Experiment set18IT084 for Pseudomonas stutzeri RCH2

Compare to:

Ionizing radiation, 319.06 Gy, replicate 2

200 most important genes:

  gene name fitness t score description  
Psest_1679 -3.3 -2.4 ribonuclease, Rne/Rng family compare
Psest_0536 -3.1 -3.7 thiamine-phosphate pyrophosphorylase compare
Psest_3031 -2.8 -0.8 hypothetical protein compare
Psest_2333 -2.7 -0.7 Protein of unknown function (DUF3359). compare
Psest_3816 -2.6 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_0267 -2.6 -6.5 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0266 -2.3 -4.6 thiamine biosynthesis protein ThiS compare
Psest_4142 -2.3 -2.0 hypothetical protein compare
Psest_3576 -2.1 -14.0 excinuclease ABC, A subunit conserved
Psest_3377 -2.1 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2101 -2.1 -1.5 hypothetical protein compare
Psest_0355 -2.1 -2.3 Glycine cleavage system regulatory protein compare
Psest_2566 -2.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1518 -1.9 -2.5 tRNA_Ser_CGA compare
Psest_2545 -1.9 -2.7 recombination protein RecR compare
Psest_1167 -1.8 -1.0 hypothetical protein compare
Psest_2259 -1.8 -9.7 excinuclease ABC, C subunit conserved
Psest_3659 -1.8 -3.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0004 -1.8 -8.8 recF protein compare
Psest_0969 -1.7 -1.7 transcription elongation factor GreA compare
Psest_1860 -1.7 -3.4 Uncharacterized conserved protein compare
Psest_3178 -1.7 -2.9 formyltetrahydrofolate deformylase compare
Psest_3090 -1.6 -4.5 DNA repair protein RecO compare
Psest_1700 -1.6 -3.2 Transcriptional regulator compare
Psest_3860 -1.6 -2.3 Predicted permeases compare
Psest_0367 -1.6 -2.1 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0259 -1.6 -0.8 cell division ATP-binding protein FtsE compare
Psest_0998 -1.5 -2.0 poly(A) polymerase compare
Psest_4343 -1.5 -2.3 Protein of unknown function (DUF3301). compare
Psest_1296 -1.5 -5.3 excinuclease ABC, B subunit conserved
Psest_2067 -1.5 -0.8 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0260 -1.5 -1.1 Cell division protein compare
Psest_4177 -1.4 -1.8 flagellar biosynthetic protein FliP compare
Psest_1008 -1.4 -1.0 hypothetical protein compare
Psest_4310 -1.4 -2.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1230 -1.4 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3456 -1.4 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_0277 -1.4 -1.7 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0094 -1.4 -2.4 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1824 -1.4 -1.3 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1643 -1.4 -0.9 hypothetical protein compare
Psest_4406 -1.4 -1.7 hypothetical protein compare
Psest_2308 -1.3 -1.0 Predicted Fe-S protein compare
Psest_1506 -1.3 -3.7 queuosine biosynthesis protein QueC compare
Psest_1466 -1.3 -2.1 transcriptional regulator, Spx/MgsR family compare
Psest_1837 -1.3 -3.7 Endoglucanase compare
Psest_0378 -1.3 -3.1 Lactate dehydrogenase and related dehydrogenases compare
Psest_2470 -1.3 -2.0 hypothetical protein compare
Psest_0060 -1.3 -2.1 Predicted Fe-S protein compare
Psest_0309 -1.3 -0.8 RND family efflux transporter, MFP subunit compare
Psest_1505 -1.3 -1.1 Organic radical activating enzymes compare
Psest_0114 -1.3 -1.6 RNA polymerase sigma factor, sigma-70 family compare
Psest_3168 -1.3 -2.3 Molybdopterin converting factor, large subunit compare
Psest_4103 -1.2 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_3828 -1.2 -1.5 zinc-binding alcohol dehydrogenase family protein compare
Psest_0716 -1.2 -0.9 Protein of unknown function (DUF3094). compare
Psest_2892 -1.2 -2.9 Transcriptional regulator compare
Psest_2955 -1.2 -3.5 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_1115 -1.2 -0.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3191 -1.2 -2.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_3648 -1.1 -3.2 anthranilate phosphoribosyltransferase compare
Psest_1111 -1.1 -2.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1496 -1.1 -0.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_3518 -1.1 -1.0 Transcriptional regulators compare
Psest_1772 -1.1 -2.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4307 -1.1 -1.8 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_1302 -1.1 -3.5 Predicted thioesterase compare
Psest_2023 -1.1 -2.1 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2945 -1.1 -1.2 septum site-determining protein MinC compare
Psest_0485 -1.1 -2.8 clan AA aspartic protease, TIGR02281 family compare
Psest_1451 -1.1 -1.6 Uncharacterized ABC-type transport system, permease components compare
Psest_1657 -1.1 -0.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4309 -1.1 -2.8 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_4315 -1.1 -1.8 ABC-type metal ion transport system, permease component compare
Psest_3881 -1.1 -1.1 hypothetical protein compare
Psest_3174 -1.0 -6.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2458 -1.0 -1.7 MoxR-like ATPases compare
Psest_2953 -1.0 -1.2 Histone acetyltransferase compare
Psest_3896 -1.0 -1.9 arsenite-activated ATPase ArsA compare
Psest_1031 -1.0 -4.7 Uncharacterized protein conserved in bacteria compare
Psest_3014 -1.0 -1.2 cob(I)alamin adenosyltransferase compare
Psest_4124 -1.0 -1.8 hypothetical protein compare
Psest_1681 -1.0 -2.4 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_3494 -1.0 -2.0 hypothetical protein compare
Psest_3401 -1.0 -3.9 DNA repair protein RadA compare
Psest_1980 -1.0 -1.7 Uncharacterized conserved protein compare
Psest_0533 -1.0 -2.8 Sel1 repeat. compare
Psest_1139 -1.0 -3.0 PAS domain S-box compare
Psest_3176 -1.0 -4.0 Predicted ATPase compare
Psest_3927 -1.0 -2.6 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1600 -1.0 -1.2 hypothetical protein compare
Psest_2126 -1.0 -3.5 Transcriptional regulators compare
Psest_1826 -0.9 -2.6 hypothetical protein compare
Psest_0537 -0.9 -0.7 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_4126 -0.9 -1.2 Predicted peroxiredoxins compare
Psest_3039 -0.9 -1.0 periplasmic nitrate reductase, NapE protein compare
Psest_1132 -0.9 -2.0 mutator mutT protein compare
Psest_1762 -0.9 -0.8 cytochrome c-type biogenesis protein CcmI compare
Psest_3913 -0.9 -1.8 hypothetical protein compare
Psest_1978 -0.9 -4.9 DNA-directed DNA polymerase III (polc) compare
Psest_2810 -0.9 -3.1 5'/3'-nucleotidase SurE compare
Psest_1525 -0.9 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_2766 -0.9 -0.7 hypothetical protein compare
Psest_1511 -0.9 -2.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0376 -0.9 -2.0 glucarate dehydratase compare
Psest_0846 -0.9 -1.6 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1370 -0.9 -2.4 hypothetical protein compare
Psest_2733 -0.9 -2.8 Uncharacterized protein conserved in bacteria (DUF2188). compare
Psest_2850 -0.8 -0.7 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2718 -0.8 -0.7 hypothetical protein compare
Psest_2485 -0.8 -2.7 hypothetical protein compare
Psest_1794 -0.8 -2.3 Flagellar motor protein compare
Psest_0782 -0.8 -1.8 Transcriptional regulator of aromatic amino acids metabolism compare
Psest_2349 -0.8 -2.9 urea carboxylase-associated protein 1 compare
Psest_0872 -0.8 -0.7 Helix-turn-helix. compare
Psest_3146 -0.8 -0.9 hypothetical protein compare
Psest_1125 -0.8 -2.6 Protein of unknown function (DUF3509). compare
Psest_3181 -0.8 -2.6 Predicted membrane protein/domain compare
Psest_3899 -0.8 -3.3 Predicted phosphoribosyltransferases compare
Psest_0691 -0.8 -4.8 ribonuclease R compare
Psest_2793 -0.8 -1.4 hypothetical protein compare
Psest_1871 -0.8 -3.1 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_2177 -0.8 -1.5 Protein of unknown function (DUF1652). compare
Psest_1660 -0.8 -0.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_4045 -0.8 -2.7 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Psest_1870 -0.8 -0.8 Transcriptional regulators compare
Psest_2229 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3839 -0.8 -3.0 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_0822 -0.8 -1.6 Transcriptional regulators compare
Psest_4286 -0.8 -4.3 Glutamine synthetase compare
Psest_2280 -0.8 -2.3 Predicted membrane protein compare
Psest_0082 -0.8 -1.4 Domain of unknown function (DUF892). compare
Psest_4265 -0.8 -3.9 dTDP-4-dehydrorhamnose reductase compare
Psest_3449 -0.8 -1.6 DJ-1 family protein compare
Psest_1163 -0.8 -2.5 diguanylate cyclase (GGDEF) domain compare
Psest_0725 -0.8 -0.5 Negative regulator of beta-lactamase expression compare
Psest_4062 -0.8 -4.3 sulfate ABC transporter, permease protein CysW compare
Psest_1960 -0.8 -2.1 Bacterial protein of unknown function (DUF903). compare
Psest_4364 -0.8 -2.0 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_3535 -0.8 -1.2 hypothetical protein compare
Psest_1945 -0.8 -1.8 hypothetical protein compare
Psest_1610 -0.8 -2.1 hypothetical protein compare
Psest_1979 -0.8 -1.6 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_1185 -0.8 -1.6 heavy metal response regulator compare
Psest_4196 -0.7 -2.3 Type II secretory pathway, component PulK compare
Psest_1012 -0.7 -1.8 Signal transduction histidine kinase compare
Psest_0844 -0.7 -2.1 High-affinity Fe2+/Pb2+ permease compare
Psest_2268 -0.7 -1.5 Alcohol dehydrogenase, class IV compare
Psest_3922 -0.7 -1.5 Response regulator of citrate/malate metabolism compare
Psest_2266 -0.7 -1.5 hypothetical protein compare
Psest_3958 -0.7 -2.1 Predicted Fe-S-cluster oxidoreductase compare
Psest_1597 -0.7 -1.4 Protein of unknown function (DUF2933). compare
Psest_2992 -0.7 -2.1 Uncharacterized conserved protein compare
Psest_3183 -0.7 -2.7 hypothetical protein compare
Psest_1920 -0.7 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_2590 -0.7 -0.5 3-isopropylmalate dehydratase, small subunit compare
Psest_0795 -0.7 -1.5 ABC-type multidrug transport system, ATPase component compare
Psest_3904 -0.7 -1.1 hypothetical protein compare
Psest_0364 -0.7 -2.5 Gluconolactonase compare
Psest_2584 -0.7 -1.6 Phosphoribosylanthranilate isomerase compare
Psest_0281 -0.7 -3.0 Dynamin family. compare
Psest_1489 -0.7 -1.4 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_2419 -0.7 -2.1 AraC-type DNA-binding domain-containing proteins compare
Psest_4363 -0.7 -3.0 ATPases involved in chromosome partitioning compare
Psest_0243 -0.7 -0.8 hypothetical protein compare
Psest_2480 -0.7 -2.3 Methyl-accepting chemotaxis protein compare
Psest_2779 -0.7 -1.7 Methyl-accepting chemotaxis protein compare
Psest_1049 -0.7 -2.2 Uncharacterized paraquat-inducible protein A compare
Psest_0054 -0.7 -2.0 hypothetical protein compare
Psest_3649 -0.7 -3.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0312 -0.7 -2.8 Superfamily II DNA and RNA helicases compare
Psest_3231 -0.7 -1.1 hypothetical protein compare
Psest_0240 -0.7 -1.9 hypothetical protein compare
Psest_1732 -0.7 -1.6 flagellar biosynthetic protein FliP compare
Psest_1183 -0.7 -1.9 hydroxyisourate hydrolase compare
Psest_1207 -0.7 -2.5 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
Psest_3482 -0.7 -2.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1653 -0.7 -4.5 transcription-repair coupling factor (mfd) compare
Psest_3522 -0.7 -2.1 3-hydroxybutyrate dehydrogenase compare
Psest_0857 -0.7 -1.0 Membrane transporters of cations and cationic drugs compare
Psest_4158 -0.7 -1.5 Flagellar motor protein compare
Psest_2078 -0.7 -2.5 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding compare
Psest_1718 -0.7 -1.8 flagellar hook-basal body complex protein FliE compare
Psest_0408 -0.7 -2.1 Protein involved in catabolism of external DNA compare
Psest_1479 -0.7 -1.3 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_2880 -0.7 -2.9 Glycosyltransferase compare
Psest_2358 -0.7 -0.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0573 -0.7 -2.7 cation diffusion facilitator family transporter compare
Psest_2248 -0.7 -1.1 Predicted transcriptional regulators compare
Psest_1939 -0.7 -2.9 Tetratricopeptide repeat. compare
Psest_1357 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3537 -0.7 -2.3 hypothetical protein compare
Psest_2894 -0.7 -1.8 addiction module antidote protein, HigA family compare
Psest_4345 -0.7 -3.5 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3455 -0.6 -1.3 Dihaem cytochrome c. compare
Psest_1006 -0.6 -2.3 dTDP-4-dehydrorhamnose reductase compare
Psest_4280 -0.6 -1.6 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_4135 -0.6 -2.4 Ketosteroid isomerase homolog compare
Psest_1512 -0.6 -2.9 Predicted permease compare
Psest_0558 -0.6 -0.5 urease, beta subunit compare


Specific Phenotypes

For 7 genes in this experiment

For radiation Ionizing radiation in Pseudomonas stutzeri RCH2

For radiation Ionizing radiation across organisms