Experiment set18S31 for Pseudomonas syringae pv. syringae B728a

Compare to:

DMSO

200 most important genes:

  gene name fitness t score description  
Psyr_5088 -5.0 -11.1 regulatory protein, LuxR:Response regulator receiver compare
Psyr_5091 -4.0 -17.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_5089 -3.9 -6.2 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_3013 -3.7 -2.5 magnesium chelatase subunit ChlD compare
Psyr_5090 -3.3 -8.8 ABC transporter compare
Psyr_2139 -2.8 -9.4 Kef-type potassium/proton antiporter, CPA2 family compare
Psyr_2900 -2.3 -4.4 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_3698 -2.2 -2.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4116 -2.2 -2.1 Transport-associated protein compare
Psyr_5040 -1.9 -12.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1749 -1.9 -6.9 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_5135 -1.9 -2.1 Protein of unknown function DUF37 compare
Psyr_5039 -1.9 -11.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4140 -1.8 -2.4 Protein of unknown function DUF140 compare
Psyr_5041 -1.7 -9.3 phosphate ABC transporter substrate-binding protein, PhoT family compare
Psyr_1410 -1.7 -3.4 Holliday junction DNA helicase RuvB compare
Psyr_5034 -1.7 -8.1 CBS:Protein of unknown function DUF21:Transporter-associated region compare
Psyr_0493 -1.7 -2.7 CheW-like protein compare
Psyr_4843 -1.5 -4.9 NUDIX hydrolase compare
Psyr_2201 -1.5 -3.7 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
Psyr_3674 -1.5 -2.2 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_0575 -1.5 -1.4 protease FtsH subunit HflC compare
Psyr_0215 -1.5 -6.7 Exodeoxyribonuclease III xth compare
Psyr_1317 -1.5 -2.1 conserved hypothetical protein compare
Psyr_4161 -1.5 -2.0 Rod shape-determining protein MreD compare
Psyr_5067 -1.4 -1.6 conserved hypothetical protein compare
Psyr_1400 -1.4 -9.3 outer membrane porin compare
Psyr_3681 -1.4 -1.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_4115 -1.3 -1.9 phosphoheptose isomerase compare
Psyr_1613 -1.3 -2.5 septum site-determining protein MinC compare
Psyr_1040 -1.3 -3.4 RNA polymerase sigma factor, ECF subfamily compare
Psyr_4839 -1.3 -7.4 hypothetical protein compare
Psyr_4750 -1.3 -2.7 cell division ATP-binding protein FtsE compare
Psyr_0293 -1.3 -6.4 Polyphosphate kinase compare
Psyr_1762 -1.3 -6.7 conserved hypothetical protein compare
Psyr_5096 -1.3 -2.3 hypothetical protein compare
Psyr_5050 -1.2 -2.8 transcriptional regulator, LysR family compare
Psyr_4822 -1.2 -3.1 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_4566 -1.2 -4.6 Peptidase M23B compare
Psyr_3585 -1.2 -2.6 Sua5/YciO/YrdC/YwlC compare
Psyr_4842 -1.2 -4.6 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_1751 -1.2 -3.2 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0976 -1.1 -2.5 Malate:quinone-oxidoreductase compare
Psyr_3287 -1.1 -1.8 DNA topoisomerase I compare
Psyr_1140 -1.1 -2.1 Disulfide bond formation protein DsbB compare
Psyr_1270 -1.1 -1.9 conserved hypothetical protein compare
Psyr_3677 -1.1 -1.6 Aminotransferase, class I and II compare
Psyr_3672 -1.0 -1.9 cobalamin-5'-phosphate synthase compare
Psyr_3906 -1.0 -1.6 regulatory protein, DeoR compare
Psyr_3755 -1.0 -0.9 conserved hypothetical protein compare
Psyr_0017 -1.0 -3.3 16S rRNA m(5)C-967 methyltransferase compare
Psyr_0849 -1.0 -3.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4941 -1.0 -2.5 NUDIX hydrolase compare
Psyr_4673 -1.0 -2.1 Coenzyme PQQ synthesis D compare
Psyr_0268 -0.9 -1.6 DSBA oxidoreductase compare
Psyr_5038 -0.9 -5.2 phosphate ABC transporter ATP-binding protein, PhoT family compare
Psyr_3281 -0.9 -1.3 Glycoside hydrolase, family 3, N-terminal compare
Psyr_3678 -0.9 -2.6 adenosylcobinamide-phosphate synthase compare
Psyr_0857 -0.9 -1.3 [SSU ribosomal protein S18P]-alanine acetyltransferase compare
Psyr_3181 -0.9 -3.0 Arginyltransferase compare
Psyr_3152 -0.9 -1.7 hypothetical protein compare
Psyr_4887 -0.9 -4.4 Peptidase S41A, C-terminal protease compare
Psyr_2464 -0.9 -4.1 methionine synthase (B12-dependent) compare
Psyr_0574 -0.9 -2.2 protease FtsH subunit HflK compare
Psyr_2897 -0.9 -2.5 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0528 -0.9 -1.3 Carbamoyltransferase compare
Psyr_4093 -0.9 -2.6 glutamate N-acetyltransferase compare
Psyr_0579 -0.9 -4.5 RNAse R compare
Psyr_4774 -0.8 -1.5 Hypothetical protein compare
Psyr_1407 -0.8 -2.6 Protein of unknown function DUF28 compare
Psyr_3476 -0.8 -3.2 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_3262 -0.8 -1.6 dnaK suppressor protein, putative compare
Psyr_0549 -0.8 -1.7 Metallophosphoesterase compare
Psyr_4151 -0.8 -0.9 Phosphocarrier HPr protein compare
Psyr_4754 -0.8 -0.7 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0680 -0.8 -2.0 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_4808 -0.8 -1.4 conserved hypothetical protein compare
Psyr_1419 -0.8 -1.5 preQ(0) biosynthesis protein QueC compare
Psyr_0811 -0.8 -3.8 Integral membrane protein TerC compare
Psyr_1378 -0.8 -1.2 RecA protein compare
Psyr_4019 -0.8 -1.9 H-NS family protein MvaT compare
Psyr_5102 -0.8 -2.1 ABC transporter compare
Psyr_4125 -0.8 -0.8 Protein of unknown function DUF1043 compare
Psyr_4567 -0.8 -2.1 Protein of unknown function UPF0075 compare
Psyr_2933 -0.8 -2.5 transcriptional regulator, TetR family compare
Psyr_1069 -0.8 -3.2 molybdopterin synthase subunit MoaE compare
Psyr_0364 -0.8 -2.9 sodium/proton antiporter, NhaA family compare
Psyr_4335 -0.8 -1.7 transcriptional regulator, AsnC family compare
Psyr_4158 -0.7 -3.7 conserved hypothetical protein compare
Psyr_4902 -0.7 -1.7 Protein of unknown function DUF495 compare
Psyr_2446 -0.7 -3.3 MCP methyltransferase, CheR-type compare
Psyr_1130 -0.7 -2.5 conserved hypothetical protein compare
Psyr_4408 -0.7 -3.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0533 -0.7 -2.1 conserved hypothetical protein compare
Psyr_3922 -0.7 -3.3 conserved hypothetical protein compare
Psyr_3626 -0.7 -1.9 transcriptional regulator, MarR family compare
Psyr_2679 -0.7 -2.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1691 -0.7 -3.9 hypothetical protein compare
Psyr_4350 -0.7 -1.9 Protein of unknown function DUF218 compare
Psyr_0393 -0.7 -2.1 Protein of unknown function DUF971 compare
Psyr_1418 -0.7 -1.5 Radical SAM compare
Psyr_0524 -0.7 -1.0 Lipopolysaccharide kinase compare
Psyr_2327 -0.7 -1.6 GTP cyclohydrolase subunit MoaA compare
Psyr_4362 -0.7 -1.5 Rare lipoprotein A compare
Psyr_4138 -0.7 -1.7 Toluene tolerance compare
Psyr_2469 -0.7 -3.4 Propionyl-CoA carboxylase compare
Psyr_4178 -0.7 -2.5 tRNA pseudouridine synthase B compare
Psyr_0831 -0.7 -1.1 Two-component response regulator CbrB compare
Psyr_1594 -0.7 -2.4 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type compare
Psyr_3381 -0.7 -1.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2980 -0.7 -1.5 UDP-glucose pyrophosphorylase compare
Psyr_5131 -0.6 -1.7 16S rRNA m(7)G-527 methyltransferase compare
Psyr_3637 -0.6 -4.1 Glycosyl transferase, family 4 compare
Psyr_4415 -0.6 -2.9 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase compare
Psyr_2927 -0.6 -1.5 transcriptional regulator, TetR family compare
Psyr_0485 -0.6 -2.4 Protein of unknown function DUF179 compare
Psyr_2867 -0.6 -2.8 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_4136 -0.6 -0.8 BolA-like protein compare
Psyr_1953 -0.6 -1.0 conserved hypothetical protein compare
Psyr_0497 -0.6 -1.5 LamB/YcsF compare
Psyr_4078 -0.6 -3.9 AmpG-related permease compare
Psyr_3183 -0.6 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Psyr_2253 -0.6 -1.5 Phosphonate metabolism compare
Psyr_3146 -0.6 -1.1 general secretion pathway protein J, putative compare
Psyr_3081 -0.6 -1.4 Secretion protein HlyD compare
Psyr_0053 -0.6 -2.2 conserved hypothetical protein compare
Psyr_2256 -0.6 -1.9 ABC transporter compare
Psyr_4683 -0.6 -1.9 dethiobiotin synthase compare
Psyr_0982 -0.6 -1.3 conserved hypothetical protein compare
Psyr_1249 -0.6 -1.7 histidyl-tRNA synthetase compare
Psyr_1118 -0.6 -1.9 Aldose 1-epimerase compare
Psyr_1160 -0.6 -4.0 Uncharacterized protein conserved in bacteria-like protein compare
Psyr_0553 -0.6 -3.2 conserved hypothetical protein compare
Psyr_3290 -0.6 -1.8 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_1563 -0.6 -2.7 Ribonuclease D compare
Psyr_2221 -0.6 -0.9 sarcosine oxidase, gamma subunit compare
Psyr_5129 -0.6 -1.7 chromosome segregation DNA-binding protein compare
Psyr_2141 -0.6 -1.3 hypothetical protein compare
Psyr_4277 -0.6 -2.4 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_1402 -0.6 -1.6 SlyX compare
Psyr_2137 -0.6 -1.1 molybdopterin molybdochelatase compare
Psyr_0214 -0.6 -1.7 conserved hypothetical protein compare
Psyr_2184 -0.6 -2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_4809 -0.6 -2.4 conserved hypothetical protein compare
Psyr_4100 -0.6 -2.3 D-alanine--D-alanine ligase compare
Psyr_3932 -0.6 -0.9 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_1109 -0.6 -2.8 6-phosphogluconate dehydratase compare
Psyr_0864 -0.6 -1.3 Protein of unknown function DUF393 compare
Psyr_3900 -0.6 -2.0 conserved hypothetical protein compare
Psyr_2467 -0.5 -2.7 3-methylcrotonoyl-CoA carboxylase, alpha subunit compare
Psyr_4855 -0.5 -2.3 conserved hypothetical protein compare
Psyr_3311 -0.5 -1.4 Virulence factor MVIN-like protein compare
Psyr_2062 -0.5 -1.9 DoxD-like family protein compare
Psyr_0059 -0.5 -3.3 HemY, N-terminal:HemY, N-terminal:HemY, N-terminal compare
Psyr_0395 -0.5 -1.1 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_2887 -0.5 -0.8 Endoribonuclease L-PSP compare
Psyr_4407 -0.5 -0.8 phosphoribosylamine--glycine ligase compare
Psyr_4041 -0.5 -2.6 hypothetical protein compare
Psyr_4623 -0.5 -3.0 Aminoglycoside phosphotransferase compare
Psyr_3034 -0.5 -1.7 conserved hypothetical protein compare
Psyr_2877 -0.5 -2.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_4069 -0.5 -3.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2095 -0.5 -2.5 Conserved TM helix compare
Psyr_3795 -0.5 -1.8 hypothetical protein compare
Psyr_4658 -0.5 -1.7 CDS compare
Psyr_0347 -0.5 -1.8 hypothetical protein compare
Psyr_3662 -0.5 -1.5 NAD(P)H dehydrogenase (quinone) compare
Psyr_0278 -0.5 -2.2 ABC-3 compare
Psyr_1104 -0.5 -1.2 Heme oxygenase compare
Psyr_2833 -0.5 -1.6 CDS compare
Psyr_3583 -0.5 -2.1 condensin subunit ScpB compare
Psyr_3882 -0.5 -0.7 conserved hypothetical protein compare
Psyr_0354 -0.5 -3.2 Acyl-CoA dehydrogenase, C-terminal compare
Psyr_1528 -0.5 -1.1 Arc-like DNA binding protein compare
Psyr_0552 -0.5 -2.3 conserved hypothetical protein compare
Psyr_0435 -0.5 -1.0 membrane protein, putative compare
Psyr_5132 -0.5 -0.5 Glucose-inhibited division protein A subfamily compare
Psyr_4732 -0.5 -3.5 choline dehydrogenase compare
Psyr_0369 -0.5 -1.6 lipoprotein, putative compare
Psyr_4476 -0.5 -2.2 dTDP-4-dehydrorhamnose reductase compare
Psyr_0291 -0.5 -1.6 DedA compare
Psyr_2248 -0.5 -2.1 Phosphonate-binding periplasmic protein compare
Psyr_1811 -0.5 -1.2 transcriptional regulator, GntR family compare
Psyr_2227 -0.5 -0.6 conserved hypothetical protein compare
Psyr_0978 -0.5 -2.5 lipoprotein, putative compare
Psyr_3018 -0.5 -1.3 membrane protein, putative compare
Psyr_0983 -0.5 -2.4 Protein of unknown function DUF159 compare
Psyr_0176 -0.5 -1.0 conserved hypothetical protein compare
Psyr_1544 -0.5 -2.4 SirA-like protein compare
Psyr_4183 -0.5 -0.8 protein translocase subunit secG compare
Psyr_3611 -0.5 -1.8 Protein of unknown function DUF815 compare
Psyr_2017 -0.5 -2.4 Heat shock protein Hsp90:ATP-binding region, ATPase-like protein compare
Psyr_0112 -0.5 -2.2 hypothetical protein compare
Psyr_0475 -0.5 -1.2 Protein of unknown function YGGT compare
Psyr_0060 -0.5 -1.4 Protein of unknown function DUF513 compare
Psyr_0037 -0.5 -1.1 Protein of unknown function DUF1458 compare
Psyr_4076 -0.5 -3.0 conserved hypothetical protein compare
Psyr_2461 -0.5 -1.1 Uncharacterized conserved protein UCP030820 compare
Psyr_0920 -0.5 -3.8 Glycosyl transferase, group 1 compare
Psyr_1786 -0.5 -2.2 membrane protein, putative compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Dimethyl Sulfoxide across organisms