Experiment set18IT078 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc02766 -6.1 -12.4 tryptophan synthase subunit beta compare
SMc02725 -5.7 -11.5 anthranilate synthase compare
SMc02767 -5.6 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00235 -5.3 -6.3 anthranilate phosphoribosyltransferase compare
SMa1635 -5.1 -2.1 hypothetical protein compare
SMc00236 -4.6 -4.2 Indole-3-glycerol phosphate synthase compare
SMc02765 -4.5 -10.0 tryptophan synthase subunit alpha compare
SMc00917 -4.2 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02572 -4.1 -4.3 imidazole glycerol phosphate synthase subunit HisH compare
SMc00918 -3.7 -11.4 ATP phosphoribosyltransferase regulatory subunit compare
SMc01880 -3.5 -2.4 pantoate--beta-alanine ligase compare
SM_b20810 -3.5 -21.4 membrane-located cell surface saccharide acetylase compare
SMc00013 -3.4 -3.3 cytochrome C oxidase subunit III transmembrane protein compare
SMc01881 -3.2 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01004 -3.1 -13.5 phosphoribosyl-AMP cyclohydrolase compare
SMc02570 -3.0 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02569 -2.9 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
SMc02897 -2.9 -3.3 cytochrome C transmembrane protein compare
SMc00017 -2.6 -1.4 homoserine kinase compare
SMc01845 -2.4 -1.6 transglycosylase transmembrane protein compare
SMc02307 -2.3 -6.8 histidinol dehydrogenase compare
SMc01222 -2.1 -9.2 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02574 -2.0 -7.2 imidazoleglycerol-phosphate dehydratase compare
SMc03826 -2.0 -1.3 argininosuccinate synthase compare
SMc02145 -2.0 -1.1 signal peptide protein compare
SMc02510 -1.9 -1.1 ferric uptake regulation protein compare
SMc02753 -1.8 -1.3 PTS system transporter subunit IIA compare
SMc00963 -1.8 -1.7 hypothetical protein compare
SMc01206 -1.7 -1.9 queuine tRNA-ribosyltransferase compare
SMc00711 -1.6 -4.3 cyclohexadienyl dehydrogenase compare
SMc00412 -1.6 -4.4 orotidine 5'-phosphate decarboxylase compare
SMc03127 -1.6 -1.6 ABC transporter permease compare
SMc02362 -1.6 -1.1 cytochrome c-type biogenesis protein CcmE compare
SMc00450 -1.6 -1.1 protoheme IX farnesyltransferase compare
SMc00640 -1.6 -7.3 phosphoserine aminotransferase compare
SMc01147 -1.5 -1.4 coproporphyrinogen III oxidase compare
SMc00067 -1.5 -6.1 outer-membranne lipoprotein compare
SMa0734 -1.5 -1.7 hypothetical protein compare
SM_b21177 -1.5 -6.4 phosphate uptake ABC transporter ATP-binding protein compare
SMc00295 -1.4 -1.1 hypothetical protein compare
SM_b20105 -1.4 -2.1 transcriptional regulator compare
SMc02055 -1.4 -1.5 phytoene synthase compare
SMa0431 -1.4 -1.9 hypothetical protein compare
SMa0846 -1.4 -1.6 transposase, fragment compare
SMc00293 -1.3 -5.9 homoserine dehydrogenase compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SMc01800 -1.3 -0.7 cytochrome C oxidase assembly transmembrane protein compare
SMc01974 -1.3 -2.6 transcriptional regulator compare
SMc01119 -1.3 -2.1 hypothetical protein compare
SMc02425 -1.3 -2.6 transcriptional regulator compare
SMc02886 -1.3 -2.9 signal peptide protein compare
SMc02287 -1.2 -3.3 DNA-invertase compare
SM_b20540 -1.2 -1.5 hypothetical protein compare
SMc00876 -1.2 -2.8 ATP-binding MRP protein compare
SMc02137 -1.2 -3.9 ornithine carbamoyltransferase compare
SMc00085 -1.2 -3.6 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc04385 -1.2 -3.8 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SM_b20294 -1.2 -1.6 transcriptional regulator NanR compare
SMc02495 -1.2 -1.2 translaldolase compare
SMc02102 -1.1 -2.2 hypothetical protein compare
SMc00189 -1.1 -3.5 cytochrome C1 protein compare
SMc02166 -1.1 -5.9 dihydroorotase compare
SMc02647 -1.1 -2.1 transcriptional regulator compare
SMc01501 -1.1 -1.2 mannitol 2-dehydrogenase compare
SMc04346 -1.1 -4.9 ketol-acid reductoisomerase compare
SMc02245 -1.1 -3.9 dihydroorotate dehydrogenase 2 compare
SM_b21175 -1.1 -3.1 phosphate uptake ABC transporter permease compare
SMa0144 -1.1 -1.0 hypothetical protein compare
SMc03069 -1.1 -2.4 6-phosphogluconolactonase compare
SMa1921 -1.1 -1.1 hypothetical protein compare
SMc00361 -1.1 -1.3 hypothetical protein compare
SM_b20880 -1.1 -5.3 ATP-dependent RNA helicase compare
SMc02866 -1.1 -2.7 transcriptional regulator compare
SMc02165 -1.1 -4.7 orotate phosphoribosyltransferase compare
SMc01360 -1.1 -1.5 aspartate carbamoyltransferase catalytic subunit compare
SM_b21026 -1.1 -2.5 exopeptide compare
SMc02385 -1.0 -2.1 hypothetical protein compare
SMc02755 -1.0 -3.7 S-adenosyl-L-homocysteine hydrolase compare
SMc00579 -1.0 -2.7 dimethyladenosine transferase compare
SMc02052 -1.0 -1.1 hypothetical protein compare
SMc00619 -1.0 -1.1 hypothetical protein compare
SMc03978 -1.0 -0.9 transketolase compare
SMc00188 -1.0 -4.9 cytochrome B transmembrane protein compare
SMc00566 -1.0 -2.2 hypothetical protein compare
SM_b21174 -1.0 -3.9 phosphate uptake ABC transporter permease compare
SMa1924 -1.0 -0.9 hypothetical protein compare
SM_b20293 -1.0 -0.6 hypothetical protein compare
SMc04348 -1.0 -1.5 transcriptional regulator compare
SMc01223 -1.0 -3.2 transcriptional regulator compare
SMc01569 -0.9 -0.5 carbamoyl phosphate synthase small subunit compare
SMc00982 -0.9 -3.3 dioxygenase compare
SM_b20055 -0.9 -1.7 transcriptional regulator compare
SMc02232 -0.9 -1.6 hypothetical protein compare
SM_b21679 -0.9 -1.1 hypothetical protein compare
SMc01441 -0.9 -3.3 membrane bound protease compare
SMc02435 -0.9 -1.2 methyltransferase compare
SMc04221 -0.9 -2.8 hypothetical protein compare
SMc02246 -0.9 -0.7 hypothetical protein compare
SMc02164 -0.9 -1.9 fructokinase compare
SMc02862 -0.9 -4.4 Pit accessory protein compare
SMc00009 -0.9 -3.8 cytochrome C oxidase subunit II protein compare
SMc01726 -0.9 -3.3 acetylglutamate kinase compare
SMc01440 -0.9 -2.4 hydrolase serine protease transmembrane protein compare
SMc03967 -0.9 -0.7 Holliday junction resolvase compare
SMc00981 -0.9 -4.0 ferredoxin protein compare
SMc00351 -0.9 -1.2 hypothetical protein compare
SMc04028 -0.9 -7.3 glutamate synthase compare
SM_b20814 -0.9 -5.2 hypothetical protein compare
SMa0995 -0.9 -3.1 TRm5 transposase compare
SMc04026 -0.9 -4.9 glutamate synthase compare
SM_b20752 -0.8 -4.2 3-hydroxyisobutyryl-CoA hydrolase compare
SMc01144 -0.8 -1.6 ribonuclease PH compare
SMc01431 -0.8 -6.2 acetolactate synthase 3 catalytic subunit compare
SMc00029 -0.8 -2.5 hypothetical protein compare
SMc02697 -0.8 -1.3 hypothetical protein compare
SM_b20282 -0.8 -1.4 spermidine/putrescine ABC transporter permease compare
SMc00641 -0.8 -4.2 D-3-phosphoglycerate dehydrogenase compare
SMc00580 -0.8 -1.2 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc01606 -0.8 -3.9 permease compare
SMc02543 -0.8 -3.2 hypothetical protein compare
SMc03242 -0.8 -1.3 GTP-binding protein compare
SMc03070 -0.8 -2.9 glucose-6-phosphate 1-dehydrogenase compare
SMc02978 -0.8 -2.5 hypothetical protein compare
SMa1700 -0.8 -1.4 hypothetical protein compare
SM_b20897 -0.8 -1.3 hypothetical protein compare
SMa5007 -0.8 -2.0 transcriptional regulator compare
SMc03184 -0.8 -0.7 PH adaptation potassium efflux system G transmembrane protein compare
SMc00010 -0.8 -0.7 cytochrome C oxidase polypeptide I transmembrane protein compare
SM_b20148 -0.8 -3.2 transcriptional regulator compare
SM_b20809 -0.8 -2.8 arabinose-5-phosphate isomerase compare
SMc01607 -0.8 -3.8 permease compare
SMc01366 -0.7 -3.5 hypothetical protein compare
SM_b21182 -0.7 -4.2 hypothetical protein compare
SMc02318 -0.7 -1.2 hypothetical protein compare
SMc04344 -0.7 -1.6 signal peptide protein compare
SMc01608 -0.7 -2.7 ABC transporter ATP-binding protein compare
SMc02909 -0.7 -0.8 transglycosylase transmembrane protein compare
SM_b21633 -0.7 -1.0 enoyl-CoA hydratase compare
SMc01120 -0.7 -2.1 hypothetical protein compare
SMc01494 -0.7 -5.2 phosphoserine phosphatase compare
SM_b21296 -0.7 -2.2 hypothetical protein compare
SMc01438 -0.7 -2.2 protease precursor signal peptide protein compare
SMc01178 -0.7 -1.2 multidrug transmembrane resistance signal peptide protein compare
SMc02138 -0.7 -2.7 acetylornithine transaminase compare
SMc04245 -0.7 -4.7 high-affinity zinc uptake system ABC transporter protein compare
SMc02799 -0.7 -1.8 16S rRNA methyltransferase GidB compare
SMc02833 -0.7 -0.8 penicillin-insensitive murein endopeptidase compare
SMc02718 -0.7 -1.7 hypothetical protein compare
SMc03930 -0.7 -1.1 sarcosine oxidase subunit gamma compare
SM_b20773 -0.7 -1.6 GntR family transcriptional regulator compare
SMc01280 -0.7 -1.0 protease compare
SMc04296 -0.7 -0.5 cell division protein FtsZ compare
SMc01605 -0.7 -2.8 periplasmic binding ABC transporter protein compare
SMc02050 -0.7 -1.9 trigger factor compare
SMc04432 -0.7 -2.5 hypothetical protein compare
SM_b20555 -0.7 -2.1 hypothetical protein compare
SMc00187 -0.7 -0.9 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc02261 -0.7 -1.5 transcriptional regulator compare
SMc01131 -0.7 -1.8 hypothetical protein compare
SMc04232 -0.7 -1.2 glycine rich transmembrane protein compare
SMc02151 -0.7 -2.0 hypothetical protein compare
SMc01367 -0.7 -2.6 hypothetical protein compare
SMc00451 -0.6 -3.1 processing protease compare
SMc04045 -0.6 -3.4 dihydroxy-acid dehydratase compare
SMc02051 -0.6 -1.0 hypothetical protein compare
SMc00427 -0.6 -0.9 peptide chain release factor RF-3 protein compare
SMc04383 -0.6 -2.5 putative hydrolase, required for lysine catabolism (from data) compare
SMc02787 -0.6 -2.0 hypothetical protein compare
SMc03093 -0.6 -1.7 hypothetical protein compare
SMc02561 -0.6 -1.6 hypothetical protein compare
SMc01768 -0.6 -1.9 transcriptional regulator compare
SMc00914 -0.6 -1.5 oxidoreductase compare
SM_b21347 -0.6 -1.0 pectin degradation protein compare
SM_b20255 -0.6 -2.4 hypothetical protein compare
SMc01556 -0.6 -1.2 hypothetical protein compare
SMc04401 -0.6 -1.7 transcriptional regulator compare
SMc03100 -0.6 -0.6 hypothetical protein compare
SMa0861 -0.6 -2.4 transposase, fragment compare
SMc03124 -0.6 -1.4 periplasmic binding ABC transporter protein compare
SMc00650 -0.6 -1.0 hypothetical protein compare
SMc01153 -0.6 -0.4 enoyl-CoA hydratase compare
SMa1838 -0.6 -1.7 dehydrogenase compare
SMc01183 -0.6 -0.6 LexA repressor compare
SMc01361 -0.6 -1.3 dihydroorotase compare
SMc01417 -0.6 -2.3 hypothetical protein compare
SMc02941 -0.6 -1.9 hypothetical protein compare
SMa0736 -0.6 -1.2 hypothetical protein compare
SM_b20691 -0.6 -1.4 hypothetical protein compare
SMc02260 -0.6 -1.4 ABC transporter ATP-binding protein compare
SMc02861 -0.6 -1.3 phosphate transporter compare
SM_b21029 -0.6 -2.2 hypothetical protein compare
SMc02485 -0.6 -1.2 signal peptide protein compare
SMa2131 -0.6 -3.3 hypothetical protein compare
SMc03839 -0.6 -1.0 hypothetical protein compare
SMa1643 -0.6 -1.6 hypothetical protein compare
SMc00281 -0.6 -2.4 signal peptide protein compare
SM_b20146 -0.6 -2.1 pyridoxal phosphate biosynthetic protein compare
SMc01877 -0.6 -2.3 DNA repair protein compare
SMa0955 -0.6 -0.9 GntR family transcriptional regulator compare
SMc00108 -0.6 -1.1 acetyltransferase compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments