Experiment set18IT053 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc00235 -6.5 -7.7 anthranilate phosphoribosyltransferase compare
SMc00236 -6.1 -6.6 Indole-3-glycerol phosphate synthase compare
SMc02767 -5.9 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02766 -5.6 -19.3 tryptophan synthase subunit beta compare
SMc02765 -4.5 -11.6 tryptophan synthase subunit alpha compare
SMc02725 -4.3 -14.4 anthranilate synthase compare
SMa1635 -3.9 -2.6 hypothetical protein compare
SMc02572 -3.2 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc02569 -2.9 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
SMc02570 -2.8 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00815 -2.6 -1.6 inosine 5'-monophosphate dehydrogenase compare
SMc00918 -2.6 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
SM_b20810 -2.3 -17.3 membrane-located cell surface saccharide acetylase compare
SMc03229 -2.3 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00917 -2.2 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00017 -2.2 -2.0 homoserine kinase compare
SMc01004 -2.2 -8.8 phosphoribosyl-AMP cyclohydrolase compare
SMc02234 -2.1 -2.5 hypothetical protein compare
SMc02897 -2.0 -2.3 cytochrome C transmembrane protein compare
SMc00010 -1.9 -1.8 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc03967 -1.9 -1.3 Holliday junction resolvase compare
SMc01222 -1.8 -7.0 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc03127 -1.8 -1.7 ABC transporter permease compare
SMc03763 -1.8 -1.2 cytosine-specific methyltransferase compare
SMc01153 -1.7 -1.5 enoyl-CoA hydratase compare
SMc00295 -1.7 -1.3 hypothetical protein compare
SMc00580 -1.7 -2.6 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc01880 -1.6 -1.5 pantoate--beta-alanine ligase compare
SMc02574 -1.6 -5.0 imidazoleglycerol-phosphate dehydratase compare
SMc02232 -1.6 -1.8 hypothetical protein compare
SMc02307 -1.5 -6.9 histidinol dehydrogenase compare
SMc02719 -1.5 -1.2 transposase compare
SM_b20105 -1.5 -1.9 transcriptional regulator compare
SMc00013 -1.4 -1.5 cytochrome C oxidase subunit III transmembrane protein compare
SMc04346 -1.4 -4.9 ketol-acid reductoisomerase compare
SMc00726 -1.4 -0.7 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc03066 -1.3 -2.3 hypothetical protein compare
SMc03839 -1.3 -1.5 hypothetical protein compare
SMc02058 -1.3 -3.0 YAJC protein compare
SMc02909 -1.3 -1.4 transglycosylase transmembrane protein compare
SMc03850 -1.3 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc00640 -1.2 -5.7 phosphoserine aminotransferase compare
SMc00166 -1.2 -1.4 oxidoreductase NAD protein compare
SMc03124 -1.2 -2.3 periplasmic binding ABC transporter protein compare
SMc03978 -1.2 -0.8 transketolase compare
SM_b21096 -1.1 -1.2 amino acid transporter ABC transporter ATP-binding protein compare
SMc01242 -1.1 -1.3 signal peptide protein compare
SMc03834 -1.1 -1.4 pterin-4-alpha-carbinolamine dehydratase compare
SMc02165 -1.1 -4.4 orotate phosphoribosyltransferase compare
SMc02050 -1.1 -2.6 trigger factor compare
SMa1002 -1.1 -2.0 hypothetical protein compare
SMc01364 -1.1 -1.2 DNA topoisomerase I compare
SMc00012 -1.1 -0.9 cytochrome C oxidase assembly protein compare
SM_b20750 -1.1 -1.5 dehydrogenase compare
SMc02245 -1.1 -3.6 dihydroorotate dehydrogenase 2 compare
SMc01361 -1.1 -2.3 dihydroorotase compare
SMc02166 -1.1 -5.4 dihydroorotase compare
SMc03069 -1.1 -1.0 6-phosphogluconolactonase compare
SMc01726 -1.1 -3.1 acetylglutamate kinase compare
SM_b20143 -1.1 -1.1 oligopeptide ABC transporter permease compare
SMc01223 -1.1 -2.4 transcriptional regulator compare
SM_b20387 -1.1 -1.0 transcriptional regulator compare
SMc00188 -1.0 -4.6 cytochrome B transmembrane protein compare
SMc00981 -1.0 -4.4 ferredoxin protein compare
SMc04385 -1.0 -3.4 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SM_b21115 -1.0 -1.9 response regulator protein compare
SMc00293 -1.0 -4.9 homoserine dehydrogenase compare
SMc02683 -1.0 -1.3 hypothetical protein compare
SMc00711 -1.0 -2.9 cyclohexadienyl dehydrogenase compare
SMc03996 -1.0 -2.3 thiamine-phosphate pyrophosphorylase compare
SMc00425 -1.0 -1.4 transcriptional regulator compare
SMc02077 -1.0 -2.0 exodeoxyribonuclease III protein compare
SMc00361 -1.0 -2.5 hypothetical protein compare
SMc02758 -1.0 -3.6 nucleotidyl transferase compare
SMc00404 -1.0 -0.8 hypothetical protein compare
SMc02753 -1.0 -0.6 PTS system transporter subunit IIA compare
SM_b20880 -1.0 -4.8 ATP-dependent RNA helicase compare
SMc02137 -1.0 -3.1 ornithine carbamoyltransferase compare
SMc04088 -1.0 -5.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00876 -0.9 -2.6 ATP-binding MRP protein compare
SMa0940 -0.9 -2.1 Response regulator compare
SMc00419 -0.9 -1.7 glutathione synthetase compare
SMc00641 -0.9 -3.6 D-3-phosphoglycerate dehydrogenase compare
SMc01440 -0.9 -2.2 hydrolase serine protease transmembrane protein compare
SMa0955 -0.9 -1.0 GntR family transcriptional regulator compare
SMc00067 -0.9 -3.3 outer-membranne lipoprotein compare
SMc00963 -0.9 -1.1 hypothetical protein compare
SMc02247 -0.9 -0.9 signal peptide protein compare
SM_b21480 -0.9 -0.8 hypothetical protein compare
SMc02755 -0.9 -3.1 S-adenosyl-L-homocysteine hydrolase compare
SMc01494 -0.9 -4.5 phosphoserine phosphatase compare
SMc01644 -0.9 -1.5 ABC transporter permease compare
SMc02505 -0.8 -1.0 hypothetical protein compare
SMc01858 -0.8 -0.8 S-adenosyl-methyltransferase MraW compare
SMc01881 -0.8 -1.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SM_b20580 -0.8 -2.1 LysR family transcriptional regulator compare
SMc02102 -0.8 -1.7 hypothetical protein compare
SMc00412 -0.8 -1.9 orotidine 5'-phosphate decarboxylase compare
SMc02333 -0.8 -1.7 hypothetical protein compare
SMc01183 -0.8 -0.7 LexA repressor compare
SMc01929 -0.8 -1.3 hypothetical protein compare
SMc02866 -0.8 -2.0 transcriptional regulator compare
SMc00090 -0.8 -4.3 sulfate adenylyltransferase compare
SMc02435 -0.8 -0.7 methyltransferase compare
SMc01724 -0.8 -1.9 hypothetical protein compare
SMc03863 -0.8 -1.8 50S ribosomal protein L19 compare
SMc01099 -0.8 -1.5 tRNA pseudouridine synthase A compare
SMc03100 -0.8 -0.6 hypothetical protein compare
SMc02695 -0.8 -2.3 GTP-dependent nucleic acid-binding protein EngD compare
SMc00143 -0.8 -1.4 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc01007 -0.8 -1.3 hypothetical protein compare
SMa1365 -0.8 -0.9 ATP-binding protein compare
SMc02850 -0.8 -0.9 DNA polymerase I compare
SMa0520 -0.8 -3.3 RpiR family transcriptional regulator compare
SMc01505 -0.8 -1.0 hypothetical protein compare
SM_b20955 -0.7 -1.9 endo-beta-1,3-1,4-glycanase compare
SMc01845 -0.7 -0.9 transglycosylase transmembrane protein compare
SMa0846 -0.7 -0.9 transposase, fragment compare
SMc03836 -0.7 -0.9 acyl-CoA thioesterase i protein compare
SMa0964 -0.7 -2.0 hypothetical protein compare
SMc03008 -0.7 -0.8 chemotaxis protein compare
SM_b20814 -0.7 -3.4 hypothetical protein compare
SMc02361 -0.7 -1.7 cytochrome C-type biogenesis transmembrane protein compare
SMc04327 -0.7 -0.8 hypothetical protein compare
SM_b21591 -0.7 -1.1 GntR family transcriptional regulator compare
SMc00566 -0.7 -1.7 hypothetical protein compare
SMc01595 -0.7 -1.7 sensor histidine kinase transmembrane protein compare
SMc00691 -0.7 -1.7 site-specific tyrosine recombinase XerD compare
SMc01501 -0.7 -1.3 mannitol 2-dehydrogenase compare
SM_b20994 -0.7 -1.9 hypothetical protein compare
SMc01933 -0.7 -1.0 hypothetical protein compare
SM_b20258 -0.7 -1.4 transcriptional regulator compare
SMc03111 -0.7 -3.3 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc00812 -0.7 -1.5 hypothetical protein compare
SMc01360 -0.7 -0.8 aspartate carbamoyltransferase catalytic subunit compare
SMc04008 -0.7 -1.4 hypothetical protein compare
SMc02862 -0.7 -3.1 Pit accessory protein compare
SMa0861 -0.7 -2.0 transposase, fragment compare
SMc03184 -0.7 -0.8 PH adaptation potassium efflux system G transmembrane protein compare
SM_b20773 -0.7 -1.5 GntR family transcriptional regulator compare
SMc01207 -0.7 -1.0 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SM_b20114 -0.7 -1.7 hypothetical protein compare
SMa0267 -0.7 -2.9 GntR family transcriptional regulator compare
SMa1223 -0.7 -2.0 hypothetical protein compare
SMc04134 -0.7 -2.5 transcriptional regulator compare
SMc01472 -0.7 -0.7 50S ribosomal protein L11 methyltransferase compare
SMa0083 -0.7 -2.5 ABC transporter ATP-binding protein compare
SMc03070 -0.7 -2.3 glucose-6-phosphate 1-dehydrogenase compare
SMc00982 -0.7 -2.3 dioxygenase compare
SMc04383 -0.7 -2.3 putative hydrolase, required for lysine catabolism (from data) compare
SMc03128 -0.7 -1.5 ABC transporter permease compare
SMc04085 -0.7 -2.1 hypothetical protein compare
SMc01441 -0.7 -2.2 membrane bound protease compare
SMc01801 -0.7 -1.6 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMa0085 -0.7 -1.6 dehydrogenase compare
SMc02647 -0.7 -1.2 transcriptional regulator compare
SMc04453 -0.7 -0.8 hypothetical protein compare
SMc01431 -0.7 -4.6 acetolactate synthase 3 catalytic subunit compare
SMa0431 -0.7 -1.0 hypothetical protein compare
SMa0740 -0.6 -1.4 hypothetical protein compare
SMc01608 -0.6 -1.8 ABC transporter ATP-binding protein compare
SMc01605 -0.6 -2.2 periplasmic binding ABC transporter protein compare
SMc02149 -0.6 -1.1 hypothetical protein compare
SMa1765 -0.6 -1.0 hypothetical protein compare
SMc02071 -0.6 -1.2 hydrolase glycosidase compare
SMc00569 -0.6 -1.4 hypothetical protein compare
SMc04239 -0.6 -2.3 hypothetical protein compare
SMc01119 -0.6 -1.0 hypothetical protein compare
SMc04090 -0.6 -1.8 sun protein compare
SMc01488 -0.6 -3.4 hypothetical protein compare
SMc00512 -0.6 -3.3 hypothetical protein compare
SM_b21167 -0.6 -1.7 reverse transcriptasematurase compare
SM_b20257 -0.6 -1.9 adenylate cyclase compare
SMc03204 -0.6 -2.6 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
SMc01368 -0.6 -1.9 transport transmembrane protein compare
SMc01347 -0.6 -1.5 hypothetical protein compare
SM_b21475 -0.6 -1.2 hypothetical protein compare
SMc03010 -0.6 -1.7 chemotaxis-specific methylesterase compare
SMc01579 -0.6 -0.6 hypothetical protein compare
SMc00416 -0.6 -3.0 hypothetical protein compare
SMc00132 -0.6 -1.2 hypothetical protein compare
SMc02373 -0.6 -0.8 hypothetical protein compare
SMc02353 -0.6 -2.5 hypothetical protein compare
SMc02323 -0.6 -1.9 transcriptional regulator compare
SM_b20698 -0.6 -2.7 transporter compare
SMc04313 -0.6 -2.7 hypothetical protein compare
SM_b20746 -0.6 -0.6 hypothetical protein compare
SM_b20014 -0.6 -2.6 transcriptional regulator compare
SMc02434 -0.6 -1.3 hypothetical protein compare
SMa5010 -0.6 -0.8 hypothetical protein compare
SMc04432 -0.6 -3.0 hypothetical protein compare
SMc00427 -0.6 -0.7 peptide chain release factor RF-3 protein compare
SMc01819 -0.6 -1.6 transcriptional regulator compare
SMc02172 -0.6 -3.0 transcriptional regulator compare
SMc02640 -0.6 -1.7 UDP-glucuronic acid epimerase compare
SM_b20274 -0.6 -2.4 hypothetical protein compare
SMc00331 -0.6 -1.9 hypothetical protein compare
SM_b21176 -0.6 -1.5 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00914 -0.6 -1.3 oxidoreductase compare
SMc01434 -0.6 -2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments