Experiment set18IT080 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc02766 -5.8 -11.7 tryptophan synthase subunit beta compare
SMc02767 -5.5 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00236 -5.1 -4.9 Indole-3-glycerol phosphate synthase compare
SMc00235 -5.0 -5.9 anthranilate phosphoribosyltransferase compare
SMc02725 -4.9 -12.3 anthranilate synthase compare
SMc02765 -4.3 -10.8 tryptophan synthase subunit alpha compare
SM_b20810 -4.0 -23.1 membrane-located cell surface saccharide acetylase compare
SMc02569 -4.0 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
SMc00917 -3.8 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMa1635 -3.6 -2.1 hypothetical protein compare
SMc01880 -3.5 -2.4 pantoate--beta-alanine ligase compare
SMc01004 -3.4 -11.9 phosphoribosyl-AMP cyclohydrolase compare
SMc02510 -3.3 -1.3 ferric uptake regulation protein compare
SMc01207 -3.2 -2.2 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02307 -3.1 -8.3 histidinol dehydrogenase compare
SMc00918 -3.1 -11.3 ATP phosphoribosyltransferase regulatory subunit compare
SMc02570 -3.0 -9.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02572 -2.8 -3.9 imidazole glycerol phosphate synthase subunit HisH compare
SMc02906 -2.8 -1.6 hypothetical protein compare
SMc00013 -2.7 -2.7 cytochrome C oxidase subunit III transmembrane protein compare
SMc03127 -2.7 -1.8 ABC transporter permease compare
SMc01222 -2.6 -10.2 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc01881 -2.4 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc00017 -2.2 -1.7 homoserine kinase compare
SMc00963 -2.2 -2.1 hypothetical protein compare
SMc00295 -2.1 -1.2 hypothetical protein compare
SMc03184 -2.1 -1.4 PH adaptation potassium efflux system G transmembrane protein compare
SMc01361 -1.9 -3.1 dihydroorotase compare
SMc03826 -1.9 -1.3 argininosuccinate synthase compare
SMc01223 -1.9 -3.1 transcriptional regulator compare
SMc01472 -1.9 -1.4 50S ribosomal protein L11 methyltransferase compare
SMc00067 -1.9 -7.9 outer-membranne lipoprotein compare
SMc01206 -1.8 -1.4 queuine tRNA-ribosyltransferase compare
SMc02261 -1.7 -4.3 transcriptional regulator compare
SMc02165 -1.6 -7.0 orotate phosphoribosyltransferase compare
SMc00361 -1.6 -2.5 hypothetical protein compare
SMc03069 -1.6 -1.9 6-phosphogluconolactonase compare
SMc02886 -1.5 -1.7 signal peptide protein compare
SMc04296 -1.5 -0.8 cell division protein FtsZ compare
SMc03100 -1.5 -1.2 hypothetical protein compare
SMc02137 -1.4 -3.8 ornithine carbamoyltransferase compare
SMc00821 -1.4 -1.5 hypothetical protein compare
SMc04346 -1.4 -5.4 ketol-acid reductoisomerase compare
SM_b20282 -1.4 -3.3 spermidine/putrescine ABC transporter permease compare
SM_b20105 -1.3 -1.4 transcriptional regulator compare
SMc02115 -1.3 -0.7 hypothetical protein compare
SMc00293 -1.3 -4.5 homoserine dehydrogenase compare
SMc00876 -1.3 -2.9 ATP-binding MRP protein compare
SM_b21175 -1.3 -2.9 phosphate uptake ABC transporter permease compare
SMc02574 -1.3 -3.5 imidazoleglycerol-phosphate dehydratase compare
SMc02245 -1.3 -3.0 dihydroorotate dehydrogenase 2 compare
SMc00412 -1.3 -3.1 orotidine 5'-phosphate decarboxylase compare
SMc01441 -1.3 -5.0 membrane bound protease compare
SMc02246 -1.3 -0.9 hypothetical protein compare
SMc03763 -1.3 -0.8 cytosine-specific methyltransferase compare
SMc02166 -1.2 -5.5 dihydroorotase compare
SMc00976 -1.2 -1.7 enoyl-CoA hydratase compare
SMc01120 -1.2 -2.7 hypothetical protein compare
SMc00914 -1.2 -2.4 oxidoreductase compare
SMc04001 -1.2 -1.2 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00427 -1.2 -1.3 peptide chain release factor RF-3 protein compare
SMc03070 -1.2 -3.7 glucose-6-phosphate 1-dehydrogenase compare
SM_b20953 -1.1 -1.2 hypothetical protein compare
SMc02234 -1.1 -1.4 hypothetical protein compare
SMc02362 -1.1 -1.0 cytochrome c-type biogenesis protein CcmE compare
SMc02385 -1.1 -2.3 hypothetical protein compare
SMc03978 -1.1 -0.7 transketolase compare
SMc00856 -1.1 -1.0 hypothetical protein compare
SM_b21177 -1.1 -4.5 phosphate uptake ABC transporter ATP-binding protein compare
SMc00641 -1.1 -4.6 D-3-phosphoglycerate dehydrogenase compare
SMc00351 -1.1 -1.4 hypothetical protein compare
SMc00451 -1.1 -4.3 processing protease compare
SMa1630 -1.1 -2.0 hypothetical protein compare
SMc01929 -1.1 -1.8 hypothetical protein compare
SMc02435 -1.0 -1.2 methyltransferase compare
SM_b21176 -1.0 -3.1 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02287 -1.0 -2.9 DNA-invertase compare
SMa0955 -1.0 -1.2 GntR family transcriptional regulator compare
SMc00691 -1.0 -2.4 site-specific tyrosine recombinase XerD compare
SMc04242 -1.0 -1.5 zinc uptake regulation protein compare
SMa2151 -1.0 -2.7 DNA-binding protein compare
SMc02897 -1.0 -1.8 cytochrome C transmembrane protein compare
SM_b20814 -1.0 -6.0 hypothetical protein compare
SM_b20880 -1.0 -4.3 ATP-dependent RNA helicase compare
SMc00353 -1.0 -1.6 transmembrane protein compare
SMc03140 -1.0 -3.1 transcriptional regulator compare
SMa0846 -0.9 -1.2 transposase, fragment compare
SMc00334 -0.9 -0.9 cytidylate kinase compare
SMc00640 -0.9 -4.8 phosphoserine aminotransferase compare
SMc00711 -0.9 -2.6 cyclohexadienyl dehydrogenase compare
SM_b20809 -0.9 -3.1 arabinose-5-phosphate isomerase compare
SMc04453 -0.9 -1.1 hypothetical protein compare
SMc01726 -0.9 -4.3 acetylglutamate kinase compare
SMa0882 -0.9 -1.2 hypothetical protein compare
SMc01606 -0.9 -4.2 permease compare
SMc01147 -0.9 -1.2 coproporphyrinogen III oxidase compare
SMc03128 -0.9 -2.5 ABC transporter permease compare
SM_b20294 -0.9 -1.0 transcriptional regulator NanR compare
SMc00982 -0.9 -3.2 dioxygenase compare
SM_b20148 -0.9 -2.6 transcriptional regulator compare
SMc01613 -0.9 -2.8 ribose-5-phosphate isomerase B compare
SMc01845 -0.9 -1.0 transglycosylase transmembrane protein compare
SMc02102 -0.9 -1.8 hypothetical protein compare
SMc00981 -0.9 -2.9 ferredoxin protein compare
SMc01569 -0.9 -0.5 carbamoyl phosphate synthase small subunit compare
SMc02058 -0.9 -1.6 YAJC protein compare
SMc03839 -0.9 -1.5 hypothetical protein compare
SMc02787 -0.9 -2.2 hypothetical protein compare
SMc04385 -0.9 -3.3 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SM_b21174 -0.9 -2.4 phosphate uptake ABC transporter permease compare
SMc02861 -0.9 -1.2 phosphate transporter compare
SM_b21035 -0.9 -2.3 hypothetical protein compare
SMc00667 -0.9 -1.5 hypothetical protein compare
SMa2289 -0.9 -1.0 hypothetical protein compare
SMc00188 -0.8 -3.9 cytochrome B transmembrane protein compare
SMc05009 -0.8 -2.1 nodulation protein NolR compare
SMa1053 -0.8 -0.9 hypothetical protein compare
SMc01605 -0.8 -3.1 periplasmic binding ABC transporter protein compare
SMc02266 -0.8 -1.4 hypothetical protein compare
SMc00085 -0.8 -1.9 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc02558 -0.8 -2.6 hypothetical protein compare
SMc04026 -0.8 -3.7 glutamate synthase compare
SMa1697 -0.8 -1.5 hypothetical protein compare
SMc01368 -0.8 -2.3 transport transmembrane protein compare
SMc02582 -0.8 -1.8 hypothetical protein compare
SMc01438 -0.8 -2.5 protease precursor signal peptide protein compare
SMc01440 -0.8 -3.2 hydrolase serine protease transmembrane protein compare
SMc04121 -0.8 -1.1 uracil phosphoribosyltransferase compare
SMc03967 -0.8 -0.6 Holliday junction resolvase compare
SMc04401 -0.8 -2.8 transcriptional regulator compare
SM_b21454 -0.8 -1.4 hypothetical protein compare
SMc02755 -0.8 -2.8 S-adenosyl-L-homocysteine hydrolase compare
SMc04246 -0.8 -1.1 transmembrane signal peptide protein compare
SMa1361 -0.8 -2.3 hypothetical protein compare
SMc01607 -0.8 -3.8 permease compare
SMc03835 -0.8 -1.7 2'-5' RNA ligase compare
SMa0645 -0.8 -1.6 hypothetical protein compare
SMc02451 -0.8 -1.0 hypothetical protein compare
SM_b20701 -0.8 -0.9 hypothetical protein compare
SM_b21182 -0.7 -3.9 hypothetical protein compare
SMc01494 -0.7 -3.9 phosphoserine phosphatase compare
SMc03124 -0.7 -1.7 periplasmic binding ABC transporter protein compare
SM_b20752 -0.7 -3.6 3-hydroxyisobutyryl-CoA hydrolase compare
SMc04866 -0.7 -1.2 hypothetical protein compare
SMc04028 -0.7 -5.3 glutamate synthase compare
SMc02221 -0.7 -2.0 hypothetical protein compare
SMc04348 -0.7 -1.5 transcriptional regulator compare
SMc00010 -0.7 -0.6 cytochrome C oxidase polypeptide I transmembrane protein compare
SMa1136 -0.7 -1.3 hypothetical protein compare
SMc02866 -0.7 -1.9 transcriptional regulator compare
SMc04432 -0.7 -2.5 hypothetical protein compare
SMc01608 -0.7 -2.6 ABC transporter ATP-binding protein compare
SMc02720 -0.7 -2.3 ATP-dependent Clp protease proteolytic subunit compare
SMa1017 -0.7 -1.4 hypothetical protein compare
SMa0740 -0.7 -1.3 hypothetical protein compare
SMc03974 -0.7 -2.9 hypothetical protein compare
SMc00619 -0.7 -0.7 hypothetical protein compare
SMc01853 -0.7 -2.1 hypothetical protein compare
SMc01568 -0.7 -1.0 hypothetical protein compare
SMc02242 -0.7 -3.7 hypothetical protein compare
SM_b21476 -0.7 -2.7 hypothetical protein compare
SMc02862 -0.7 -2.7 Pit accessory protein compare
SMc00505 -0.7 -1.8 hypothetical protein compare
SM_b20313 -0.7 -3.4 glycerone kinase compare
SMc02425 -0.7 -1.4 transcriptional regulator compare
SMa0841 -0.7 -2.1 transposase, fragment compare
SMc00072 -0.7 -0.8 peroxiredoxin protein compare
SMc02171 -0.7 -1.5 periplasmic binding ABC transporter protein compare
SMc01447 -0.7 -0.8 hypothetical protein compare
SMa1808 -0.7 -2.3 hypothetical protein compare
SMc02169 -0.7 -1.2 ABC transporter ATP-binding protein compare
SMc01119 -0.7 -1.3 hypothetical protein compare
SMa2215 -0.7 -2.1 GntR family transcriptional regulator compare
SM_b20021 -0.7 -0.6 transcriptional regulator compare
SM_b20549 -0.7 -2.0 hypothetical protein compare
SMc01417 -0.7 -2.4 hypothetical protein compare
SMc01153 -0.6 -0.7 enoyl-CoA hydratase compare
SMc00280 -0.6 -2.2 hypothetical protein compare
SMc02641 -0.6 -1.1 UDP-glucose 6-dehydrogenase compare
SMc00806 -0.6 -1.9 hypothetical protein compare
SMc02724 -0.6 -1.2 hypothetical protein compare
SM_b20725 -0.6 -1.4 hypothetical protein compare
SM_b21471 -0.6 -2.2 hypothetical protein compare
SMc04245 -0.6 -3.9 high-affinity zinc uptake system ABC transporter protein compare
SM_b20392 -0.6 -2.9 transcriptional regulator NanR compare
SMc01431 -0.6 -4.8 acetolactate synthase 3 catalytic subunit compare
SMc02520 -0.6 -3.6 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc01517 -0.6 -0.8 hypothetical protein compare
SMc02867 -0.6 -1.4 multidrug-efflux system transmembrane protein compare
SMc04428 -0.6 -2.0 hypothetical protein compare
SMc02544 -0.6 -0.6 hypothetical protein compare
SM_b20146 -0.6 -2.1 pyridoxal phosphate biosynthetic protein compare
SMc02138 -0.6 -2.0 acetylornithine transaminase compare
SMc00959 -0.6 -1.5 hypothetical protein compare
SM_b20773 -0.6 -1.9 GntR family transcriptional regulator compare
SMc01577 -0.6 -1.3 hypothetical protein compare
SMa0341 -0.6 -1.5 hypothetical protein compare
SMc04045 -0.6 -3.7 dihydroxy-acid dehydratase compare
SMa0734 -0.6 -1.1 hypothetical protein compare
SMc02978 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments