Experiment set18IT052 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc00236 -7.9 -5.5 Indole-3-glycerol phosphate synthase compare
SMc00235 -6.1 -8.4 anthranilate phosphoribosyltransferase compare
SMc02767 -5.7 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02766 -5.2 -17.5 tryptophan synthase subunit beta compare
SMc02765 -4.9 -13.3 tryptophan synthase subunit alpha compare
SMa1635 -4.6 -2.6 hypothetical protein compare
SMc02725 -4.5 -13.8 anthranilate synthase compare
SMc02569 -4.3 -4.6 imidazole glycerol phosphate synthase subunit HisF compare
SMc00017 -3.6 -1.9 homoserine kinase compare
SMc02572 -3.4 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
SM_b20810 -3.0 -21.0 membrane-located cell surface saccharide acetylase compare
SMc00010 -2.9 -2.0 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc03839 -2.8 -2.8 hypothetical protein compare
SMc01242 -2.6 -2.7 signal peptide protein compare
SMc00427 -2.6 -2.4 peptide chain release factor RF-3 protein compare
SMc00918 -2.3 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
SMc01361 -2.3 -3.6 dihydroorotase compare
SMc01004 -2.1 -7.9 phosphoribosyl-AMP cyclohydrolase compare
SMc03069 -2.1 -2.1 6-phosphogluconolactonase compare
SMc01360 -2.1 -2.4 aspartate carbamoyltransferase catalytic subunit compare
SMc00012 -2.0 -1.6 cytochrome C oxidase assembly protein compare
SMc00963 -2.0 -1.9 hypothetical protein compare
SMc03127 -2.0 -1.8 ABC transporter permease compare
SMc03763 -1.9 -1.3 cytosine-specific methyltransferase compare
SMc02246 -1.9 -0.7 hypothetical protein compare
SMc01880 -1.8 -1.7 pantoate--beta-alanine ligase compare
SMc00917 -1.8 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02165 -1.8 -6.5 orotate phosphoribosyltransferase compare
SMc00928 -1.8 -1.4 signal peptide protein compare
SMc02570 -1.8 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc01222 -1.8 -8.2 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02897 -1.6 -2.7 cytochrome C transmembrane protein compare
SMc01207 -1.6 -1.8 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc00412 -1.5 -4.2 orotidine 5'-phosphate decarboxylase compare
SMc03124 -1.5 -2.6 periplasmic binding ABC transporter protein compare
SMc02425 -1.5 -2.8 transcriptional regulator compare
SMc04330 -1.4 -1.6 trimethylamine methyltransferase compare
SMc00812 -1.4 -3.1 hypothetical protein compare
SMc03967 -1.4 -1.1 Holliday junction resolvase compare
SMc02166 -1.4 -7.2 dihydroorotase compare
SMc01441 -1.4 -4.7 membrane bound protease compare
SMc02307 -1.4 -5.8 histidinol dehydrogenase compare
SMc03100 -1.4 -1.1 hypothetical protein compare
SMc01471 -1.3 -2.1 cytochrome C oxidase assembly factor transmembrane protein compare
SMc04453 -1.3 -1.5 hypothetical protein compare
SMc00013 -1.3 -1.8 cytochrome C oxidase subunit III transmembrane protein compare
SMc02909 -1.3 -1.7 transglycosylase transmembrane protein compare
SMc02245 -1.3 -4.0 dihydroorotate dehydrogenase 2 compare
SMc01223 -1.3 -2.6 transcriptional regulator compare
SMc01881 -1.2 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02055 -1.2 -1.6 phytoene synthase compare
SM_b20294 -1.2 -1.4 transcriptional regulator NanR compare
SMc02102 -1.2 -2.4 hypothetical protein compare
SMc00293 -1.2 -6.8 homoserine dehydrogenase compare
SMa5010 -1.2 -1.5 hypothetical protein compare
SMc00711 -1.2 -2.6 cyclohexadienyl dehydrogenase compare
SMc03978 -1.2 -1.1 transketolase compare
SMc02137 -1.1 -2.3 ornithine carbamoyltransferase compare
SMc04246 -1.1 -1.6 transmembrane signal peptide protein compare
SMc04346 -1.1 -4.3 ketol-acid reductoisomerase compare
SMc01845 -1.1 -0.9 transglycosylase transmembrane protein compare
SMc00619 -1.1 -1.2 hypothetical protein compare
SMc00492 -1.1 -0.7 hypothetical protein compare
SM_b21580 -1.1 -1.4 hypothetical protein compare
SMc01147 -1.1 -1.5 coproporphyrinogen III oxidase compare
SMc02799 -1.1 -2.7 16S rRNA methyltransferase GidB compare
SMc00404 -1.1 -1.0 hypothetical protein compare
SMc03293 -1.0 -0.9 hypothetical protein compare
SM_b21177 -1.0 -5.0 phosphate uptake ABC transporter ATP-binding protein compare
SMc02046 -1.0 -1.5 hypothetical protein compare
SM_b20105 -1.0 -1.6 transcriptional regulator compare
SMa0674 -1.0 -1.4 hypothetical protein compare
SMa2215 -1.0 -3.1 GntR family transcriptional regulator compare
SM_b20880 -1.0 -5.5 ATP-dependent RNA helicase compare
SMc01800 -1.0 -0.5 cytochrome C oxidase assembly transmembrane protein compare
SMc00067 -1.0 -5.1 outer-membranne lipoprotein compare
SMc00580 -1.0 -2.0 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc03184 -1.0 -1.3 PH adaptation potassium efflux system G transmembrane protein compare
SMc00302 -1.0 -1.5 hypothetical protein compare
SM_b20809 -1.0 -3.5 arabinose-5-phosphate isomerase compare
SM_b20387 -1.0 -1.2 transcriptional regulator compare
SMc02373 -1.0 -1.0 hypothetical protein compare
SMc00641 -1.0 -3.8 D-3-phosphoglycerate dehydrogenase compare
SMc01494 -1.0 -6.4 phosphoserine phosphatase compare
SM_b21689 -0.9 -2.6 hypothetical protein compare
SMc02591 -0.9 -2.9 hypothetical protein compare
SMc01208 -0.9 -0.9 peptidyl-prolyl cis-trans isomerase B protein compare
SMc02755 -0.9 -3.3 S-adenosyl-L-homocysteine hydrolase compare
SMc00650 -0.9 -1.1 hypothetical protein compare
SMc03070 -0.9 -3.1 glucose-6-phosphate 1-dehydrogenase compare
SMa1639 -0.9 -1.5 hypothetical protein compare
SMc01606 -0.9 -3.9 permease compare
SMc00188 -0.9 -4.1 cytochrome B transmembrane protein compare
SMa0740 -0.9 -1.6 hypothetical protein compare
SMc00295 -0.9 -0.9 hypothetical protein compare
SM_b21176 -0.9 -2.7 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMa1779 -0.9 -2.0 hypothetical protein compare
SMc01472 -0.9 -1.0 50S ribosomal protein L11 methyltransferase compare
SMa0063 -0.9 -2.7 GntR family transcriptional regulator compare
SMc03941 -0.9 -1.3 hypothetical protein compare
SM_b20280 -0.9 -2.8 hypothetical protein compare
SMc01842 -0.9 -1.8 methyltransferase transcription regulator protein compare
SMc00166 -0.8 -1.5 oxidoreductase NAD protein compare
SMa0760 -0.8 -1.4 FixT2 anti-kinase compare
SMc01644 -0.8 -2.1 ABC transporter permease compare
SMc02115 -0.8 -0.6 hypothetical protein compare
SMc02058 -0.8 -2.2 YAJC protein compare
SMc02434 -0.8 -1.8 hypothetical protein compare
SMc02978 -0.8 -2.0 hypothetical protein compare
SMc03835 -0.8 -1.9 2'-5' RNA ligase compare
SMc01577 -0.8 -1.6 hypothetical protein compare
SMc02435 -0.8 -1.1 methyltransferase compare
SMa2251 -0.8 -3.1 hypothetical protein compare
SMa0206 -0.8 -3.6 Response regulator compare
SMc02510 -0.8 -0.5 ferric uptake regulation protein compare
SMc04045 -0.8 -4.5 dihydroxy-acid dehydratase compare
SMc01801 -0.8 -0.9 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SM_b20814 -0.8 -4.2 hypothetical protein compare
SMc01440 -0.8 -3.2 hydrolase serine protease transmembrane protein compare
SMc02052 -0.8 -0.7 hypothetical protein compare
SM_b21400 -0.7 -1.5 hypothetical protein compare
SMc01438 -0.7 -2.4 protease precursor signal peptide protein compare
SMc04432 -0.7 -2.6 hypothetical protein compare
SMc02385 -0.7 -0.9 hypothetical protein compare
SMc00821 -0.7 -1.2 hypothetical protein compare
SMc01770 -0.7 -1.1 serine hydroxymethyltransferase compare
SMc01933 -0.7 -0.9 hypothetical protein compare
SMc04088 -0.7 -4.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03826 -0.7 -0.8 argininosuccinate synthase compare
SMc00876 -0.7 -2.1 ATP-binding MRP protein compare
SM_b20760 -0.7 -2.2 carbon-phosphorus lyase compare
SMa1138 -0.7 -2.5 hypothetical protein compare
SMc02683 -0.7 -1.0 hypothetical protein compare
SM_b21479 -0.7 -1.3 hypothetical protein compare
SM_b21175 -0.7 -2.0 phosphate uptake ABC transporter permease compare
SMc00143 -0.7 -1.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc01757 -0.7 -1.4 hypothetical protein compare
SMc01607 -0.7 -3.6 permease compare
SMc00914 -0.7 -1.5 oxidoreductase compare
SMc02134 -0.7 -2.7 hypothetical protein compare
SMc00640 -0.7 -3.2 phosphoserine aminotransferase compare
SMc02138 -0.7 -3.0 acetylornithine transaminase compare
SMc01558 -0.7 -2.5 hypothetical protein compare
SMa0857 -0.7 -2.6 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase compare
SMc02107 -0.7 -0.8 hypothetical protein compare
SMc03996 -0.7 -2.0 thiamine-phosphate pyrophosphorylase compare
SMc02333 -0.7 -2.3 hypothetical protein compare
SMc01726 -0.6 -3.3 acetylglutamate kinase compare
SMc01724 -0.6 -1.9 hypothetical protein compare
SM_b20752 -0.6 -3.0 3-hydroxyisobutyryl-CoA hydrolase compare
SM_b20323 -0.6 -0.8 transcriptional regulator compare
SMa1918 -0.6 -1.7 hypothetical protein compare
SM_b20448 -0.6 -2.4 hypothetical protein compare
SMc01595 -0.6 -1.9 sensor histidine kinase transmembrane protein compare
SMc01119 -0.6 -1.1 hypothetical protein compare
SMc00815 -0.6 -0.5 inosine 5'-monophosphate dehydrogenase compare
SMa2131 -0.6 -3.0 hypothetical protein compare
SMc02048 -0.6 -1.6 glycine cleavage system protein H compare
SMa1702 -0.6 -3.3 hypothetical protein compare
SMc02164 -0.6 -1.0 fructokinase compare
SMc02247 -0.6 -0.7 signal peptide protein compare
SMa1413 -0.6 -1.3 hypothetical protein compare
SM_b21182 -0.6 -3.4 hypothetical protein compare
SMa1053 -0.6 -1.0 hypothetical protein compare
SMc00648 -0.6 -1.9 hypothetical protein compare
SMc03008 -0.6 -0.7 chemotaxis protein compare
SMc01153 -0.6 -0.8 enoyl-CoA hydratase compare
SMc00712 -0.6 -1.1 hypothetical protein compare
SMc03850 -0.6 -0.4 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SM_b20955 -0.6 -1.9 endo-beta-1,3-1,4-glycanase compare
SMa0448 -0.6 -1.5 hypothetical protein compare
SMc04239 -0.6 -2.6 hypothetical protein compare
SMa0267 -0.6 -2.3 GntR family transcriptional regulator compare
SMc04385 -0.6 -1.8 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc02159 -0.6 -2.3 hypothetical protein compare
SMa0874 -0.6 -2.0 NodN dehydratase compare
SMc00709 -0.6 -1.6 hypothetical protein compare
SMc02787 -0.6 -1.3 hypothetical protein compare
SMc04428 -0.6 -2.3 hypothetical protein compare
SMc03258 -0.6 -2.5 transcriptional regulator compare
SMc03140 -0.6 -2.0 transcriptional regulator compare
SMa0520 -0.6 -2.7 RpiR family transcriptional regulator compare
SM_b20320 -0.6 -0.9 TRAP-type large permease component compare
SMc02451 -0.6 -0.7 hypothetical protein compare
SMc00088 -0.6 -0.7 hypothetical protein compare
SM_b21174 -0.6 -2.4 phosphate uptake ABC transporter permease compare
SMc02858 -0.6 -0.3 chaperone protein DnaJ compare
SMa5015 -0.6 -1.5 hypothetical protein compare
SM_b20146 -0.6 -2.0 pyridoxal phosphate biosynthetic protein compare
SMc02786 -0.6 -3.5 translocase transmembrane protein compare
SMc04174 -0.6 -1.0 signal peptide protein compare
SMc02050 -0.6 -1.3 trigger factor compare
SMc02543 -0.5 -2.0 hypothetical protein compare
SMc01260 -0.5 -1.6 transcriptional regulator compare
SMc02695 -0.5 -2.1 GTP-dependent nucleic acid-binding protein EngD compare
SMc04327 -0.5 -0.7 hypothetical protein compare
SMa0645 -0.5 -1.3 hypothetical protein compare
SMc02544 -0.5 -0.6 hypothetical protein compare
SMc00566 -0.5 -1.4 hypothetical protein compare
SMa2169 -0.5 -3.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments