Experiment set18IT051 for Bacteroides thetaiotaomicron VPI-5482
PEG (Day 3) - Cage2;Mouse1
Group: mouse_peg_treatmentMedia: + Polyethylene glycol (15 vol%)
Culturing: Btheta_ML6a
By: Deanna Pepin on 2/1/21
Specific Phenotypes
For 13 genes in this experiment
For mouse_peg_treatment Polyethylene glycol in Bacteroides thetaiotaomicron VPI-5482
For mouse_peg_treatment Polyethylene glycol across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Citrate cycle (TCA cycle)
- Pentose phosphate pathway
- Glyoxylate and dicarboxylate metabolism
- Reductive carboxylate cycle (CO2 fixation)
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| ribose phosphorylation | 2 | 1 | 1 |
| glyoxylate cycle | 6 | 4 | 2 |
| 2-deoxy-D-ribose degradation I | 3 | 2 | 1 |
| partial TCA cycle (obligate autotrophs) | 8 | 5 | 2 |
| nitrogen remobilization from senescing leaves | 8 | 5 | 2 |
| TCA cycle V (2-oxoglutarate synthase) | 9 | 8 | 2 |
| TCA cycle II (plants and fungi) | 9 | 6 | 2 |
| TCA cycle VII (acetate-producers) | 9 | 6 | 2 |
| TCA cycle VI (Helicobacter) | 9 | 6 | 2 |
| TCA cycle IV (2-oxoglutarate decarboxylase) | 9 | 6 | 2 |
| TCA cycle III (animals) | 10 | 7 | 2 |
| TCA cycle I (prokaryotic) | 10 | 7 | 2 |
| reductive TCA cycle I | 11 | 9 | 2 |
| reductive TCA cycle II | 12 | 8 | 2 |
| superpathway of glyoxylate bypass and TCA | 12 | 7 | 2 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 6 | 2 |
| mixed acid fermentation | 16 | 12 | 2 |
| methylaspartate cycle | 19 | 11 | 2 |
| superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | 22 | 17 | 2 |
| ethene biosynthesis V (engineered) | 25 | 15 | 2 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 18 | 2 |