Experiment set18S32 for Pseudomonas syringae pv. syringae B728a

Compare to:

DMSO

200 most detrimental genes:

  gene name fitness t score description  
Psyr_0383 +1.9 2.5 Twin-arginine translocation protein TatB compare
Psyr_3567 +1.7 3.7 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_1269 +1.6 4.6 phosphoribosylformylglycinamidine synthase compare
Psyr_1668 +1.5 5.9 amidophosphoribosyltransferase compare
Psyr_0726 +1.2 4.5 ribosomal large subunit pseudouridine synthase D compare
Psyr_1121 +1.1 2.0 6-phosphogluconolactonase compare
Psyr_3952 +1.1 3.6 conserved hypothetical protein compare
Psyr_3555 +1.1 1.9 aspartate kinase compare
Psyr_4874 +1.1 1.6 ABC transporter compare
Psyr_3905 +1.0 5.9 glycerol kinase compare
Psyr_3934 +1.0 2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_2562 +1.0 3.3 hypothetical protein compare
Psyr_0350 +1.0 2.0 ABC transporter compare
Psyr_2386 +0.9 2.8 hypothetical protein compare
Psyr_4491 +0.9 2.1 Deoxyribose-phosphate aldolase compare
Psyr_3597 +0.9 1.7 ABC transporter compare
Psyr_1333 +0.9 3.5 UBA/THIF-type NAD/FAD binding fold protein compare
Psyr_1573 +0.9 2.3 cyclic nucleotide-binding protein compare
Psyr_4480 +0.9 1.2 outer membrane transport energization protein TonB compare
Psyr_3462 +0.9 1.9 conserved hypothetical protein compare
Psyr_3701 +0.9 2.0 thioredoxin, putative compare
Psyr_1378 +0.8 1.3 RecA protein compare
Psyr_3904 +0.8 5.0 Major intrinsic protein compare
Psyr_2118 +0.8 3.6 protein of unknown function DUF883 compare
Psyr_4634 +0.8 1.3 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_4380 +0.8 1.5 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_4637 +0.8 3.4 acyl-phosphate glycerol-3-phosphate acyltransferase compare
Psyr_1748 +0.8 3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1021 +0.8 3.0 Short-chain dehydrogenase/reductase SDR compare
Psyr_1662 +0.8 3.9 tRNA pseudouridine synthase compare
Psyr_3896 +0.8 1.8 BFD-like [2Fe-2S]-binding region compare
Psyr_1154 +0.8 3.1 Copper/Zinc superoxide dismutase compare
Psyr_0373 +0.8 1.4 CDS compare
Psyr_1227 +0.8 0.9 Queuosine biosynthesis protein compare
Psyr_0453 +0.7 4.6 16S rRNA m(3)U-1498 methyltransferase compare
Psyr_4932 +0.7 5.6 agmatine deiminase compare
Psyr_0541 +0.7 1.8 Small multidrug resistance protein compare
Psyr_1019 +0.7 3.8 Dihydroneopterin aldolase compare
Psyr_4404 +0.7 2.2 tRNA-U20-dihydrouridine synthase compare
Psyr_4300 +0.7 1.9 DNA polymerase III, epsilon subunit compare
Psyr_1424 +0.7 2.6 Peptidase S24, S26A and S26B compare
Psyr_3423 +0.7 5.4 coproporphyrinogen III oxidase, anaerobic compare
Psyr_0831 +0.7 1.4 Two-component response regulator CbrB compare
Psyr_4911 +0.7 3.3 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_4835 +0.7 3.4 imidazolonepropionase compare
Psyr_4801 +0.7 2.2 Outer membrane efflux protein compare
Psyr_1968 +0.7 2.2 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3199 +0.7 1.1 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3665 +0.7 2.4 conserved hypothetical protein compare
Psyr_0875 +0.7 2.4 outer membrane transport energization protein TonB compare
Psyr_4860 +0.7 1.0 Integrase, catalytic region compare
Psyr_1946 +0.7 1.8 diaminobutyrate aminotransferase apoenzyme compare
Psyr_4833 +0.6 2.3 histidine ammonia-lyase compare
Psyr_3837 +0.6 1.6 conserved hypothetical protein compare
Psyr_3874 +0.6 3.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3233 +0.6 1.8 FMN reductase compare
Psyr_3958 +0.6 4.3 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_3879 +0.6 1.9 hypothetical protein compare
Psyr_4112 +0.6 4.1 Protein of unknown function UPF0011 compare
Psyr_2278 +0.6 2.4 luciferase compare
Psyr_4895 +0.6 1.8 conserved hypothetical protein compare
Psyr_2225 +0.6 2.0 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_3876 +0.6 5.2 amino acid ABC transporter membrane protein 2, PAAT family compare
Psyr_4933 +0.6 3.1 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_3571 +0.6 3.7 L-arginine-binding protein / L-ornithine-binding protein compare
Psyr_3742 +0.6 4.0 FAD dependent oxidoreductase:Protein of unknown function DUF752 compare
Psyr_1864 +0.6 2.0 spermidine synthase compare
Psyr_4955 +0.6 1.2 Protein of unknown function DUF1316 compare
Psyr_0435 +0.6 1.1 membrane protein, putative compare
Psyr_3889 +0.6 1.6 conserved hypothetical protein compare
Psyr_0623 +0.6 1.8 Peptidase S24, S26A and S26B compare
Psyr_4259 +0.6 4.6 ATP-dependent protease, putative compare
Psyr_1097 +0.6 1.0 glycine cleavage system H protein compare
Psyr_0525 +0.6 2.9 Lipopolysaccharide kinase compare
Psyr_3673 +0.6 0.6 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_4674 +0.6 2.7 Radical SAM compare
Psyr_0475 +0.6 1.4 Protein of unknown function YGGT compare
Psyr_3875 +0.6 3.9 amino acid ABC transporter membrane protein 1, PAAT family compare
Psyr_0169 +0.6 1.7 Hsp33 protein compare
Psyr_4381 +0.6 4.6 arginine decarboxylase compare
Psyr_2927 +0.6 1.8 transcriptional regulator, TetR family compare
Psyr_4183 +0.5 0.6 protein translocase subunit secG compare
Psyr_4836 +0.5 3.4 N-formylglutamate deformylase compare
Psyr_0178 +0.5 1.5 regulator of nucleoside diphosphate kinase compare
Psyr_1277 +0.5 1.7 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_4498 +0.5 1.2 outer membrane transport energization protein ExbD compare
Psyr_2244 +0.5 1.4 DNA topoisomerase III compare
Psyr_3036 +0.5 1.7 transcriptional regulator, TetR family compare
Psyr_3082 +0.5 3.2 MltA-interacting MipA compare
Psyr_3779 +0.5 1.5 GCN5-related N-acetyltransferase compare
Psyr_3878 +0.5 2.8 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_2121 +0.5 1.8 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_2990 +0.5 2.0 conserved hypothetical protein compare
Psyr_2719 +0.5 2.1 transcriptional regulator, TetR family compare
Psyr_0690 +0.5 2.1 3-hydroxyisobutyrate dehydrogenase compare
Psyr_2894 +0.5 1.6 conserved hypothetical protein compare
Psyr_1335 +0.5 2.6 Aminotransferase, class V compare
Psyr_3591 +0.5 1.6 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_0785 +0.5 1.5 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_4908 +0.5 1.8 conserved hypothetical protein compare
Psyr_1936 +0.5 2.1 tRNA-U16,U17-dihydrouridine synthase compare
Psyr_4485 +0.5 3.0 hypothetical protein compare
Psyr_2619 +0.5 2.0 diaminobutyrate aminotransferase apoenzyme compare
Psyr_4388 +0.5 1.7 Response regulator receiver compare
Psyr_4786 +0.5 0.6 hypothetical protein compare
Psyr_3397 +0.5 2.1 transcriptional regulator, LysR family compare
Psyr_1609 +0.5 2.5 Aspartyl aminopeptidase compare
Psyr_1507 +0.5 1.8 hypothetical protein compare
Psyr_3566 +0.5 2.1 transcriptional regulator, AraC family compare
Psyr_0673 +0.5 2.0 nucleoside ABC transporter ATP-binding protein compare
Psyr_0170 +0.5 1.4 heat shock protein Hsp15 compare
Psyr_3023 +0.5 1.2 conserved hypothetical protein compare
Psyr_1596 +0.5 1.4 Helix-turn-helix motif protein compare
Psyr_1275 +0.5 2.2 Protein of unknown function DUF1289 compare
Psyr_3250 +0.5 2.0 Helix-turn-helix motif protein compare
Psyr_0834 +0.5 1.9 Glutamyl-tRNA synthetase, class Ic compare
Psyr_1528 +0.5 1.6 Arc-like DNA binding protein compare
Psyr_1152 +0.5 1.5 transcriptional regulator, ArsR family compare
Psyr_4258 +0.5 3.0 conserved hypothetical protein compare
Psyr_2468 +0.5 1.0 Enoyl-CoA hydratase/isomerase compare
Psyr_5036 +0.5 1.7 Response regulator receiver compare
Psyr_4967 +0.5 2.0 conserved hypothetical protein compare
Psyr_1099 +0.5 3.0 Response regulator receiver compare
Psyr_4861 +0.5 2.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4473 +0.5 2.7 OmpW compare
Psyr_2039 +0.5 1.3 Fimbrial protein compare
Psyr_0385 +0.5 1.9 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0822 +0.5 0.4 1-phosphofructokinase compare
Psyr_2830 +0.5 1.6 conserved hypothetical protein compare
Psyr_2508 +0.5 1.7 transcriptional regulator, IclR family compare
Psyr_2255 +0.5 1.2 ABC transporter compare
Psyr_2203 +0.5 2.7 amino acid/amide ABC transporter membrane protein 2, HAAT family compare
Psyr_4256 +0.5 1.9 conserved hypothetical protein compare
Psyr_2275 +0.5 1.9 glutamate synthase (NADPH) GltB3 subunit compare
Psyr_3104 +0.5 1.5 phosphate ABC transporter membrane protein 2, PhoT family compare
Psyr_1747 +0.4 1.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2393 +0.4 1.4 Flavin reductase-like protein compare
Psyr_0955 +0.4 2.6 membrane protein, putative compare
Psyr_4495 +0.4 2.6 Beta-lactamase compare
Psyr_4490 +0.4 1.1 transcriptional regulator, DeoR family compare
Psyr_0144 +0.4 2.2 transcriptional regulator, AsnC family compare
Psyr_0793 +0.4 1.8 conserved hypothetical protein compare
Psyr_0250 +0.4 1.4 conserved hypothetical protein compare
Psyr_4912 +0.4 2.5 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_1153 +0.4 2.2 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_3873 +0.4 2.2 ATP-dependent DNA ligase:ATP-dependent DNA ligase compare
Psyr_4440 +0.4 1.7 Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_2806 +0.4 1.3 Bacteriophage Lambda NinG compare
Psyr_2150 +0.4 1.7 protein of unknown function DUF903 compare
Psyr_1334 +0.4 1.1 Cysteine desulfuration protein SufE compare
Psyr_1024 +0.4 0.6 Flavodoxin/nitric oxide synthase compare
Psyr_3947 +0.4 1.2 Methyltransferase, putative compare
Psyr_3116 +0.4 1.9 transcriptional regulator, CdaR family compare
Psyr_3946 +0.4 1.4 Proteobacterial methyltransferase compare
Psyr_0550 +0.4 1.5 Protein of unknown function UPF0227 compare
Psyr_4949 +0.4 2.2 conserved hypothetical protein compare
Psyr_2114 +0.4 2.1 two component transcriptional regulator, LuxR family compare
Psyr_5063 +0.4 2.0 conserved domain protein compare
Psyr_0349 +0.4 1.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1907 +0.4 0.7 GTP cyclohydrolase I compare
Psyr_2572 +0.4 0.7 ribose-5-phosphate isomerase compare
Psyr_3967 +0.4 1.2 membrane protein TctB, putative compare
Psyr_0470 +0.4 1.9 conserved hypothetical protein compare
Psyr_3627 +0.4 1.5 OsmC-like protein compare
Psyr_3081 +0.4 0.9 Secretion protein HlyD compare
Psyr_1966 +0.4 1.3 Peptidase M19, renal dipeptidase compare
Psyr_3324 +0.4 1.4 transcriptional regulator, TetR family compare
Psyr_4241 +0.4 2.4 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_0864 +0.4 1.3 Protein of unknown function DUF393 compare
Psyr_4648 +0.4 2.2 hypothetical protein compare
Psyr_0441 +0.4 1.2 conserved hypothetical protein compare
Psyr_3867 +0.4 0.9 hypothetical protein compare
Psyr_3695 +0.4 3.0 RelA/SpoT protein compare
Psyr_3594 +0.4 2.0 membrane protein-like protein compare
Psyr_0411 +0.4 3.6 glutamate synthase (NADPH) large subunit compare
Psyr_4130 +0.4 3.0 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_3026 +0.4 1.8 transcriptional regulator, TetR family compare
Psyr_3842 +0.4 1.6 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_1718 +0.4 1.5 von Willebrand factor, type A compare
Psyr_4260 +0.4 2.1 conserved hypothetical protein compare
Psyr_3420 +0.4 1.5 conserved hypothetical protein compare
Psyr_3001 +0.4 2.0 Glycosyl transferase, family 2 compare
Psyr_4062 +0.4 1.7 Pyridoxamine 5'-phosphate oxidase-related protein compare
Psyr_3658 +0.4 2.2 Rhodanese-like protein compare
Psyr_2802 +0.4 1.7 lipoprotein, putative compare
Psyr_0670 +0.4 1.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_4910 +0.4 1.3 hypothetical protein compare
Psyr_2690 +0.4 2.0 Glycosyl transferase, family 2 compare
Psyr_2488 +0.4 1.8 hypothetical protein compare
Psyr_2617 +0.4 1.5 Secretion protein HlyD compare
Psyr_4722 +0.4 1.8 conserved hypothetical protein compare
Psyr_3498 +0.4 2.7 Conserved hypothetical protein 730 compare
Psyr_2507 +0.4 1.0 Endoribonuclease L-PSP compare
Psyr_3755 +0.4 0.8 conserved hypothetical protein compare
Psyr_1381 +0.4 1.8 conserved hypothetical protein compare
Psyr_0889 +0.4 1.6 SpoVT/AbrB-like protein compare
Psyr_0774 +0.4 1.2 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_0345 +0.4 1.5 Secretion protein HlyD compare
Psyr_2360 +0.4 0.6 CBS compare
Psyr_0070 +0.4 0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Dimethyl Sulfoxide across organisms