Experiment set18IT081 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc02766 -6.7 -9.2 tryptophan synthase subunit beta compare
SMc00236 -6.2 -4.3 Indole-3-glycerol phosphate synthase compare
SMc00235 -6.2 -4.3 anthranilate phosphoribosyltransferase compare
SMc02725 -6.0 -9.2 anthranilate synthase compare
SMc02767 -5.3 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMa1635 -5.1 -2.0 hypothetical protein compare
SMc02572 -4.7 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
SMc00918 -4.7 -10.0 ATP phosphoribosyltransferase regulatory subunit compare
SMc02765 -4.4 -8.5 tryptophan synthase subunit alpha compare
SMc02569 -4.3 -4.9 imidazole glycerol phosphate synthase subunit HisF compare
SMc00917 -4.1 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc01004 -3.9 -12.2 phosphoribosyl-AMP cyclohydrolase compare
SM_b20810 -3.8 -21.3 membrane-located cell surface saccharide acetylase compare
SMc00017 -3.8 -1.9 homoserine kinase compare
SMc01880 -3.5 -2.4 pantoate--beta-alanine ligase compare
SMc02307 -3.3 -8.7 histidinol dehydrogenase compare
SMc02570 -3.3 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00053 -3.2 -1.2 monovalent cation/H+ antiporter subunit C compare
SMc00427 -2.9 -2.7 peptide chain release factor RF-3 protein compare
SMc00963 -2.8 -1.9 hypothetical protein compare
SMc00012 -2.7 -1.7 cytochrome C oxidase assembly protein compare
SM_b20294 -2.4 -1.7 transcriptional regulator NanR compare
SMc01222 -2.4 -8.7 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02102 -2.2 -3.0 hypothetical protein compare
SMc02574 -2.1 -4.8 imidazoleglycerol-phosphate dehydratase compare
SMc02137 -2.1 -3.2 ornithine carbamoyltransferase compare
SMc03826 -2.0 -1.3 argininosuccinate synthase compare
SMc02145 -2.0 -1.0 signal peptide protein compare
SMc02755 -1.9 -4.3 S-adenosyl-L-homocysteine hydrolase compare
SMc01206 -1.8 -1.4 queuine tRNA-ribosyltransferase compare
SMc03069 -1.8 -3.0 6-phosphogluconolactonase compare
SMc00711 -1.8 -3.3 cyclohexadienyl dehydrogenase compare
SMc01881 -1.7 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01765 -1.7 -1.2 hypothetical protein compare
SMc02245 -1.7 -6.3 dihydroorotate dehydrogenase 2 compare
SMc03140 -1.6 -4.7 transcriptional regulator compare
SMc00640 -1.6 -7.9 phosphoserine aminotransferase compare
SMc01361 -1.6 -3.2 dihydroorotase compare
SMc02362 -1.6 -1.0 cytochrome c-type biogenesis protein CcmE compare
SMc00580 -1.6 -1.8 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc03839 -1.5 -2.2 hypothetical protein compare
SMa0753 -1.5 -0.9 hypothetical protein compare
SM_b20880 -1.5 -6.7 ATP-dependent RNA helicase compare
SM_b21177 -1.5 -6.3 phosphate uptake ABC transporter ATP-binding protein compare
SMc00412 -1.5 -4.3 orotidine 5'-phosphate decarboxylase compare
SMa1639 -1.4 -1.8 hypothetical protein compare
SMc04346 -1.4 -4.0 ketol-acid reductoisomerase compare
SMc01568 -1.4 -1.6 hypothetical protein compare
SMc00293 -1.4 -4.6 homoserine dehydrogenase compare
SMc00189 -1.4 -3.6 cytochrome C1 protein compare
SMc02115 -1.4 -0.7 hypothetical protein compare
SMc04319 -1.4 -2.5 hypothetical protein compare
SMc02055 -1.4 -1.5 phytoene synthase compare
SMc01242 -1.4 -1.5 signal peptide protein compare
SMc00876 -1.4 -3.1 ATP-binding MRP protein compare
SMc00352 -1.3 -1.8 acetyltransferase compare
SMa0846 -1.3 -1.5 transposase, fragment compare
SMc00619 -1.3 -1.4 hypothetical protein compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SMc01800 -1.3 -0.7 cytochrome C oxidase assembly transmembrane protein compare
SMc02753 -1.3 -0.9 PTS system transporter subunit IIA compare
SMc01223 -1.2 -2.9 transcriptional regulator compare
SM_b21175 -1.2 -3.1 phosphate uptake ABC transporter permease compare
SMc02425 -1.2 -3.0 transcriptional regulator compare
SMc00641 -1.2 -4.7 D-3-phosphoglycerate dehydrogenase compare
SM_b20307 -1.2 -0.7 dihydroxyacetone kinase compare
SMc01801 -1.2 -2.4 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc03978 -1.2 -0.8 transketolase compare
SMc01726 -1.1 -5.0 acetylglutamate kinase compare
SMc00067 -1.1 -5.0 outer-membranne lipoprotein compare
SMc01929 -1.1 -2.0 hypothetical protein compare
SM_b20320 -1.1 -1.1 TRAP-type large permease component compare
SMc04003 -1.1 -1.4 50S ribosomal protein L36 compare
SMc01347 -1.1 -2.8 hypothetical protein compare
SMc00579 -1.1 -2.7 dimethyladenosine transferase compare
SMc00187 -1.1 -2.3 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc02287 -1.1 -1.6 DNA-invertase compare
SMc02165 -1.1 -3.9 orotate phosphoribosyltransferase compare
SM_b20282 -1.1 -2.3 spermidine/putrescine ABC transporter permease compare
SM_b20814 -1.1 -4.9 hypothetical protein compare
SMc02897 -1.1 -1.6 cytochrome C transmembrane protein compare
SMc01120 -1.0 -3.2 hypothetical protein compare
SM_b21174 -1.0 -2.9 phosphate uptake ABC transporter permease compare
SMc03070 -1.0 -3.5 glucose-6-phosphate 1-dehydrogenase compare
SMc02050 -1.0 -2.0 trigger factor compare
SMc01494 -1.0 -6.3 phosphoserine phosphatase compare
SMc01153 -1.0 -1.2 enoyl-CoA hydratase compare
SMc02385 -1.0 -1.9 hypothetical protein compare
SMc02166 -1.0 -4.7 dihydroorotase compare
SMc02862 -1.0 -4.4 Pit accessory protein compare
SMc02052 -1.0 -1.0 hypothetical protein compare
SMa1924 -1.0 -0.8 hypothetical protein compare
SMc01438 -1.0 -3.5 protease precursor signal peptide protein compare
SM_b20323 -1.0 -0.9 transcriptional regulator compare
SMc01471 -1.0 -1.6 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02138 -1.0 -3.5 acetylornithine transaminase compare
SMc01569 -1.0 -0.5 carbamoyl phosphate synthase small subunit compare
SM_b21173 -0.9 -1.0 hypothetical protein compare
SMc01041 -0.9 -2.4 NIFR3-like protein compare
SM_b20752 -0.9 -4.0 3-hydroxyisobutyryl-CoA hydrolase compare
SMa0190 -0.9 -4.8 transcriptional regulator compare
SMc00981 -0.9 -3.4 ferredoxin protein compare
SMc04401 -0.9 -3.2 transcriptional regulator compare
SMc01608 -0.9 -3.1 ABC transporter ATP-binding protein compare
SMc02246 -0.9 -0.6 hypothetical protein compare
SMc01605 -0.9 -3.9 periplasmic binding ABC transporter protein compare
SMc04026 -0.9 -4.2 glutamate synthase compare
SMc01440 -0.9 -3.2 hydrolase serine protease transmembrane protein compare
SM_b20580 -0.9 -2.6 LysR family transcriptional regulator compare
SMc00821 -0.9 -0.8 hypothetical protein compare
SM_b21176 -0.8 -3.1 phosphate uptake ABC transporter substrate-binding protein precursor compare
SM_b22001 -0.8 -0.7 hypothetical protein compare
SMc04327 -0.8 -0.9 hypothetical protein compare
SMc04245 -0.8 -4.9 high-affinity zinc uptake system ABC transporter protein compare
SMc04348 -0.8 -1.6 transcriptional regulator compare
SMc04028 -0.8 -6.7 glutamate synthase compare
SMc01607 -0.8 -3.4 permease compare
SMa1630 -0.8 -1.2 hypothetical protein compare
SMc00492 -0.8 -0.5 hypothetical protein compare
SMc01366 -0.8 -2.9 hypothetical protein compare
SMc02164 -0.8 -2.0 fructokinase compare
SMa0431 -0.8 -1.3 hypothetical protein compare
SM_b20387 -0.8 -1.1 transcriptional regulator compare
SM_b20809 -0.8 -2.6 arabinose-5-phosphate isomerase compare
SMc01441 -0.8 -2.3 membrane bound protease compare
SMc02558 -0.8 -2.5 hypothetical protein compare
SMc01613 -0.8 -3.0 ribose-5-phosphate isomerase B compare
SMc01705 -0.8 -2.4 hypothetical protein compare
SMa1017 -0.8 -1.2 hypothetical protein compare
SMa0267 -0.8 -2.8 GntR family transcriptional regulator compare
SMa0869 -0.8 -2.4 acyltransferase compare
SMc01419 -0.7 -1.3 RNA polymerase sigma factor protein compare
SMc01431 -0.7 -5.7 acetolactate synthase 3 catalytic subunit compare
SMc00188 -0.7 -3.2 cytochrome B transmembrane protein compare
SMc01368 -0.7 -2.5 transport transmembrane protein compare
SMc01147 -0.7 -1.1 coproporphyrinogen III oxidase compare
SM_b20105 -0.7 -1.0 transcriptional regulator compare
SMa5007 -0.7 -1.7 transcriptional regulator compare
SMc03974 -0.7 -2.6 hypothetical protein compare
SMa0357 -0.7 -3.5 hypothetical protein compare
SMc04385 -0.7 -2.3 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SM_b21475 -0.7 -1.4 hypothetical protein compare
SMc04243 -0.7 -3.9 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc01360 -0.7 -1.2 aspartate carbamoyltransferase catalytic subunit compare
SMc04088 -0.7 -4.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc04092 -0.7 -1.1 hypothetical protein compare
SMa0211 -0.7 -0.7 hypothetical protein compare
SMc00461 -0.7 -0.8 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc00298 -0.7 -2.1 methionine aminopeptidase compare
SMa0964 -0.7 -1.4 hypothetical protein compare
SMc01521 -0.7 -3.8 nitrogen regulatory protein compare
SMc00241 -0.7 -1.5 transcriptional regulator compare
SMc04389 -0.7 -1.2 hydroxypyruvate reductase compare
SMc00982 -0.7 -1.9 dioxygenase compare
SMc02172 -0.7 -3.7 transcriptional regulator compare
SMa0851 -0.7 -1.8 NodH sulfotransferase compare
SMc03878 -0.7 -1.5 acetoacetyl-CoA reductase compare
SMc03091 -0.7 -2.2 arginase compare
SMc00091 -0.7 -4.0 sulfate adenylyltransferase compare
SM_b20148 -0.7 -2.9 transcriptional regulator compare
SMa1365 -0.7 -0.6 ATP-binding protein compare
SMc04045 -0.7 -3.4 dihydroxy-acid dehydratase compare
SM_b20953 -0.7 -0.8 hypothetical protein compare
SMc02323 -0.7 -2.6 transcriptional regulator compare
SM_b22005 -0.7 -0.9 hypothetical protein compare
SMc04024 -0.7 -2.9 membrane-bound lytic murein transglycosylase compare
SMc02435 -0.7 -0.9 methyltransferase compare
SMa2215 -0.7 -1.7 GntR family transcriptional regulator compare
SMc00196 -0.7 -3.1 transporter compare
SMa1894 -0.7 -1.1 methionine sulfoxide reductase B compare
SMc04246 -0.7 -0.9 transmembrane signal peptide protein compare
SMc00361 -0.7 -1.6 hypothetical protein compare
SMc02861 -0.7 -1.3 phosphate transporter compare
SMc00194 -0.7 -2.1 hypothetical protein compare
SMa2131 -0.7 -2.6 hypothetical protein compare
SMc02505 -0.7 -0.7 hypothetical protein compare
SMc02510 -0.7 -0.5 ferric uptake regulation protein compare
SMc03279 -0.6 -0.8 transposase number 2 for insertion sequence ISRM28 compare
SMc01933 -0.6 -0.8 hypothetical protein compare
SMa0643 -0.6 -0.9 transposase compare
SMc01124 -0.6 -2.8 PII uridylyl-transferase compare
SMc00566 -0.6 -1.6 hypothetical protein compare
SM_b21047 -0.6 -2.5 hypothetical protein compare
SMc03816 -0.6 -3.5 transcriptional regulator compare
SMa0558 -0.6 -1.9 hypothetical protein compare
SM_b21157 -0.6 -3.1 translation initiation inhibitor protein compare
SMc00349 -0.6 -2.7 GTP-binding protein LepA compare
SMc00691 -0.6 -1.6 site-specific tyrosine recombinase XerD compare
SMc04143 -0.6 -2.1 transcriptional regulator compare
SMc02978 -0.6 -1.6 hypothetical protein compare
SMa1002 -0.6 -0.7 hypothetical protein compare
SMc00131 -0.6 -4.2 transcriptional regulator compare
SMc01843 -0.6 -3.5 5,10-methylenetetrahydrofolate reductase compare
SM_b21007 -0.6 -2.8 hypothetical protein compare
SMc02659 -0.6 -1.8 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc04866 -0.6 -2.0 hypothetical protein compare
SM_b20616 -0.6 -1.5 thiamine biosynthesis oxidoreductase compare
SMa1223 -0.6 -1.5 hypothetical protein compare
SMc00944 -0.6 -2.0 hypothetical protein compare
SMc01417 -0.6 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments