Experiment set18S277 for Paraburkholderia graminis OAS925

R2A with PEG 6000 16 vol%

Group: stress
Media: R2A + PEG 6000 (16 vol%)
Culturing: Burkholderia_OAS925_ML2, tube, Aerobic, at 30 (C), shaken=200 rpm
By: Shweta Priya on 12/2/23
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 8 genes in this experiment

For stress PEG 6000 in Paraburkholderia graminis OAS925

For stress PEG 6000 across organisms

SEED Subsystems

Subsystem	#Specific
DNA-replication	3
Glutathione-dependent pathway of formaldehyde detoxification	2

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Methane metabolism
• Glycolysis / Gluconeogenesis
• Fatty acid metabolism
• Glycine, serine and threonine metabolism
• Tyrosine metabolism
• 1- and 2-Methylnaphthalene degradation
• 3-Chloroacrylic acid degradation
• Retinol metabolism
• Metabolism of xenobiotics by cytochrome P450
• Drug metabolism - cytochrome P450

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
acetaldehyde biosynthesis I	1	1	1
formaldehyde oxidation II (glutathione-dependent)	3	3	2
pyruvate fermentation to ethanol II	2	1	1
ethanol degradation I	2	1	1
ethanol degradation II	3	3	1
L-valine degradation II	3	2	1
L-isoleucine degradation II	3	2	1
L-leucine degradation III	3	2	1
pyruvate fermentation to ethanol III	3	1	1
L-methionine degradation III	3	1	1
pyruvate fermentation to ethanol I	3	1	1
phytol degradation	4	3	1
L-phenylalanine degradation III	4	2	1
L-tyrosine degradation III	4	2	1
salidroside biosynthesis	4	1	1
ethanolamine utilization	5	4	1
pyruvate fermentation to isobutanol (engineered)	5	4	1
acetylene degradation (anaerobic)	5	3	1
(S)-propane-1,2-diol degradation	5	3	1
protein S-nitrosylation and denitrosylation	5	3	1
phenylethanol biosynthesis	5	1	1
superpathway of C1 compounds oxidation to CO2	12	7	2
noradrenaline and adrenaline degradation	13	4	2
3-methylbutanol biosynthesis (engineered)	7	6	1
serotonin degradation	7	3	1
butanol and isobutanol biosynthesis (engineered)	8	3	1
superpathway of fermentation (Chlamydomonas reinhardtii)	9	5	1
superpathway of Clostridium acetobutylicum solventogenic fermentation	13	6	1
L-tryptophan degradation V (side chain pathway)	13	1	1
mixed acid fermentation	16	12	1
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation	17	9	1
heterolactic fermentation	18	15	1
superpathway of anaerobic sucrose degradation	19	15	1
hexitol fermentation to lactate, formate, ethanol and acetate	19	14	1
superpathway of N-acetylneuraminate degradation	22	15	1