Experiment set18IT077 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc02767 -6.6 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00236 -6.2 -4.3 Indole-3-glycerol phosphate synthase compare
SMc02766 -5.7 -12.7 tryptophan synthase subunit beta compare
SMa1635 -5.1 -2.1 hypothetical protein compare
SMc00235 -4.7 -7.2 anthranilate phosphoribosyltransferase compare
SMc02725 -4.4 -13.0 anthranilate synthase compare
SMc02765 -4.2 -10.0 tryptophan synthase subunit alpha compare
SMc00017 -3.8 -2.0 homoserine kinase compare
SM_b20810 -3.8 -23.5 membrane-located cell surface saccharide acetylase compare
SMc02569 -3.7 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
SMc00918 -3.7 -11.8 ATP phosphoribosyltransferase regulatory subunit compare
SMc00917 -3.5 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02572 -3.3 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
SMc01004 -3.2 -11.5 phosphoribosyl-AMP cyclohydrolase compare
SMc02897 -2.9 -3.4 cytochrome C transmembrane protein compare
SMc02570 -2.9 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02307 -2.6 -8.8 histidinol dehydrogenase compare
SMc01880 -2.6 -3.0 pantoate--beta-alanine ligase compare
SMc00963 -2.3 -2.2 hypothetical protein compare
SMc02574 -2.2 -6.9 imidazoleglycerol-phosphate dehydratase compare
SMc00427 -2.2 -2.2 peptide chain release factor RF-3 protein compare
SMc02055 -2.2 -2.0 phytoene synthase compare
SMc01206 -2.2 -1.3 queuine tRNA-ribosyltransferase compare
SMc01222 -2.1 -9.2 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMa0674 -2.0 -2.0 hypothetical protein compare
SMc02858 -2.0 -0.8 chaperone protein DnaJ compare
SMc02145 -1.9 -1.1 signal peptide protein compare
SMc01881 -1.9 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc00640 -1.8 -7.5 phosphoserine aminotransferase compare
SM_b21480 -1.7 -1.8 hypothetical protein compare
SM_b21175 -1.7 -4.4 phosphate uptake ABC transporter permease compare
SMc01361 -1.7 -3.3 dihydroorotase compare
SM_b21177 -1.7 -4.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc03127 -1.6 -1.5 ABC transporter permease compare
SM_b20282 -1.6 -2.1 spermidine/putrescine ABC transporter permease compare
SMc02137 -1.6 -3.9 ornithine carbamoyltransferase compare
SMc02755 -1.5 -4.9 S-adenosyl-L-homocysteine hydrolase compare
SMc00088 -1.4 -1.3 hypothetical protein compare
SMc00295 -1.4 -1.1 hypothetical protein compare
SMc00353 -1.4 -2.5 transmembrane protein compare
SMc04346 -1.3 -4.3 ketol-acid reductoisomerase compare
SMc00067 -1.3 -7.0 outer-membranne lipoprotein compare
SMc03826 -1.3 -1.2 argininosuccinate synthase compare
SMc02753 -1.3 -1.0 PTS system transporter subunit IIA compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SMc02245 -1.3 -5.4 dihydroorotate dehydrogenase 2 compare
SMc01800 -1.3 -0.7 cytochrome C oxidase assembly transmembrane protein compare
SMc03066 -1.3 -1.4 hypothetical protein compare
SMc02266 -1.3 -1.9 hypothetical protein compare
SMa0760 -1.2 -2.2 FixT2 anti-kinase compare
SMc03839 -1.2 -1.9 hypothetical protein compare
SMc02833 -1.2 -1.1 penicillin-insensitive murein endopeptidase compare
SMc00293 -1.2 -5.0 homoserine dehydrogenase compare
SMc02385 -1.2 -2.4 hypothetical protein compare
SMc00876 -1.2 -2.8 ATP-binding MRP protein compare
SM_b20774 -1.2 -3.1 hypothetical protein compare
SMc03070 -1.2 -3.3 glucose-6-phosphate 1-dehydrogenase compare
SMc00187 -1.2 -2.2 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc01441 -1.2 -4.8 membrane bound protease compare
SMc01471 -1.1 -2.2 cytochrome C oxidase assembly factor transmembrane protein compare
SMc01505 -1.1 -1.4 hypothetical protein compare
SMc00619 -1.1 -1.2 hypothetical protein compare
SMc02166 -1.1 -5.9 dihydroorotase compare
SMc01363 -1.1 -1.3 hypothetical protein compare
SMc00013 -1.1 -1.4 cytochrome C oxidase subunit III transmembrane protein compare
SM_b21174 -1.1 -3.7 phosphate uptake ABC transporter permease compare
SMc04246 -1.1 -1.7 transmembrane signal peptide protein compare
SMc01360 -1.1 -1.7 aspartate carbamoyltransferase catalytic subunit compare
SMc01726 -1.1 -3.3 acetylglutamate kinase compare
SMc02909 -1.1 -1.2 transglycosylase transmembrane protein compare
SMc00914 -1.1 -1.9 oxidoreductase compare
SMc00691 -1.0 -2.6 site-specific tyrosine recombinase XerD compare
SMc01364 -1.0 -1.3 DNA topoisomerase I compare
SMc03069 -1.0 -1.9 6-phosphogluconolactonase compare
SMc02165 -1.0 -5.0 orotate phosphoribosyltransferase compare
SMc01472 -1.0 -1.0 50S ribosomal protein L11 methyltransferase compare
SMc03979 -1.0 -1.8 glyceraldehyde-3-phosphate dehydrogenase compare
SMc03128 -1.0 -2.6 ABC transporter permease compare
SMc01660 -1.0 -2.7 hypothetical protein compare
SMc01569 -0.9 -0.5 carbamoyl phosphate synthase small subunit compare
SM_b20026 -0.9 -1.4 hypothetical protein compare
SMc00412 -0.9 -3.6 orotidine 5'-phosphate decarboxylase compare
SMa0431 -0.9 -1.5 hypothetical protein compare
SMc03140 -0.9 -3.4 transcriptional regulator compare
SMc00188 -0.9 -4.6 cytochrome B transmembrane protein compare
SMc01801 -0.9 -1.3 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SM_b20814 -0.9 -4.4 hypothetical protein compare
SMc04026 -0.9 -4.9 glutamate synthase compare
SMc01438 -0.9 -2.8 protease precursor signal peptide protein compare
SM_b20880 -0.9 -4.4 ATP-dependent RNA helicase compare
SMc00085 -0.9 -2.4 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc03899 -0.9 -1.0 hypothetical protein compare
SMc01183 -0.9 -0.6 LexA repressor compare
SMa0736 -0.9 -1.7 hypothetical protein compare
SMc00451 -0.8 -3.2 processing protease compare
SMc00579 -0.8 -2.6 dimethyladenosine transferase compare
SM_b20148 -0.8 -3.2 transcriptional regulator compare
SMc02861 -0.8 -1.8 phosphate transporter compare
SMc02906 -0.8 -0.8 hypothetical protein compare
SM_b20809 -0.8 -3.1 arabinose-5-phosphate isomerase compare
SMc01368 -0.8 -2.8 transport transmembrane protein compare
SMc03050 -0.8 -1.5 flagellar biosynthesis regulatory protein FlaF compare
SMa0144 -0.8 -0.7 hypothetical protein compare
SMa0645 -0.8 -1.6 hypothetical protein compare
SMc01440 -0.8 -2.1 hydrolase serine protease transmembrane protein compare
SMc02138 -0.8 -2.7 acetylornithine transaminase compare
SMa0776 -0.8 -1.5 TRm23b IS ATP-binding protein compare
SMc00981 -0.8 -2.7 ferredoxin protein compare
SMc00904 -0.8 -3.8 hypothetical protein compare
SM_b20752 -0.8 -3.5 3-hydroxyisobutyryl-CoA hydrolase compare
SMc02050 -0.8 -1.5 trigger factor compare
SMc02338 -0.8 -1.4 periplasmic binding ABC transporter protein compare
SMc01153 -0.8 -1.0 enoyl-CoA hydratase compare
SMc04045 -0.8 -3.9 dihydroxy-acid dehydratase compare
SMc02582 -0.8 -1.9 hypothetical protein compare
SMc01208 -0.8 -1.1 peptidyl-prolyl cis-trans isomerase B protein compare
SMc03835 -0.7 -2.8 2'-5' RNA ligase compare
SMc00099 -0.7 -1.9 alkylphosphonate uptake protein compare
SMa0190 -0.7 -3.6 transcriptional regulator compare
SMa1158 -0.7 -2.4 hypothetical protein compare
SMc02225 -0.7 -2.4 hypothetical protein compare
SMa1917 -0.7 -2.3 hypothetical protein compare
SMa1597 -0.7 -2.2 Pilus assembly chaperone compare
SMc02886 -0.7 -1.3 signal peptide protein compare
SMc04028 -0.7 -5.6 glutamate synthase compare
SMc03996 -0.7 -2.4 thiamine-phosphate pyrophosphorylase compare
SMc03978 -0.7 -0.6 transketolase compare
SMc00189 -0.7 -1.6 cytochrome C1 protein compare
SMc00711 -0.7 -1.9 cyclohexadienyl dehydrogenase compare
SMc04385 -0.7 -2.2 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SM_b20555 -0.7 -3.0 hypothetical protein compare
SMc02435 -0.7 -0.9 methyltransferase compare
SMc02647 -0.7 -1.4 transcriptional regulator compare
SMc02983 -0.7 -3.0 ornithine, DAP, or arginine decarboxylase compare
SMa0995 -0.7 -2.6 TRm5 transposase compare
SM_b21524 -0.7 -1.4 septum formation inhibitor compare
SMc00194 -0.7 -2.4 hypothetical protein compare
SMc05001 -0.7 -2.8 hypothetical protein compare
SMa0286 -0.7 -1.6 hypothetical protein compare
SMc01606 -0.7 -3.4 permease compare
SMc02787 -0.7 -1.5 hypothetical protein compare
SM_b21182 -0.7 -3.2 hypothetical protein compare
SM_b21176 -0.7 -1.8 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02115 -0.7 -0.4 hypothetical protein compare
SMc01974 -0.7 -1.8 transcriptional regulator compare
SMc00709 -0.7 -2.2 hypothetical protein compare
SMc02510 -0.7 -0.5 ferric uptake regulation protein compare
SMc04432 -0.7 -2.8 hypothetical protein compare
SMc00973 -0.6 -1.9 hypothetical protein compare
SM_b20616 -0.6 -1.1 thiamine biosynthesis oxidoreductase compare
SM_b20357 -0.6 -2.5 histidine kinase compare
SMc02978 -0.6 -1.5 hypothetical protein compare
SMc00513 -0.6 -2.4 amino acid-binding periplasmic protein compare
SMc04245 -0.6 -3.6 high-affinity zinc uptake system ABC transporter protein compare
SM_b20580 -0.6 -1.4 LysR family transcriptional regulator compare
SMc02052 -0.6 -0.7 hypothetical protein compare
SMc00982 -0.6 -2.1 dioxygenase compare
SMa0753 -0.6 -0.5 hypothetical protein compare
SMc00580 -0.6 -1.1 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc00361 -0.6 -1.1 hypothetical protein compare
SMa1017 -0.6 -0.9 hypothetical protein compare
SMc00349 -0.6 -2.6 GTP-binding protein LepA compare
SMc01431 -0.6 -4.4 acetolactate synthase 3 catalytic subunit compare
SMc02035 -0.6 -2.7 oxidoreductase compare
SMc02862 -0.6 -3.2 Pit accessory protein compare
SMc01124 -0.6 -3.4 PII uridylyl-transferase compare
SMc00029 -0.6 -1.9 hypothetical protein compare
SMc03878 -0.6 -1.6 acetoacetyl-CoA reductase compare
SMc01877 -0.6 -2.7 DNA repair protein compare
SM_b20143 -0.6 -0.9 oligopeptide ABC transporter permease compare
SMa0267 -0.6 -2.5 GntR family transcriptional regulator compare
SMc00641 -0.6 -2.4 D-3-phosphoglycerate dehydrogenase compare
SMa0809 -0.6 -2.8 hypothetical protein compare
SM_b20474 -0.6 -1.7 hypothetical protein compare
SM_b21008 -0.6 -2.3 ArsR family transcriptional regulator compare
SM_b22001 -0.6 -0.6 hypothetical protein compare
SMc04401 -0.6 -2.3 transcriptional regulator compare
SM_b20822 -0.6 -2.6 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SMc00554 -0.6 -2.8 amidophosphoribosyltransferase compare
SM_b21479 -0.6 -0.7 hypothetical protein compare
SM_b20540 -0.6 -0.8 hypothetical protein compare
SMc03242 -0.6 -1.0 GTP-binding protein compare
SMc04327 -0.6 -0.7 hypothetical protein compare
SM_b21035 -0.6 -2.3 hypothetical protein compare
SMc03227 -0.6 -1.3 hypothetical protein compare
SMa1170 -0.6 -1.6 hypothetical protein compare
SMa0433 -0.6 -1.5 hypothetical protein compare
SMc01605 -0.6 -2.4 periplasmic binding ABC transporter protein compare
SMc02232 -0.6 -1.1 hypothetical protein compare
SMc00091 -0.6 -3.5 sulfate adenylyltransferase compare
SMc01036 -0.6 -1.9 hypothetical protein compare
SMc00286 -0.6 -0.9 hemolysin-type calcium-binding protein compare
SMa0520 -0.6 -3.1 RpiR family transcriptional regulator compare
SMc02739 -0.6 -1.9 glycine betaine transport ATP-binding ABC transporter protein compare
SMc01186 -0.6 -1.8 hypothetical protein compare
SMc04221 -0.6 -1.6 hypothetical protein compare
SMc00090 -0.6 -2.6 sulfate adenylyltransferase compare
SMc00495 -0.6 -1.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02354 -0.6 -2.2 hypothetical protein compare
SMc02280 -0.5 -0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments