9 GTP-binding protein HflX compare
Psyr_0982 -0.7 -2.0 conserved hypothetical protein compare
Psyr_4141 -0.7 -1.9 ABC transporter compare
Psyr_3053 -0.7 -2.6 conserved hypothetical protein compare
Psyr_2851 -0.7 -1.4 conserved hypothetical protein compare
Psyr_4100 -0.7 -2.6 D-alanine--D-alanine ligase compare
Psyr_0425 -0.7 -1.9 Beta-ketoacyl synthase:Beta-ketoacyl synthase compare
Psyr_4414 -0.7 -1.8 precorrin-3 methyltransferase compare
Psyr_1614 -0.7 -0.6 lipid A biosynthesis acyltransferase compare
Psyr_4882 -0.7 -2.7 protein translocase subunit secB compare
Psyr_2201 -0.7 -1.6 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
Psyr_3820 -0.7 -2.2 conserved domain protein compare
Psyr_1418 -0.7 -1.5 Radical SAM compare
Psyr_4788 -0.7 -1.5 lipoprotein, putative compare
Psyr_0528 -0.7 -1.0 Carbamoyltransferase compare
Psyr_2017 -0.7 -3.0 Heat shock protein Hsp90:ATP-binding region, ATPase-like protein compare
Psyr_0017 -0.7 -2.1 16S rRNA m(5)C-967 methyltransferase compare
Psyr_3678 -0.7 -2.6 adenosylcobinamide-phosphate synthase compare
Psyr_2487 -0.7 -2.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_4138 -0.7 -1.8 Toluene tolerance compare
Psyr_3554 -0.7 -1.1 Carbon storage regulator compare
Psyr_3373 -0.7 -2.5 conserved hypothetical protein compare
Psyr_4581 -0.6 -1.4 anthranilate synthase, component II compare
Psyr_1160 -0.6 -4.0 Uncharacterized protein conserved in bacteria-like protein compare
Psyr_0666 -0.6 -2.3 transport system permease protein compare
Psyr_5096 -0.6 -2.0 hypothetical protein compare
Psyr_2317 -0.6 -2.1 CDS compare
Psyr_4789 -0.6 -1.9 lipoprotein, putative compare
Psyr_3425 -0.6 -1.4 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_4158 -0.6 -3.1 conserved hypothetical protein compare
Psyr_3793 -0.6 -2.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1755 -0.6 -3.0 ABC transporter compare
Psyr_4593 -0.6 -1.8 sigma factor domain protein compare
Psyr_4781 -0.6 -2.8 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224 compare
Psyr_4418 -0.6 -0.9 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_3637 -0.6 -3.9 Glycosyl transferase, family 4 compare
Psyr_0919 -0.6 -4.1 Chromosome segregation ATPase-like protein compare
Psyr_4270 -0.6 -2.4 serine hydroxymethyltransferase compare
Psyr_1069 -0.6 -2.2 molybdopterin synthase subunit MoaE compare
Psyr_2339 -0.6 -2.3 hypothetical protein compare
Psyr_1998 -0.6 -1.4 lipoprotein, putative compare
Psyr_5065 -0.6 -3.1 ATP-dependent DNA helicase UvrD compare
Psyr_0268 -0.6 -1.3 DSBA oxidoreductase compare
Psyr_2196 -0.6 -1.5 Urease accessory protein UreG compare
Psyr_1109 -0.6 -2.6 6-phosphogluconate dehydratase compare
Psyr_0319 -0.6 -2.6 conserved hypothetical protein compare
Psyr_2347 -0.6 -1.4 hypothetical protein compare
Psyr_2848 -0.6 -3.0 hypothetical protein compare
Psyr_4169 -0.6 -1.7 4-carboxymuconolactone decarboxylase compare
Psyr_0699 -0.6 -1.1 CDS compare
Psyr_1663 -0.6 -2.1 phosphoribosylanthranilate isomerase compare
Psyr_0393 -0.6 -1.5 Protein of unknown function DUF971 compare
Psyr_2675 -0.6 -2.0 transcriptional regulator, GntR family compare
Psyr_3183 -0.6 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Psyr_3791 -0.6 -1.0 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_0176 -0.6 -1.3 conserved hypothetical protein compare
Psyr_1268 -0.6 -0.9 extracellular solute-binding protein, family 3:SLT compare
Psyr_3672 -0.6 -1.0 cobalamin-5'-phosphate synthase compare
Psyr_0914 -0.5 -3.1 Glycosyl transferase, group 1 compare
Psyr_4178 -0.5 -1.9 tRNA pseudouridine synthase B compare
Psyr_4362 -0.5 -1.2 Rare lipoprotein A compare
Psyr_3458 -0.5 -0.9 Flagellar hook-basal body complex protein FliE compare
Psyr_3290 -0.5 -1.6 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_0365 -0.5 -2.4 protein of unknown function DUF886 compare
Psyr_4623 -0.5 -3.0 Aminoglycoside phosphotransferase compare
Psyr_0395 -0.5 -1.5 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_1274 -0.5 -2.0 transferase hexapeptide repeat protein compare
Psyr_2561 -0.5 -1.8 hypothetical protein compare
Psyr_2128 -0.5 -2.2 Protein of unknown function DUF6 compare
Psyr_1543 -0.5 -2.9 Peptidase M48, Ste24p compare
Psyr_2249 -0.5 -2.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3674 -0.5 -0.7 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_2877 -0.5 -2.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_3142 -0.5 -1.2 general secretion pathway protein N, putative compare
Psyr_2411 -0.5 -2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_2014 -0.5 -1.3 conserved hypothetical protein compare
Psyr_1370 -0.5 -1.8 tRNA pseudouridine synthase D, TruD compare
Psyr_4087 -0.5 -0.8 Protein of unknown function DUF520 compare
Psyr_3357 -0.5 -1.7 transcriptional regulator, LysR family compare
Psyr_1708 -0.5 -2.9 L-arabinonate dehydratase compare
Psyr_1187 -0.5 -1.2 type III chaperone protein ShcE compare
Psyr_1235 -0.5 -2.3 serine O-acetyltransferase compare
Psyr_3932 -0.5 -1.4 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_1455 -0.5 -2.0 conserved hypothetical protein compare
Psyr_4804 -0.5 -1.2 conserved hypothetical protein compare
Psyr_4093 -0.5 -1.7 glutamate N-acetyltransferase compare
Psyr_4454 -0.5 -1.3 HupE/UreJ protein compare
Psyr_4122 -0.5 -1.6 AFG1-like ATPase compare
Psyr_0788 -0.5 -2.4 Response regulator receiver compare
Psyr_0920 -0.5 -3.9 Glycosyl transferase, group 1 compare
Psyr_1872 -0.5 -1.7 conserved hypothetical protein compare
Psyr_1002 -0.5 -1.9 nucleoside ABC transporter ATP-binding protein compare
Psyr_4466 -0.5 -1.3 Thioredoxin compare
Psyr_1357 -0.5 -1.4 RNase HII compare
Psyr_0278 -0.5 -2.3 ABC-3 compare
Psyr_2980 -0.5 -1.1 UDP-glucose pyrophosphorylase compare
Psyr_0809 -0.5 -2.6 stress protein compare
Psyr_0059 -0.5 -2.9 HemY, N-terminal:HemY, N-terminal:HemY, N-terminal compare
Psyr_2520 -0.5 -1.2 SOS-response transcriptional repressor, LexA compare
Psyr_4070 -0.5 -2.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1903 -0.5 -1.5 conserved hypothetical protein compare
Psyr_4845 -0.5 -1.2 conserved hypothetical protein compare
Psyr_0772 -0.5 -2.1 Protein of unknown function DUF1355 compare
Psyr_0936 -0.5 -3.0 Glycosyl transferase, group 1 compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Dimethyl Sulfoxide across organisms