Experiment set18S1036 for Phocaeicola vulgatus CL09T03C04

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D-Glucose-6-Phosphate sodium salt 10 mM carbon source mhCom Varel_Bryant_medium_lowCys Passage4

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12110 -8.8 -6.1 biosynthetic arginine decarboxylase compare
HMPREF1058_RS12490 -8.6 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS14380 -8.5 -3.7 AAA family ATPase compare
HMPREF1058_RS12115 -8.4 -5.8 acetylglutamate kinase compare
HMPREF1058_RS08855 -8.2 -5.7 arginine repressor compare
HMPREF1058_RS16070 -8.2 -3.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS14565 -8.0 -5.6 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS08840 -8.0 -5.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS14730 -7.9 -5.4 threonine synthase compare
HMPREF1058_RS10075 -7.8 -5.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS00565 -7.8 -5.4 hemolysin III family protein compare
HMPREF1058_RS08555 -7.8 -5.4 hypothetical protein compare
HMPREF1058_RS09585 -7.8 -5.4 argininosuccinate lyase compare
HMPREF1058_RS08520 -7.7 -3.4 DUF59 domain-containing protein compare
HMPREF1058_RS10965 -7.7 -5.2 cation transporter compare
HMPREF1058_RS08830 -7.7 -4.8 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS08650 -7.5 -5.2 glutamate 5-kinase compare
HMPREF1058_RS09675 -7.5 -3.3 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS14725 -7.5 -5.2 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14545 -7.5 -5.2 2-isopropylmalate synthase compare
HMPREF1058_RS14610 -7.5 -5.2 adenylosuccinate synthase compare
HMPREF1058_RS13655 -7.5 -8.9 cardiolipin synthase compare
HMPREF1058_RS15885 -7.5 -5.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14920 -7.5 -5.2 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS10820 -7.5 -5.2 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS09590 -7.4 -5.1 hypothetical protein compare
HMPREF1058_RS08545 -7.4 -5.1 ATPase compare
HMPREF1058_RS08325 -7.4 -3.7 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS15075 -7.4 -5.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS08645 -7.3 -5.1 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS07200 -7.3 -5.1 tryptophan synthase subunit alpha compare
HMPREF1058_RS06820 -7.3 -5.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS11040 -7.2 -4.7 polysaccharide deacetylase family protein compare
HMPREF1058_RS08835 -7.2 -6.2 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS07185 -7.2 -5.0 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS08845 -7.1 -7.0 argininosuccinate synthase compare
HMPREF1058_RS14550 -7.1 -4.9 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS12780 -7.1 -4.9 M20 family metallo-hydrolase compare
HMPREF1058_RS16825 -7.1 -8.0 acetolactate synthase small subunit compare
HMPREF1058_RS07175 -7.0 -4.9 anthranilate synthase component I family protein compare
HMPREF1058_RS10080 -7.0 -8.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS13605 -7.0 -4.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1058_RS15870 -7.0 -4.8 ATP phosphoribosyltransferase compare
HMPREF1058_RS02485 -7.0 -4.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS02110 -7.0 -4.8 NADP-dependent malic enzyme compare
HMPREF1058_RS07170 -7.0 -4.8 tryptophan synthase subunit beta compare
HMPREF1058_RS12795 -6.9 -4.6 CYTH domain-containing protein compare
HMPREF1058_RS11270 -6.9 -4.8 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS08550 -6.9 -4.8 phosphatase PAP2 family protein compare
HMPREF1058_RS11380 -6.8 -4.0 DUF4271 domain-containing protein compare
HMPREF1058_RS02800 -6.8 -4.7 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS14720 -6.8 -10.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS17970 -6.8 -4.1 malonyl-ACP O-methyltransferase BioC compare
HMPREF1058_RS14385 -6.8 -13.0 DUF4435 domain-containing protein compare
HMPREF1058_RS02625 -6.7 -4.7 [FeFe] hydrogenase H-cluster maturation GTPase HydF compare
HMPREF1058_RS00700 -6.7 -4.7 DUF4831 family protein compare
HMPREF1058_RS17975 -6.7 -4.6 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS09745 -6.7 -4.6 glycosyltransferase compare
HMPREF1058_RS08640 -6.7 -1.7 acetylornithine carbamoyltransferase compare
HMPREF1058_RS14770 -6.7 -4.6 prephenate dehydrogenase compare
HMPREF1058_RS07190 -6.6 -3.8 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS10995 -6.6 -4.6 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS02135 -6.6 -7.8 phosphoenolpyruvate synthase compare
HMPREF1058_RS09735 -6.6 -6.4 hypothetical protein compare
HMPREF1058_RS00600 -6.5 -6.4 diaminopimelate dehydrogenase compare
HMPREF1058_RS15875 -6.5 -4.5 histidinol dehydrogenase compare
HMPREF1058_RS09545 -6.5 -16.9 magnesium transporter CorA family protein compare
HMPREF1058_RS03265 -6.5 -4.5 2-iminoacetate synthase ThiH compare
HMPREF1058_RS14560 -6.4 -9.9 2-isopropylmalate synthase compare
HMPREF1058_RS10270 -6.4 -2.9 hypothetical protein compare
HMPREF1058_RS06170 -6.4 -3.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS03000 -6.3 -4.4 IMP dehydrogenase compare
HMPREF1058_RS02610 -6.3 -7.5 4Fe-4S dicluster domain-containing protein compare
HMPREF1058_RS08025 -6.3 -4.4 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS14795 -6.3 -4.3 prephenate dehydratase compare
HMPREF1058_RS16815 -6.3 -4.3 dihydroxy-acid dehydratase compare
HMPREF1058_RS09180 -6.3 -5.1 hypothetical protein compare
HMPREF1058_RS07195 -6.3 -2.8 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS15880 -6.3 -4.3 histidinol-phosphate transaminase compare
HMPREF1058_RS00525 -6.2 -3.0 DUF4290 domain-containing protein compare
HMPREF1058_RS01925 -6.2 -1.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS06165 -6.2 -4.3 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS14790 -6.2 -4.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS17955 -6.2 -4.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS15435 -6.2 -4.3 hypothetical protein compare
HMPREF1058_RS03285 -6.2 -4.3 thiazole synthase compare
HMPREF1058_RS07090 -6.2 -1.9 hypothetical protein compare
HMPREF1058_RS08065 -6.2 -4.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS10055 -6.2 -18.2 translational GTPase TypA compare
HMPREF1058_RS16620 -6.1 -4.3 GGGtGRT protein compare
HMPREF1058_RS17940 -6.1 -4.2 alpha-amylase compare
HMPREF1058_RS17935 -6.1 -4.2 glycosyltransferase compare
HMPREF1058_RS03310 -6.1 -4.2 carboxynorspermidine decarboxylase compare
HMPREF1058_RS01650 -6.1 -3.7 hypothetical protein compare
HMPREF1058_RS03280 -6.1 -4.2 phosphomethylpyrimidine synthase ThiC compare
HMPREF1058_RS16835 -6.1 -4.2 ketol-acid reductoisomerase compare
HMPREF1058_RS16820 -6.0 -4.2 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS04375 -6.0 -4.1 carbon-nitrogen hydrolase compare
HMPREF1058_RS07955 -6.0 -4.1 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS15565 -6.0 -15.5 hypothetical protein compare
HMPREF1058_RS06160 -6.0 -4.1 formyltetrahydrofolate deformylase compare
HMPREF1058_RS03800 -6.0 -4.1 serine hydroxymethyltransferase compare
HMPREF1058_RS17960 -6.0 -4.1 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS11535 -5.9 -5.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS17885 -5.9 -4.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS02495 -5.9 -4.0 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS06055 -5.9 -5.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS09610 -5.8 -4.0 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS06175 -5.8 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS10955 -5.8 -4.0 phosphatase PAP2 family protein compare
HMPREF1058_RS09185 -5.8 -3.2 DUF4252 domain-containing protein compare
HMPREF1058_RS06835 -5.8 -7.9 alpha-amylase family protein compare
HMPREF1058_RS06180 -5.8 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS02975 -5.7 -1.5 hypothetical protein compare
HMPREF1058_RS12105 -5.7 -2.7 shikimate kinase compare
HMPREF1058_RS14490 -5.7 -5.5 S9 family peptidase compare
HMPREF1058_RS07180 -5.6 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS01215 -5.6 -3.9 tRNA guanosine(34) transglycosylase Tgt compare
HMPREF1058_RS02115 -5.6 -10.6 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS02620 -5.6 -9.4 [FeFe] hydrogenase H-cluster radical SAM maturase HydG compare
HMPREF1058_RS13795 -5.6 -3.9 DUF4954 family protein compare
HMPREF1058_RS15975 -5.6 -3.9 saccharopine dehydrogenase family protein compare
HMPREF1058_RS02480 -5.6 -3.2 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS06320 -5.5 -3.8 electron transport complex subunit RsxA compare
HMPREF1058_RS03910 -5.5 -3.8 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS08850 -5.5 -6.7 N-acetyltransferase compare
HMPREF1058_RS16760 -5.5 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS03205 -5.5 -6.5 glycogen/starch synthase compare
HMPREF1058_RS10720 -5.4 -3.8 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS10840 -5.4 -2.0 hypothetical protein compare
HMPREF1058_RS11910 -5.4 -3.7 DEAD/DEAH box helicase compare
HMPREF1058_RS18235 -5.4 -2.8 3'-5' exonuclease compare
HMPREF1058_RS16625 -5.4 -4.8 hypothetical protein compare
HMPREF1058_RS10985 -5.4 -8.2 RNA methyltransferase compare
HMPREF1058_RS00595 -5.4 -2.8 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS14220 -5.4 -3.1 energy transducer TonB compare
HMPREF1058_RS13350 -5.3 -3.7 Trk system potassium transporter TrkA compare
HMPREF1058_RS17075 -5.3 -6.3 inositol-3-phosphate synthase compare
HMPREF1058_RS12070 -5.3 -3.0 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS11730 -5.2 -1.7 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS06345 -5.2 -4.5 Fe-S cluster domain-containing protein compare
HMPREF1058_RS10940 -5.2 -16.5 U32 family peptidase compare
HMPREF1058_RS05755 -5.2 -8.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS09750 -5.1 -3.6 glycosyltransferase compare
HMPREF1058_RS01640 -5.1 -3.5 BamA/TamA family outer membrane protein compare
HMPREF1058_RS17035 -5.1 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS07655 -5.1 -1.3 hypothetical protein compare
HMPREF1058_RS00590 -5.1 -2.9 hypothetical protein compare
HMPREF1058_RS17050 -5.1 -3.5 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS09730 -5.1 -12.5 LicD family protein compare
HMPREF1058_RS07960 -5.1 -22.4 response regulator compare
HMPREF1058_RS01210 -5.0 -6.9 endopeptidase La compare
HMPREF1058_RS14285 -5.0 -1.2 DUF5056 domain-containing protein compare
HMPREF1058_RS15915 -5.0 -2.7 OmpH family outer membrane protein compare
HMPREF1058_RS0119830 -5.0 -0.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS17920 -5.0 -2.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
HMPREF1058_RS15520 -5.0 -2.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS01460 -4.9 -1.8 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS14020 -4.9 -9.4 cardiolipin synthase compare
HMPREF1058_RS14785 -4.9 -3.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS02165 -4.9 -10.4 malate dehydrogenase compare
HMPREF1058_RS04130 -4.9 -1.5 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS17815 -4.9 -3.4 MFS transporter compare
HMPREF1058_RS02170 -4.9 -3.4 hypothetical protein compare
HMPREF1058_RS05780 -4.9 -3.4 PD40 domain-containing protein compare
HMPREF1058_RS09680 -4.9 -2.8 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS17060 -4.8 -3.3 HAD family hydrolase compare
HMPREF1058_RS06195 -4.8 -3.3 diaminopimelate decarboxylase compare
HMPREF1058_RS04365 -4.8 -3.3 translocation/assembly module TamB compare
HMPREF1058_RS02615 -4.8 -4.9 [FeFe] hydrogenase H-cluster radical SAM maturase HydE compare
HMPREF1058_RS07245 -4.7 -2.2 Rne/Rng family ribonuclease compare
HMPREF1058_RS07575 -4.7 -4.4 MCE family protein compare
HMPREF1058_RS06335 -4.7 -3.2 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS09685 -4.7 -13.2 tetratricopeptide repeat protein compare
HMPREF1058_RS12345 -4.7 -15.1 4-alpha-glucanotransferase compare
HMPREF1058_RS03260 -4.7 -6.4 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS10835 -4.7 -4.5 UDP-galactopyranose mutase compare
HMPREF1058_RS06325 -4.7 -2.5 electron transport complex subunit E compare
HMPREF1058_RS11925 -4.6 -1.7 DUF2975 domain-containing protein compare
HMPREF1058_RS17950 -4.6 -3.2 biotin synthase BioB compare
HMPREF1058_RS03290 -4.6 -2.1 thiamine phosphate synthase compare
HMPREF1058_RS04300 -4.6 -3.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS14215 -4.6 -2.5 (d)CMP kinase compare
HMPREF1058_RS06080 -4.6 -3.2 glutamine synthetase III compare
HMPREF1058_RS06340 -4.6 -3.1 electron transport complex subunit RsxC compare
HMPREF1058_RS14835 -4.5 -3.1 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS08295 -4.5 -3.1 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS06225 -4.5 -2.5 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS17045 -4.5 -3.2 hypothetical protein compare
HMPREF1058_RS10255 -4.5 -2.0 hypothetical protein compare
HMPREF1058_RS13910 -4.5 -4.4 nucleoside deaminase compare
HMPREF1058_RS06430 -4.5 -2.5 C-GCAxxG-C-C family protein compare
HMPREF1058_RS04065 -4.5 -1.4 VWA domain-containing protein compare
HMPREF1058_RS01665 -4.5 -3.7 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS11490 -4.5 -2.9 redox-regulated ATPase YchF compare
HMPREF1058_RS02910 -4.4 -16.0 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS02280 -4.4 -17.5 carboxypeptidase regulatory-like domain-containing protein compare
HMPREF1058_RS05765 -4.4 -12.4 nucleoside phosphorylase compare
HMPREF1058_RS13635 -4.4 -2.7 gliding motility lipoprotein GldH compare
HMPREF1058_RS04295 -4.4 -3.0 3-phosphoglycerate dehydrogenase compare


Specific Phenotypes

For 17 genes in this experiment

For mixed community D-Glucose-6-Phosphate sodium salt in Phocaeicola vulgatus CL09T03C04

For mixed community D-Glucose-6-Phosphate sodium salt across organisms