Experiment set18IT083 for Pseudomonas stutzeri RCH2

Compare to:

Ionizing radiation, 319.06 Gy, replicate 1

200 most important genes:

  gene name fitness t score description  
Psest_3456 -3.0 -2.0 RNA polymerase sigma factor, sigma-70 family compare
Psest_0536 -2.7 -5.2 thiamine-phosphate pyrophosphorylase compare
Psest_0266 -2.6 -3.1 thiamine biosynthesis protein ThiS compare
Psest_4298 -2.4 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1679 -2.3 -2.4 ribonuclease, Rne/Rng family compare
Psest_2566 -2.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0267 -2.3 -6.2 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_3576 -2.3 -13.8 excinuclease ABC, A subunit conserved
Psest_2259 -2.2 -11.7 excinuclease ABC, C subunit conserved
Psest_3090 -2.1 -8.4 DNA repair protein RecO compare
Psest_2590 -2.1 -1.0 3-isopropylmalate dehydratase, small subunit compare
Psest_2446 -2.1 -2.4 acetyl-CoA acetyltransferases compare
Psest_1115 -2.1 -1.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3151 -2.0 -2.9 hypothetical protein compare
Psest_3937 -1.9 -1.9 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1037 -1.9 -2.4 acetolactate synthase, small subunit compare
Psest_3816 -1.9 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_0004 -1.9 -7.6 recF protein compare
Psest_4201 -1.9 -2.5 general secretion pathway protein F compare
Psest_0790 -1.8 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_3496 -1.8 -1.6 Predicted metal-binding protein compare
Psest_3850 -1.8 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2899 -1.8 -1.3 hypothetical protein compare
Psest_1296 -1.7 -7.2 excinuclease ABC, B subunit conserved
Psest_2584 -1.7 -3.4 Phosphoribosylanthranilate isomerase compare
Psest_4134 -1.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1888 -1.7 -1.1 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1505 -1.7 -1.0 Organic radical activating enzymes compare
Psest_0277 -1.6 -1.1 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0066 -1.5 -1.6 Protein of unknown function (DUF3060). compare
Psest_3377 -1.5 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4142 -1.5 -0.9 hypothetical protein compare
Psest_1870 -1.5 -1.2 Transcriptional regulators compare
Psest_4126 -1.4 -2.2 Predicted peroxiredoxins compare
Psest_2088 -1.4 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2975 -1.4 -1.2 tRNA_Arg_CCT compare
Psest_1489 -1.3 -1.5 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_2545 -1.3 -1.7 recombination protein RecR compare
Psest_3148 -1.3 -1.2 hypothetical protein compare
Psest_1506 -1.3 -3.1 queuosine biosynthesis protein QueC compare
Psest_3231 -1.3 -2.0 hypothetical protein compare
Psest_1056 -1.3 -1.6 2-isopropylmalate synthase, bacterial type compare
Psest_1532 -1.3 -1.6 DNA recombination-dependent growth factor C compare
Psest_2887 -1.3 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2911 -1.2 -1.6 Protein of unknown function (DUF2945). compare
Psest_3735 -1.2 -1.6 uncharacterized domain 1 compare
Psest_3146 -1.2 -1.4 hypothetical protein compare
Psest_3005 -1.2 -1.9 Fructose-2,6-bisphosphatase compare
Psest_3401 -1.2 -4.8 DNA repair protein RadA compare
Psest_3857 -1.2 -2.6 ATPases involved in chromosome partitioning compare
Psest_3998 -1.2 -3.8 glutamate--cysteine ligase compare
Psest_0991 -1.2 -4.2 Predicted SAM-dependent methyltransferases compare
Psest_2907 -1.2 -0.6 Protein of unknown function (DUF3618). compare
Psest_3884 -1.2 -0.5 Signal transduction histidine kinase compare
Psest_4310 -1.2 -1.4 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2308 -1.2 -0.8 Predicted Fe-S protein compare
Psest_1241 -1.1 -3.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1511 -1.1 -2.5 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1999 -1.1 -0.7 pseudouridine synthase compare
Psest_0759 -1.1 -0.7 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1681 -1.1 -2.4 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_0212 -1.1 -1.4 exodeoxyribonuclease V, gamma subunit compare
Psest_4095 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3145 -1.1 -0.9 hypothetical protein compare
Psest_0316 -1.1 -2.0 Cytochrome c556 compare
Psest_0243 -1.1 -0.9 hypothetical protein compare
Psest_2344 -1.1 -2.0 Methyl-accepting chemotaxis protein compare
Psest_0409 -1.0 -2.4 Putative homoserine kinase type II (protein kinase fold) compare
Psest_1206 -1.0 -2.3 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1619 -1.0 -2.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_0547 -1.0 -1.7 Urease accessory protein UreF compare
Psest_4220 -1.0 -1.8 Protein of unknown function (DUF2782). compare
Psest_2612 -1.0 -2.3 hypothetical protein compare
Psest_3437 -1.0 -2.7 diguanylate cyclase (GGDEF) domain compare
Psest_2716 -1.0 -1.5 ABC-type multidrug transport system, ATPase component compare
Psest_0837 -1.0 -1.6 Putative lipid carrier protein compare
Psest_3048 -1.0 -1.6 hypothetical protein compare
Psest_1496 -1.0 -0.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_0537 -1.0 -0.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2110 -1.0 -2.1 hypothetical protein compare
Psest_2756 -1.0 -0.9 hypothetical protein compare
Psest_2183 -1.0 -2.3 Transcriptional regulator compare
Psest_1486 -1.0 -1.6 hypothetical protein compare
Psest_1665 -1.0 -2.3 hypothetical protein compare
Psest_4243 -1.0 -1.6 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2130 -1.0 -1.6 exodeoxyribonuclease III compare
Psest_2873 -1.0 -1.8 competence/damage-inducible protein CinA C-terminal domain compare
Psest_1868 -1.0 -2.6 yecA family protein compare
Psest_2092 -1.0 -2.1 hypothetical protein compare
Psest_2520 -1.0 -0.7 Predicted SAM-dependent methyltransferase compare
Psest_1012 -1.0 -1.6 Signal transduction histidine kinase compare
Psest_0054 -0.9 -2.2 hypothetical protein compare
Psest_0520 -0.9 -0.5 hypothetical protein compare
Psest_1901 -0.9 -3.1 hypothetical protein compare
Psest_0503 -0.9 -0.9 Acyl dehydratase compare
Psest_0744 -0.9 -0.7 Uncharacterized conserved protein compare
Psest_0823 -0.9 -2.4 Transcriptional regulators compare
Psest_2394 -0.9 -3.1 TIGR01777 family protein compare
Psest_2581 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3174 -0.9 -5.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3554 -0.9 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3183 -0.9 -3.0 hypothetical protein compare
Psest_0498 -0.9 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_2955 -0.9 -1.4 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_1909 -0.9 -2.0 Phosphohistidine phosphatase SixA compare
Psest_2647 -0.9 -1.4 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_3910 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2718 -0.9 -0.8 hypothetical protein compare
Psest_4021 -0.9 -2.5 hypothetical protein compare
Psest_3139 -0.9 -2.3 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_1979 -0.9 -1.5 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_3895 -0.9 -1.9 hypothetical protein compare
Psest_1653 -0.9 -5.4 transcription-repair coupling factor (mfd) compare
Psest_1595 -0.8 -0.7 Copper chaperone compare
Psest_1774 -0.8 -1.1 Glutathione peroxidase compare
Psest_4158 -0.8 -1.8 Flagellar motor protein compare
Psest_1980 -0.8 -2.4 Uncharacterized conserved protein compare
Psest_0168 -0.8 -2.8 Uncharacterized conserved protein compare
Psest_1451 -0.8 -1.7 Uncharacterized ABC-type transport system, permease components compare
Psest_1504 -0.8 -2.3 tol-pal system protein YbgF compare
Psest_1954 -0.8 -1.3 hypothetical protein compare
Psest_0294 -0.8 -2.5 Putative transcriptional regulator compare
Psest_4270 -0.8 -3.2 TRAP transporter, DctM subunit compare
Psest_4061 -0.8 -2.4 sulfate ABC transporter, permease protein CysT compare
Psest_2348 -0.8 -1.4 urea carboxylase-associated protein 2 compare
Psest_3855 -0.8 -3.0 Branched-chain amino acid ABC-type transport system, permease components compare
Psest_4265 -0.8 -3.3 dTDP-4-dehydrorhamnose reductase compare
Psest_1457 -0.8 -1.0 FOG: Ankyrin repeat compare
Psest_1632 -0.8 -1.2 Predicted permeases compare
Psest_0148 -0.8 -2.1 nitrate transport ATP-binding subunits C and D compare
Psest_3080 -0.8 -0.9 AraC-type DNA-binding domain-containing proteins compare
Psest_1520 -0.8 -1.5 hypothetical protein compare
Psest_1791 -0.8 -1.7 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_3202 -0.8 -2.5 Flavodoxins compare
Psest_3812 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3014 -0.8 -1.1 cob(I)alamin adenosyltransferase compare
Psest_4128 -0.8 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4363 -0.8 -2.9 ATPases involved in chromosome partitioning compare
Psest_4406 -0.8 -1.1 hypothetical protein compare
Psest_2762 -0.8 -1.5 hypothetical protein compare
Psest_2724 -0.8 -1.2 hypothetical protein compare
Psest_3860 -0.8 -1.4 Predicted permeases compare
Psest_3044 -0.7 -2.2 deoxycytidine triphosphate deaminase compare
Psest_2872 -0.7 -0.5 protein RecA compare
Psest_1271 -0.7 -2.2 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Psest_1462 -0.7 -1.8 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_1235 -0.7 -3.3 Leucyl aminopeptidase compare
Psest_2173 -0.7 -1.9 competence/damage-inducible protein CinA C-terminal domain compare
Psest_3538 -0.7 -2.8 hypothetical protein compare
Psest_1597 -0.7 -1.5 Protein of unknown function (DUF2933). compare
Psest_3186 -0.7 -3.0 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_3226 -0.7 -0.5 Predicted membrane protein compare
Psest_0601 -0.7 -1.0 hypothetical protein compare
Psest_2150 -0.7 -1.1 DNA polymerase LigD, polymerase domain compare
Psest_3242 -0.7 -2.2 hypothetical protein compare
Psest_4197 -0.7 -1.6 general secretion pathway protein J compare
Psest_3766 -0.7 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3519 -0.7 -1.1 Uncharacterized conserved protein compare
Psest_1736 -0.7 -1.5 Cu/Zn superoxide dismutase compare
Psest_0839 -0.7 -3.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0962 -0.7 -2.7 DNA repair protein RecN compare
Psest_0534 -0.7 -1.9 hypothetical protein compare
Psest_0867 -0.7 -0.6 hypothetical protein compare
Psest_4231 -0.7 -2.3 Predicted alpha/beta hydrolase compare
Psest_1904 -0.7 -1.9 Arabinose efflux permease compare
Psest_2046 -0.7 -1.8 hypothetical protein compare
Psest_1360 -0.7 -1.6 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2790 -0.7 -3.8 deoxyguanosinetriphosphate triphosphohydrolase, putative compare
Psest_2480 -0.7 -1.6 Methyl-accepting chemotaxis protein compare
Psest_1773 -0.7 -1.6 methionine-R-sulfoxide reductase compare
Psest_1816 -0.7 -2.4 hypothetical protein compare
Psest_3896 -0.7 -1.6 arsenite-activated ATPase ArsA compare
Psest_3742 -0.7 -2.4 hypothetical protein compare
Psest_4052 -0.7 -1.4 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0684 -0.7 -1.6 GTP-binding protein HflX compare
Psest_1692 -0.7 -3.2 conserved hypothetical protein, YceG family compare
Psest_3927 -0.7 -1.8 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2225 -0.7 -1.0 Diacylglycerol kinase compare
Psest_3646 -0.7 -2.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0743 -0.7 -2.4 adenosine deaminase compare
Psest_3977 -0.6 -3.0 Cold shock proteins compare
Psest_0953 -0.6 -2.8 iron-sulfur cluster-binding protein compare
Psest_0482 -0.6 -2.0 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_0846 -0.6 -1.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2983 -0.6 -1.0 hypothetical protein compare
Psest_3732 -0.6 -2.3 polyphosphate kinase 1 compare
Psest_2020 -0.6 -1.4 Uncharacterized protein involved in purine metabolism compare
Psest_1315 -0.6 -0.9 hypothetical protein compare
Psest_3908 -0.6 -0.7 Cytochrome c553 compare
Psest_0678 -0.6 -1.5 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_0141 -0.6 -1.6 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3063 -0.6 -1.7 hypothetical protein compare
Psest_3447 -0.6 -0.6 Uncharacterized MobA-related protein compare
Psest_2525 -0.6 -1.5 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_3197 -0.6 -1.2 hypothetical protein compare
Psest_0771 -0.6 -3.4 Acyl-CoA hydrolase compare
Psest_0218 -0.6 -1.2 Acyl-CoA hydrolase compare
Psest_4195 -0.6 -2.7 general secretion pathway protein L compare
Psest_2991 -0.6 -2.2 hypothetical protein compare
Psest_3462 -0.6 -1.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare


Specific Phenotypes

For 9 genes in this experiment

For radiation Ionizing radiation in Pseudomonas stutzeri RCH2

For radiation Ionizing radiation across organisms