Experiment set18IT079 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc00236 -6.3 -4.3 Indole-3-glycerol phosphate synthase compare
SMc02766 -6.3 -12.0 tryptophan synthase subunit beta compare
SMc02767 -5.9 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00235 -5.6 -5.4 anthranilate phosphoribosyltransferase compare
SMc02725 -5.3 -12.9 anthranilate synthase compare
SMa1635 -5.1 -2.2 hypothetical protein compare
SMc02765 -4.5 -12.6 tryptophan synthase subunit alpha compare
SMc02569 -4.4 -5.1 imidazole glycerol phosphate synthase subunit HisF compare
SMc02570 -3.9 -9.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SM_b20810 -3.7 -23.0 membrane-located cell surface saccharide acetylase compare
SMc02572 -3.6 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
SMc00917 -3.5 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00918 -3.5 -11.7 ATP phosphoribosyltransferase regulatory subunit compare
SMc01004 -3.3 -9.4 phosphoribosyl-AMP cyclohydrolase compare
SMc02307 -2.9 -8.8 histidinol dehydrogenase compare
SMc01222 -2.8 -10.1 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc03100 -2.6 -1.9 hypothetical protein compare
SMc01880 -2.4 -3.2 pantoate--beta-alanine ligase compare
SMc01881 -2.2 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02137 -2.2 -5.6 ornithine carbamoyltransferase compare
SMc01206 -2.1 -2.1 queuine tRNA-ribosyltransferase compare
SMc01361 -2.1 -3.6 dihydroorotase compare
SMc02145 -2.0 -1.1 signal peptide protein compare
SMc00963 -1.9 -2.2 hypothetical protein compare
SMc02897 -1.8 -2.4 cytochrome C transmembrane protein compare
SMc00067 -1.7 -7.0 outer-membranne lipoprotein compare
SM_b21173 -1.6 -1.9 hypothetical protein compare
SMc00914 -1.6 -3.1 oxidoreductase compare
SMc00412 -1.6 -3.7 orotidine 5'-phosphate decarboxylase compare
SMc00450 -1.6 -1.1 protoheme IX farnesyltransferase compare
SMc02232 -1.6 -2.3 hypothetical protein compare
SMc00361 -1.5 -3.0 hypothetical protein compare
SM_b20953 -1.5 -1.5 hypothetical protein compare
SMc04346 -1.4 -5.2 ketol-acid reductoisomerase compare
SMc02115 -1.4 -0.8 hypothetical protein compare
SM_b21175 -1.4 -4.5 phosphate uptake ABC transporter permease compare
SMc02909 -1.4 -1.3 transglycosylase transmembrane protein compare
SMc00293 -1.4 -5.1 homoserine dehydrogenase compare
SMc01223 -1.4 -2.2 transcriptional regulator compare
SMc03826 -1.4 -1.3 argininosuccinate synthase compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SMc00017 -1.3 -0.7 homoserine kinase compare
SMc02165 -1.3 -6.2 orotate phosphoribosyltransferase compare
SMc01800 -1.3 -0.7 cytochrome C oxidase assembly transmembrane protein compare
SMc02574 -1.3 -2.5 imidazoleglycerol-phosphate dehydratase compare
SMc03069 -1.3 -1.9 6-phosphogluconolactonase compare
SM_b21679 -1.3 -1.5 hypothetical protein compare
SMc01419 -1.3 -2.1 RNA polymerase sigma factor protein compare
SM_b21177 -1.3 -4.7 phosphate uptake ABC transporter ATP-binding protein compare
SM_b20880 -1.3 -6.9 ATP-dependent RNA helicase compare
SMc02166 -1.2 -7.3 dihydroorotase compare
SMc00427 -1.2 -1.8 peptide chain release factor RF-3 protein compare
SMc02755 -1.2 -4.1 S-adenosyl-L-homocysteine hydrolase compare
SMc02861 -1.2 -2.1 phosphate transporter compare
SMc00711 -1.2 -3.9 cyclohexadienyl dehydrogenase compare
SMc00619 -1.2 -1.3 hypothetical protein compare
SMc02510 -1.2 -0.8 ferric uptake regulation protein compare
SMc02543 -1.2 -4.7 hypothetical protein compare
SMc02077 -1.2 -2.1 exodeoxyribonuclease III protein compare
SMc04003 -1.1 -1.5 50S ribosomal protein L36 compare
SMc00821 -1.1 -1.9 hypothetical protein compare
SMa2215 -1.1 -3.5 GntR family transcriptional regulator compare
SMc02055 -1.1 -1.2 phytoene synthase compare
SMc00010 -1.1 -0.7 cytochrome C oxidase polypeptide I transmembrane protein compare
SM_b20282 -1.1 -3.0 spermidine/putrescine ABC transporter permease compare
SMc02245 -1.1 -4.1 dihydroorotate dehydrogenase 2 compare
SMc00353 -1.1 -1.5 transmembrane protein compare
SM_b21480 -1.1 -1.4 hypothetical protein compare
SMc00641 -1.1 -4.9 D-3-phosphoglycerate dehydrogenase compare
SMc00451 -1.0 -3.7 processing protease compare
SMc01569 -1.0 -0.5 carbamoyl phosphate synthase small subunit compare
SMc02753 -1.0 -0.9 PTS system transporter subunit IIA compare
SMc02173 -1.0 -1.6 hypothetical protein compare
SM_b20814 -1.0 -4.6 hypothetical protein compare
SMc00298 -0.9 -2.4 methionine aminopeptidase compare
SMc02102 -0.9 -2.0 hypothetical protein compare
SMa2253 -0.9 -1.6 hypothetical protein compare
SMc01440 -0.9 -4.0 hydrolase serine protease transmembrane protein compare
SMc00188 -0.9 -4.7 cytochrome B transmembrane protein compare
SMc01471 -0.9 -1.9 cytochrome C oxidase assembly factor transmembrane protein compare
SM_b20962 -0.9 -2.3 phoshomethylpyrimidine kinase compare
SMc00876 -0.9 -2.4 ATP-binding MRP protein compare
SMc02246 -0.9 -0.7 hypothetical protein compare
SMc00013 -0.9 -1.2 cytochrome C oxidase subunit III transmembrane protein compare
SMc00981 -0.9 -3.6 ferredoxin protein compare
SMc00187 -0.9 -2.0 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMa0149 -0.9 -2.6 transcription elongation factor regulatory protein compare
SMc02051 -0.9 -1.8 hypothetical protein compare
SMc01858 -0.9 -1.1 S-adenosyl-methyltransferase MraW compare
SMc00760 -0.9 -2.3 recombinase A compare
SMc03967 -0.9 -0.8 Holliday junction resolvase compare
SMc02435 -0.9 -1.1 methyltransferase compare
SMc01207 -0.9 -0.9 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc04245 -0.9 -5.5 high-affinity zinc uptake system ABC transporter protein compare
SMc02485 -0.9 -1.7 signal peptide protein compare
SMa0719 -0.9 -2.2 short-chain alcohol dehydrogenase compare
SMc03070 -0.9 -3.1 glucose-6-phosphate 1-dehydrogenase compare
SMc01605 -0.9 -3.8 periplasmic binding ABC transporter protein compare
SMc04348 -0.9 -2.1 transcriptional regulator compare
SMc01726 -0.9 -2.3 acetylglutamate kinase compare
SMa1630 -0.8 -1.6 hypothetical protein compare
SMc01441 -0.8 -3.0 membrane bound protease compare
SM_b21035 -0.8 -2.5 hypothetical protein compare
SMc02647 -0.8 -1.7 transcriptional regulator compare
SMc04428 -0.8 -2.1 hypothetical protein compare
SMc02866 -0.8 -2.1 transcriptional regulator compare
SM_b20994 -0.8 -1.7 hypothetical protein compare
SMc01144 -0.8 -1.5 ribonuclease PH compare
SM_b21347 -0.8 -1.3 pectin degradation protein compare
SMc02685 -0.8 -1.7 hypothetical protein compare
SMc00579 -0.8 -2.4 dimethyladenosine transferase compare
SMc01606 -0.8 -3.3 permease compare
SMc01120 -0.8 -2.4 hypothetical protein compare
SM_b20752 -0.8 -4.1 3-hydroxyisobutyryl-CoA hydrolase compare
SMc00640 -0.8 -4.3 phosphoserine aminotransferase compare
SMc00802 -0.8 -0.8 hypothetical protein compare
SM_b21182 -0.8 -4.3 hypothetical protein compare
SMa0450 -0.8 -1.2 hypothetical protein compare
SMc03184 -0.8 -1.0 PH adaptation potassium efflux system G transmembrane protein compare
SMc01368 -0.8 -2.2 transport transmembrane protein compare
SMc04389 -0.8 -1.4 hydroxypyruvate reductase compare
SM_b20302 -0.8 -1.9 hypothetical protein compare
SMc03140 -0.8 -2.6 transcriptional regulator compare
SM_b21176 -0.8 -3.0 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc01613 -0.8 -2.7 ribose-5-phosphate isomerase B compare
SMc03930 -0.8 -1.3 sarcosine oxidase subunit gamma compare
SMc04028 -0.8 -6.2 glutamate synthase compare
SMc02385 -0.8 -1.4 hypothetical protein compare
SMa5033 -0.8 -0.9 hypothetical protein compare
SMc01833 -0.8 -2.5 hypothetical protein compare
SMc00709 -0.8 -2.2 hypothetical protein compare
SMc01438 -0.8 -2.1 protease precursor signal peptide protein compare
SMc01505 -0.7 -1.1 hypothetical protein compare
SMc02164 -0.7 -1.7 fructokinase compare
SMc00667 -0.7 -1.2 hypothetical protein compare
SMc04213 -0.7 -1.4 diacylglycerol kinase compare
SMc01608 -0.7 -2.7 ABC transporter ATP-binding protein compare
SMc01607 -0.7 -3.2 permease compare
SMc01147 -0.7 -1.1 coproporphyrinogen III oxidase compare
SMa0736 -0.7 -1.7 hypothetical protein compare
SMc00085 -0.7 -2.3 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc02695 -0.7 -2.8 GTP-dependent nucleic acid-binding protein EngD compare
SMc03839 -0.7 -1.1 hypothetical protein compare
SM_b20580 -0.7 -2.3 LysR family transcriptional regulator compare
SMc02050 -0.7 -2.0 trigger factor compare
SMc04401 -0.7 -2.9 transcriptional regulator compare
SM_b20375 -0.7 -1.8 transcriptional regulator compare
SMc03051 -0.7 -2.4 flagellar biosynthesis repressor FlbT compare
SMc01501 -0.7 -1.3 mannitol 2-dehydrogenase compare
SMc01494 -0.7 -4.8 phosphoserine phosphatase compare
SM_b21669 -0.7 -1.2 hypothetical protein compare
SMa0160 -0.7 -3.5 GntR family transcriptional regulator compare
SMc02941 -0.7 -2.7 hypothetical protein compare
SMa1700 -0.7 -1.5 hypothetical protein compare
SMc03124 -0.7 -1.7 periplasmic binding ABC transporter protein compare
SMc01260 -0.7 -2.3 transcriptional regulator compare
SMc01342 -0.7 -2.0 hypothetical protein compare
SMc02362 -0.7 -0.6 cytochrome c-type biogenesis protein CcmE compare
SM_b21441 -0.7 -1.3 inosine-5'-monophosphate dehydrogenase compare
SM_b21633 -0.7 -1.0 enoyl-CoA hydratase compare
SMc04296 -0.7 -0.4 cell division protein FtsZ compare
SMc00419 -0.7 -1.3 glutathione synthetase compare
SMc00555 -0.7 -0.8 colicin V production transmembrane protein compare
SMc04391 -0.7 -1.1 3-ketoacyl-ACP reductase compare
SMa2349 -0.7 -2.3 xanthine dehydrogenase iron-sulfur-binding subunit compare
SMc02250 -0.7 -1.7 large-conductance mechanosensitive channel compare
SMa1052 -0.7 -1.0 hypothetical protein compare
SM_b20809 -0.7 -2.7 arabinose-5-phosphate isomerase compare
SMc01015 -0.6 -2.4 hypothetical protein compare
SMc01366 -0.6 -2.5 hypothetical protein compare
SMa1757 -0.6 -1.5 Short chain compare
SMc03128 -0.6 -1.8 ABC transporter permease compare
SMa1413 -0.6 -1.5 hypothetical protein compare
SMc01431 -0.6 -4.9 acetolactate synthase 3 catalytic subunit compare
SMc04026 -0.6 -3.5 glutamate synthase compare
SMc01930 -0.6 -1.8 hypothetical protein compare
SMc00099 -0.6 -1.0 alkylphosphonate uptake protein compare
SMc00012 -0.6 -0.6 cytochrome C oxidase assembly protein compare
SMc02659 -0.6 -1.8 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMa0760 -0.6 -1.0 FixT2 anti-kinase compare
SMc02862 -0.6 -3.0 Pit accessory protein compare
SMc00982 -0.6 -2.3 dioxygenase compare
SM_b20117 -0.6 -1.4 sugar transferase compare
SMc00009 -0.6 -2.9 cytochrome C oxidase subunit II protein compare
SMa5007 -0.6 -2.3 transcriptional regulator compare
SMc04161 -0.6 -1.9 hypothetical protein compare
SMa1711 -0.6 -2.1 arginase compare
SM_b20148 -0.6 -2.4 transcriptional regulator compare
SMc01417 -0.6 -2.3 hypothetical protein compare
SM_b21509 -0.6 -1.3 plasmid stability protein compare
SMc01842 -0.6 -1.4 methyltransferase transcription regulator protein compare
SMc00132 -0.6 -1.2 hypothetical protein compare
SMc04045 -0.6 -3.1 dihydroxy-acid dehydratase compare
SMc00090 -0.6 -3.2 sulfate adenylyltransferase compare
SMc04406 -0.6 -1.2 hypothetical protein compare
SMc00286 -0.6 -1.3 hemolysin-type calcium-binding protein compare
SMc02138 -0.6 -2.4 acetylornithine transaminase compare
SMa0267 -0.6 -2.2 GntR family transcriptional regulator compare
SMc01556 -0.6 -1.1 hypothetical protein compare
SMc02978 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments